NO21G01940.1, NO21G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01940.1
Unique NameNO21G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length399
Alignment locationchr21:573140..573538 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:573140..573538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01940.1 vs.
Match: EWM22699.1 (Tex-like protein, HTH domain protein [Nannochloropsis gaditana])

HSP 1 Score: 218.0 bits (554), Expect = 1.800e-53
Identity = 104/132 (78.79%), Postives = 117/132 (88.64%), Query Frame = 0 
Query:    1 MPHPLLLGWLLKQANIFNLYGAMKAYGFHRVYRRLLEANNRLMDKPQDRQIVQDTLKQALRAPNQVVQILDESHTVAFLARYAKELAADLETNAPPFFVKAAKVVLQKTPMGKLVDVFAEWQDTSRSKKGKP 133
            MPHPLL+GWL KQAN+ NLYGAMKAYGFHRVYRRLLEANNRLMD  QDR+IV++ +KQA+RAPN VV+ILDESHTVAFL RYAKEL   LET APPFFV AA+VVLQKTPMG+L+ VF++WQDTSR KKG P
Sbjct:   10 MPHPLLMGWLFKQANLMNLYGAMKAYGFHRVYRRLLEANNRLMDNSQDRRIVRENIKQAMRAPNHVVEILDESHTVAFLTRYAKELTTGLETRAPPFFVNAARVVLQKTPMGRLLRVFSDWQDTSRRKKGTP 141
The following BLAST results are available for this feature:
BLAST of NO21G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300350Expect = 1.80e-53 / Id = 78.79SequenceEWM22699.1
Match NameE-valueIdentityDescription
EWM22699.11.800e-5378.79Tex-like protein, HTH domain protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01940NO21G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01940.1NO21G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01940.1.cds1NO21G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01940.1 ID=NO21G01940.1|Name=NO21G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=399bp
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
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protein sequence of NO21G01940.1

>NO21G01940.1-protein ID=NO21G01940.1-protein|Name=NO21G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MPHPLLLGWLLKQANIFNLYGAMKAYGFHRVYRRLLEANNRLMDKPQDRQ
IVQDTLKQALRAPNQVVQILDESHTVAFLARYAKELAADLETNAPPFFVK
AAKVVLQKTPMGKLVDVFAEWQDTSRSKKGKP*
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mRNA from alignment at chr21:573140..573538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01940.1 ID=NO21G01940.1|Name=NO21G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=399bp|location=Sequence derived from alignment at chr21:573140..573538- (Nannochloropsis oceanica)
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
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Coding sequence (CDS) from alignment at chr21:573140..573538-

>NO21G01940.1 ID=NO21G01940.1|Name=NO21G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at chr21:573140..573538- (Nannochloropsis oceanica)
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
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Synonyms
Publications