NO21G01950, NO21G01950 (gene) Nannochloropsis oceanica

Overview
NameNO21G01950
Unique NameNO21G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2222
Alignment locationchr21:574177..576398 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:574177..576398 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01950 vs. NCBI_GenBank
Match: EWM22696.1 (hypothetical protein Naga_100340g5 [Nannochloropsis gaditana])

HSP 1 Score: 193.0 bits (489), Expect = 3.100e-45
Identity = 112/213 (52.58%), Postives = 133/213 (62.44%), Query Frame = 0 
Query:  451 MTLYAHPDFEAEFGGLVGTVFAEAVSGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPFFSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREEGYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGA----VASTSQPSLELPPLTNFLF 660
            MTLYAHP+FEAEFG LVGTV A+AVS                                    L PAS S AGPGT + Y+AFVCTGRLDDP+H HAL PF +AGAS+VLFL+RAGRG+Q+ARIQP QEL GLPCFEFLVFK+ LQR  E+GY +EV  LRSF+ +++PSL R   A  G A EGV   G       + +     LP LT++LF
Sbjct:   32 MTLYAHPEFEAEFGELVGTVIADAVSDDPPGAKTSRGTKGGHEAASPTPP-----------CLLPASPSKAGPGTLLLYVAFVCTGRLDDPIHTHALKPFLAAGASVVLFLLRAGRGNQVARIQPRQELTGLPCFEFLVFKRALQR-TEDGYAKEVRLLRSFLVKSLPSL-RVQSADLGAATEGVTAEGVRPGKYGAPADEQKGLPSLTDYLF 231
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BLAST of NO21G01950 vs. NCBI_GenBank
Match: XP_005854337.1 (hypothetical protein NGA_0186100, partial [Nannochloropsis gaditana CCMP526] >EKU22021.1 hypothetical protein NGA_0186100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 129.8 bits (325), Expect = 3.300e-26
Identity = 76/126 (60.32%), Postives = 89/126 (70.63%), Query Frame = 0 
Query:   99 LLCLQQEHRSLRTQFHAVQHGASVLGEEAARANEELDRCTELVENLEAHCLECEEEIDTLNRALGRVEEVKEDAEQQQRVWEERCRRTEGMMRLVLEREQGLLKENERLREELKEIRRRAIEYEGM 225
            L  L++E RSL  +  A   GA +LGEEAARANEEL R TEL++NLEAH  E E E      AL   E  +EDAEQQQ VWEERCRRTEG++ LVLERE+ L++E   LREE+ EIRRRA EYE M
Sbjct:  328 LEALEEECRSLSVRLQAAHKGAQILGEEAARANEELGRRTELLQNLEAHANEREAEXXXXRAALRGAEAGREDAEQQQGVWEERCRRTEGVLGLVLEREKRLMREKLELREEMTEIRRRAYEYERM 453
The following BLAST results are available for this feature:
BLAST of NO21G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22696.13.100e-4552.58hypothetical protein Naga_100340g5 [Nannochloropsi... [more]
XP_005854337.13.300e-2660.32hypothetical protein NGA_0186100, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01950.1NO21G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100340g5gene7745Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01950.1NO21G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01950 ID=NO21G01950|Name=NO21G01950|organism=Nannochloropsis oceanica|type=gene|length=2222bp
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGgtgcgagggaggtagggaggaagagaagaaaggtg
gcagggaggaagggaggggcatgtgtgttctgcctttgactgaatcaacc
acaccacatggcgtacacgggatttctttctcaccagccctcctccctct
tgaccctcaatgtacagAACTCGTCGAGAACCTGGAAGCGCACTGTTTGG
AATGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAG
GAAGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATG
TAGGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGC
TCCTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGA
CGAGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGG
CAGGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGG
AGGGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGG
AAGCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCAC
GTCCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTG
CGCTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGA
AATAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAG
AAGAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAG
GAGTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGA
GAAGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGG
ACCTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGG
AGGGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAA
CAGGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTAT
CGCAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCT
TTATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTG
GTCGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAG
TACTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAG
CATCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCT
TCCCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGT
CTGCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCT
TCTTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGG
GGGAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCC
GTGCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGG
AGGGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCG
ATGCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGA
AGGAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGG
AGTTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGC
GAAGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGA
CATAGAGTATCTGGTACCCTGA
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protein sequence of NO21G01950.1

>NO21G01950.1-protein ID=NO21G01950.1-protein|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp
MDVLERYGELRRVEQQQVQQWVGDDGEVMVGMGKGGGRESEAVLPTPYHC
HQHEREDEQEQEKEEGDKQQQQEHRPRQPHQEQQQKQHQQQQQQLEQQLL
CLQQEHRSLRTQFHAVQHGASVLGEEAARANEELDRCTELVENLEAHCLE
CEEEIDTLNRALGRVEEVKEDAEQQQRVWEERCRRTEGMMRLVLEREQGL
LKENERLREELKEIRRRAIEYEGMVAAAAAAGGRRRMGRESRREGGGGRE
GGPLAMAPTRSGGRVGKLGMFPSPSPLPNVSFTSSSLSSLSSPPTSCASA
LTALDANTEARAAVGGNRAEEGKGGSGKRLTGRRMFMAVPDALRRVNVKG
VGESGRGGGEGRDGMGEDGPQGQLGRPRGISEGPSTVYLAQEEGAERREE
GEDKEEEKAQKEQEQEQERKPQQLVKMTMAATIATPEEEGGKEGGREGLF
MTLYAHPDFEAEFGGLVGTVFAEAVSGIGGGRSTASSSSSSSRSSSSKTA
SSESSSPSPSFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPF
FSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREE
GYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGAVASTSQPSLE
LPPLTNFLFDSSSLSGEEQRHQLRHEEENGGDDIEYLVP*
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Synonyms
Publications