NO21G01970.1, NO21G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01970.1
Unique NameNO21G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr21:577755..578844 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:577755..578844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01970.1 vs.
Match: EWM22697.1 (hypothetical protein Naga_100340g7 [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 4.400e-39
Identity = 76/174 (43.68%), Postives = 119/174 (68.39%), Query Frame = 0 
Query:   64 ADKEDCNKIAEMFTLRLDKMWEYAHGHVSDTLRNPKVVLGLGWHDESNVPIGEVDVQFRAVSLVKVLVWPRWTVPYVDVKVQSAPAAKAFKSAFNALSTTAVHSTVIRRVQELSDPVTVTEDAGEIGGGRFDKVEKGVRGLLYYTLPLLFMGVPFPLMMLVNSKRKGLWGQEMK 238
            +D E C+ + + FT R DK++++  GHV DTLR P++VL +GWH+E++ P GE+DVQF+A+S+ ++   P WT PY+DV +Q+ PA++ F+SAF +L+TTA  ST +R +Q L + +  T+ AG++  G FD++ +G+  L+ Y  PLLF G P PL++ V  K +G    E K
Sbjct:   64 SDAEVCDVVEDTFTFRFDKLYDFVRGHVVDTLRKPRLVLAVGWHEETSTPTGELDVQFQAISVARISFRPHWTAPYLDVSMQT-PASRVFQSAFASLATTAALSTALRNIQALPESLEYTKGAGDVFNGTFDRIRRGLWDLIDYGKPLLFAGAPLPLVLFVTRKDQGSCSNERK 236
The following BLAST results are available for this feature:
BLAST of NO21G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900Expect = 4.40e-39 / Id = 43.68SequenceEWM22697.1
Match NameE-valueIdentityDescription
EWM22697.14.400e-3943.68hypothetical protein Naga_100340g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01970NO21G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01970.1NO21G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01970.1.cds1NO21G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01970.1.cds2NO21G01970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01970.1 ID=NO21G01970.1|Name=NO21G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ACAGGACATCGCTTGCCGCACCTTTTCCCACCCTATTCCGCGCCATGACA
TTGTCTGACTTTTTCTCCTACTCATCCTCTGTGCCTGCCGGCACCATCAG
CACTTCTACAAAAGCGACCGAGACTCAGGAACCCTCGCCCTGCGACGCCG
ACATAACGACGGCCACCTTCCTTATCGAGCCGCACCACCACCAAGAGCAG
GAGCGAGGGTACGAGGTTGACAAGTACGATGGAGCAGATAAAGAGGACTG
CAATAAAATTGCGGAGATGTTCACCCTTCGACTGGATAAGATGTGGGAGT
ACGCGCATGGGCATGTAAGCGACACATTGCGGAACCCAAAGGTGGTCTTG
GGGCTGGGGTGGCACGATGAGTCGAATGTGCCAATTGGCGAGGTAGACGT
GCAGTTCAGGGCCGTGTCTCTTGTCAAGGTGTTAGTCTGGCCACGCTGGA
CCGTCCCTTATGTGGACGTCAAGGTGCAAAGTGCTCCGGCTGCCAAAGCC
TTCAAGAGCGCCTTCAATGCCCTTAGTACCACTGCCGTGCATTCCACCGT
CATCCGACGCGTACAAGAGCTGTCGGATCCCGTGACAGTGACGGAGGACG
CGGGCGAAATTGGAGGGGGGAGATTTGATAAGGTGGAAAAAGGTGTGAGG
GGATTATTGTATTACACCTTACCACTGTTATTCATGGGGGTCCCCTTCCC
ACTGATGATGCTGGTGAACAGCAAGCGGAAGGGACTGTGGGGACAAGAGA
TGAAGTGAGGAAGGTGACTTGTGACTGGGTACGTGTATCAATAGAAAAGA
AGCAAAACACAATGAGTAATATCTCATGAGGGGAAGGCATGACGGGTGAT
GACTGAATTGATGTACCAGCGATAGCAAAGAAGTAAAAACAAGGAATATG
AAGGAATGAAAAGAG
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protein sequence of NO21G01970.1

