NO21G01950.1, NO21G01950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01950.1
Unique NameNO21G01950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2070
Alignment locationchr21:574177..576398 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:574177..576398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01950.1 vs.
Match: EWM22696.1 (hypothetical protein Naga_100340g5 [Nannochloropsis gaditana])

HSP 1 Score: 199.1 bits (505), Expect = 4.400e-47
Identity = 126/247 (51.01%), Postives = 159/247 (64.37%), Query Frame = 0 
Query:  430 AATIATPEEEGGKEGGREGLFMTLYAHPDFEAEFGGLVGTVFAEAVSGIGGGRSTASSSSSSSRSSSSKTASSESSSPSPSFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPFFSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREEGYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGA----VASTSQPSLELPPLTNFLFDSSSLSGEEQRHQ 673
            AA      E+  ++ G EG+ MTLYAHP+FEAEFG LVGTV A+AVS    G  T+  +              E++SP+P  LL PAS S AGPGT + Y+AFVCTGRLDDP+H HAL PF +AGAS+VLFL+RAGRG+Q+ARIQP QEL GLPCFEFLVFK+ LQR  E+GY +EV  LRSF+ +++PSL R   A  G A EGV   G       + +     LP LT++LF   + +     H+
Sbjct:   13 AACKEDDSEQAARDRG-EGV-MTLYAHPEFEAEFGELVGTVIADAVSDDPPGAKTSRGTKGGH----------EAASPTPPCLL-PASPSKAGPGTLLLYVAFVCTGRLDDPIHTHALKPFLAAGASVVLFLLRAGRGNQVARIQPRQELTGLPCFEFLVFKRALQR-TEDGYAKEVRLLRSFLVKSLPSL-RVQSADLGAATEGVTAEGVRPGKYGAPADEQKGLPSLTDYLFRHRTDNNNSHHHE 244
The following BLAST results are available for this feature:
BLAST of NO21G01950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000SequenceEWM22696.1
Match NameE-valueIdentityDescription
EWM22696.14.400e-4751.01hypothetical protein Naga_100340g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01950NO21G01950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01950.1NO21G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01950.1.cds1NO21G01950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01950.1.cds2NO21G01950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01950.1 ID=NO21G01950.1|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGAACTCGTCGAGAACCTGGAAGCGCACTGTTTGGAA
TGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAGGA
AGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATGTA
GGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGCTC
CTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGACG
AGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGGCA
GGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGGAG
GGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGGAA
GCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCACGT
CCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTGCG
CTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGAAA
TAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAGAA
GAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAGGA
GTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGAGA
AGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGGAC
CTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGGAG
GGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAACA
GGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTATCG
CAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCTTT
ATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTGGT
CGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAGTA
CTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAGCA
TCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCTTC
CCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGTCT
GCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCTTC
TTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGGGG
GAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCCGT
GCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGGAG
GGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCGAT
GCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGAAG
GAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGGAG
TTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGCGA
AGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGACA
TAGAGTATCTGGTACCCTGA
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protein sequence of NO21G01950.1

>NO21G01950.1-protein ID=NO21G01950.1-protein|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp
MDVLERYGELRRVEQQQVQQWVGDDGEVMVGMGKGGGRESEAVLPTPYHC
HQHEREDEQEQEKEEGDKQQQQEHRPRQPHQEQQQKQHQQQQQQLEQQLL
CLQQEHRSLRTQFHAVQHGASVLGEEAARANEELDRCTELVENLEAHCLE
CEEEIDTLNRALGRVEEVKEDAEQQQRVWEERCRRTEGMMRLVLEREQGL
LKENERLREELKEIRRRAIEYEGMVAAAAAAGGRRRMGRESRREGGGGRE
GGPLAMAPTRSGGRVGKLGMFPSPSPLPNVSFTSSSLSSLSSPPTSCASA
LTALDANTEARAAVGGNRAEEGKGGSGKRLTGRRMFMAVPDALRRVNVKG
VGESGRGGGEGRDGMGEDGPQGQLGRPRGISEGPSTVYLAQEEGAERREE
GEDKEEEKAQKEQEQEQERKPQQLVKMTMAATIATPEEEGGKEGGREGLF
MTLYAHPDFEAEFGGLVGTVFAEAVSGIGGGRSTASSSSSSSRSSSSKTA
SSESSSPSPSFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPF
FSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREE
GYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGAVASTSQPSLE
LPPLTNFLFDSSSLSGEEQRHQLRHEEENGGDDIEYLVP*
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mRNA from alignment at chr21:574177..576398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01950.1 ID=NO21G01950.1|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2222bp|location=Sequence derived from alignment at chr21:574177..576398- (Nannochloropsis oceanica)
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGGTGCGAGGGAGGTAGGGAGGAAGAGAAGAAAGGTG
GCAGGGAGGAAGGGAGGGGCATGTGTGTTCTGCCTTTGACTGAATCAACC
ACACCACATGGCGTACACGGGATTTCTTTCTCACCAGCCCTCCTCCCTCT
TGACCCTCAATGTACAGAACTCGTCGAGAACCTGGAAGCGCACTGTTTGG
AATGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAG
GAAGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATG
TAGGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGC
TCCTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGA
CGAGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGG
CAGGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGG
AGGGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGG
AAGCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCAC
GTCCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTG
CGCTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGA
AATAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAG
AAGAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAG
GAGTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGA
GAAGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGG
ACCTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGG
AGGGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAA
CAGGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTAT
CGCAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCT
TTATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTG
GTCGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAG
TACTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAG
CATCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCT
TCCCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGT
CTGCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCT
TCTTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGG
GGGAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCC
GTGCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGG
AGGGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCG
ATGCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGA
AGGAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGG
AGTTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGC
GAAGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGA
CATAGAGTATCTGGTACCCTGA
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Coding sequence (CDS) from alignment at chr21:574177..576398-

