NO21G01940, NO21G01940 (gene) Nannochloropsis oceanica

Overview
NameNO21G01940
Unique NameNO21G01940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length399
Alignment locationchr21:573140..573538 -

Link to JBrowse

Properties
Property NameValue
DescriptionTex-like protein, HTH domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:573140..573538 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01940 vs. NCBI_GenBank
Match: EWM22699.1 (Tex-like protein, HTH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 218.0 bits (554), Expect = 1.800e-53
Identity = 104/132 (78.79%), Postives = 117/132 (88.64%), Query Frame = 0 
Query:    1 MPHPLLLGWLLKQANIFNLYGAMKAYGFHRVYRRLLEANNRLMDKPQDRQIVQDTLKQALRAPNQVVQILDESHTVAFLARYAKELAADLETNAPPFFVKAAKVVLQKTPMGKLVDVFAEWQDTSRSKKGKP 133
            MPHPLL+GWL KQAN+ NLYGAMKAYGFHRVYRRLLEANNRLMD  QDR+IV++ +KQA+RAPN VV+ILDESHTVAFL RYAKEL   LET APPFFV AA+VVLQKTPMG+L+ VF++WQDTSR KKG P
Sbjct:   10 MPHPLLMGWLFKQANLMNLYGAMKAYGFHRVYRRLLEANNRLMDNSQDRRIVRENIKQAMRAPNHVVEILDESHTVAFLTRYAKELTTGLETRAPPFFVNAARVVLQKTPMGRLLRVFSDWQDTSRRKKGTP 141
The following BLAST results are available for this feature:
BLAST of NO21G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350Expect = 1.80e-53 / Id = 78.79SequenceEWM22699.1
Match NameE-valueIdentityDescription
EWM22699.11.800e-5378.79Tex-like protein, HTH domain protein [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004585NSK004585Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01940.1NO21G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641877gene_8161Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100340g4gene7746Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01940.1NO21G01940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01940 ID=NO21G01940|Name=NO21G01940|organism=Nannochloropsis oceanica|type=gene|length=399bp
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
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protein sequence of NO21G01940.1

>NO21G01940.1-protein ID=NO21G01940.1-protein|Name=NO21G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MPHPLLLGWLLKQANIFNLYGAMKAYGFHRVYRRLLEANNRLMDKPQDRQ
IVQDTLKQALRAPNQVVQILDESHTVAFLARYAKELAADLETNAPPFFVK
AAKVVLQKTPMGKLVDVFAEWQDTSRSKKGKP*
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Synonyms
Publications