>NO21G01970.1-protein ID=NO21G01970.1-protein|Name=NO21G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MTLSDFFSYSSSVPAGTISTSTKATETQEPSPCDADITTATFLIEPHHHQ
EQERGYEVDKYDGADKEDCNKIAEMFTLRLDKMWEYAHGHVSDTLRNPKV
VLGLGWHDESNVPIGEVDVQFRAVSLVKVLVWPRWTVPYVDVKVQSAPAA
KAFKSAFNALSTTAVHSTVIRRVQELSDPVTVTEDAGEIGGGRFDKVEKG
VRGLLYYTLPLLFMGVPFPLMMLVNSKRKGLWGQEMK*
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mRNA from alignment at chr21:577755..578844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01970.1 ID=NO21G01970.1|Name=NO21G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at chr21:577755..578844- (Nannochloropsis oceanica)
ACAGGACATCGCTTGCCGCACCTTTTCCCACCCTATTCCGCGCCATGACA
TTGTCTGACTTTTTCTCCTACTCATCCTCTGTGCCTGCCGGCACCATCAG
CACTTCTACAAAAGCGACCGAGACTCAGGAACCCTCGCCCTGCGACGCCG
ACATAACGACGGCCACCTTCCTTATCGAGCCGCACCACCACCAAGAGCAG
GAGCGAGGGTACGAGGTTGACAAGTACGATGGAGCAGATAAAGAGGACTG
CAATAAAATTGCGGAGATGTTCACCCTTCGACTGGATAAGATGTGGGAGT
ACGCGCATGGGCATGTAAGCGACACATTGCGGAACCCAAAGGTGGTCTTG
GGGCTGGGGTGGCACGATGAGTCGAATGTGCCAATTGGCGAGGTAGACGT
GCAGTTCAGGGCCGTGTCTCTTGTCAAGGTGTTAGTCTGGTAAGTATTAT
ATGATTATGCTTATTGAATGTGGGAGATGAGTTTGCAGGGACGTGTCAAA
GGAAAAAGGGTTTTGGTGCGCAGGTGTGTATGTGAGGGGAACGAGCGCGA
GGAAGACAAGGACGTTTAATAACTCATCATTCTACGACATTAAACTCGCA
CACACAATTCACAGGCCACGCTGGACCGTCCCTTATGTGGACGTCAAGGT
GCAAAGTGCTCCGGCTGCCAAAGCCTTCAAGAGCGCCTTCAATGCCCTTA
GTACCACTGCCGTGCATTCCACCGTCATCCGACGCGTACAAGAGCTGTCG
GATCCCGTGACAGTGACGGAGGACGCGGGCGAAATTGGAGGGGGGAGATT
TGATAAGGTGGAAAAAGGTGTGAGGGGATTATTGTATTACACCTTACCAC
TGTTATTCATGGGGGTCCCCTTCCCACTGATGATGCTGGTGAACAGCAAG
CGGAAGGGACTGTGGGGACAAGAGATGAAGTGAGGAAGGTGACTTGTGAC
TGGGTACGTGTATCAATAGAAAAGAAGCAAAACACAATGAGTAATATCTC
ATGAGGGGAAGGCATGACGGGTGATGACTGAATTGATGTACCAGCGATAG
CAAAGAAGTAAAAACAAGGAATATGAAGGAATGAAAAGAG
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Coding sequence (CDS) from alignment at chr21:577755..578844-

>NO21G01970.1 ID=NO21G01970.1|Name=NO21G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr21:577755..578844- (Nannochloropsis oceanica)
ATGACATTGTCTGACTTTTTCTCCTACTCATCCTCTGTGCCTGCCGGCAC
CATCAGCACTTCTACAAAAGCGACCGAGACTCAGGAACCCTCGCCCTGCG
ACGCCGACATAACGACGGCCACCTTCCTTATCGAGCCGCACCACCACCAA
GAGCAGGAGCGAGGGTACGAGGTTGACAAGTACGATGGAGCAGATAAAGA
GGACTGCAATAAAATTGCGGAGATGTTCACCCTTCGACTGGATAAGATGT
GGGAGTACGCGCATGGGCATGTAAGCGACACATTGCGGAACCCAAAGGTG
GTCTTGGGGCTGGGGTGGCACGATGAGTCGAATGTGCCAATTGGCGAGGT
AGACGTGCAGTTCAGGGCCGTGTCTCTTGTCAAGGTGTTAGTCTGGCCAC
GCTGGACCGTCCCTTATGTGGACGTCAAGGTGCAAAGTGCTCCGGCTGCC
AAAGCCTTCAAGAGCGCCTTCAATGCCCTTAGTACCACTGCCGTGCATTC
CACCGTCATCCGACGCGTACAAGAGCTGTCGGATCCCGTGACAGTGACGG
AGGACGCGGGCGAAATTGGAGGGGGGAGATTTGATAAGGTGGAAAAAGGT
GTGAGGGGATTATTGTATTACACCTTACCACTGTTATTCATGGGGGTCCC
CTTCCCACTGATGATGCTGGTGAACAGCAAGCGGAAGGGACTGTGGGGAC
AAGAGATGAAGTGA
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Synonyms
Publications