>NO21G01950.1 ID=NO21G01950.1|Name=NO21G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at chr21:574177..576398- (Nannochloropsis oceanica)
ATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACA
GGTGCAGCAGTGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGA
AGGGAGGAGGGAGGGAGAGCGAAGCAGTCCTCCCGACTCCCTATCATTGT
CACCAACATGAAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGA
TAAGCAGCAACAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGC
AGCAGAAGCAACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTG
TGTCTACAGCAAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCA
GCATGGCGCAAGTGTGCTGGGAGAGGAAGCGGCCAGGGCGAACGAAGAAT
TGGACCGATGTACAGAACTCGTCGAGAACCTGGAAGCGCACTGTTTGGAA
TGCGAGGAGGAGATAGACACCTTAAACCGAGCCCTGGGCCGGGTGGAGGA
AGTAAAGGAGGATGCCGAGCAGCAACAGCGGGTGTGGGAGGAGAGATGTA
GGAGGACTGAAGGGATGATGCGGCTGGTGTTGGAGAGAGAGCAAGGGCTC
CTGAAAGAGAACGAACGCCTGCGGGAAGAGCTGAAGGAAATAAGGAGACG
AGCGATCGAGTATGAAGGGATGGTAGCTGCTGCTGCGGCAGCAGGAGGCA
GGAGGAGGATGGGGAGGGAGAGCAGGAGGGAGGGAGGTGGAGGAAGGGAG
GGAGGACCGCTGGCCATGGCGCCGACGAGGTCTGGAGGGAGGGTGGGGAA
GCTGGGCATGTTTCCATCGCCTTCCCCCTTGCCTAATGTTTCTTTCACGT
CCTCCTCCCTCTCCTCCCTCTCCTCTCCTCCCACCTCTTGTGCGTCTGCG
CTCACTGCGCTCGATGCGAATACGGAGGCGAGAGCTGCTGTGGGCGGAAA
TAGGGCAGAGGAAGGGAAAGGAGGGAGCGGGAAGAGATTGACTGGAAGAA
GAATGTTTATGGCCGTGCCCGACGCGCTGAGAAGGGTGAATGTGAAAGGA
GTAGGAGAATCAGGTAGAGGGGGAGGAGAGGGACGAGATGGTATGGGAGA
AGACGGGCCACAGGGCCAGCTGGGCCGGCCGCGAGGGATCAGTGAAGGAC
CTTCAACTGTTTATTTGGCGCAGGAGGAAGGAGCGGAGCGGCGAGAGGAG
GGGGAGGATAAAGAAGAAGAGAAAGCTCAAAAAGAGCAGGAGCAAGAACA
GGAGCGGAAGCCGCAGCAGCTTGTGAAGATGACCATGGCGGCCACTATCG
CAACACCAGAAGAGGAGGGAGGGAAAGAGGGAGGGAGGGAAGGACTCTTT
ATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTGGT
CGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAGTA
CTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAGCA
TCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCTTC
CCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGTCT
GCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCTTC
TTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGGGG
GAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCCGT
GCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGGAG
GGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCGAT
GCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGAAG
GAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGGAG
TTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGCGA
AGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGACA
TAGAGTATCTGGTACCCTGA
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Synonyms
Publications