NO21G01920, NO21G01920 (gene) Nannochloropsis oceanica

Overview
NameNO21G01920
Unique NameNO21G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2256
Alignment locationchr21:568779..571034 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:568779..571034 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01920 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 79.3 bits (194), Expect = 4.200e-11
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 0 
Query:  475 SACQAVLSSCDLLHMILSFFLLPGEEGKEGDAKEGRQTLNTLSLVNKKFKALSSWDKYWRPVATGLLPVLGVPRR 550
            SA  + LSS DLLHMI  F L           +E R  L TLSLVN++F AL+ W++YWRPVA GLLPVL VPRR
Sbjct:  166 SARLSALSSPDLLHMIFPFLL------HRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRR 234
The following BLAST results are available for this feature:
BLAST of NO21G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22694.14.200e-1156.00hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01920.1NO21G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100340g3gene7747Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01920.1NO21G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01920 ID=NO21G01920|Name=NO21G01920|organism=Nannochloropsis oceanica|type=gene|length=2256bp
CTCGGCCCAAGTAGCTTTTCAGGCTGCTCTTGAATTATCACCAAAGCAGT
CATGCGCCTCTGTTGTCATGCATCTATGAGGCCAATGGCGCATCACGCAG
CTCCTATCTTACCACAGCATGCTACTTGTGACTGTGGAAATTATGCCACT
TCCCTTGCTTGCTGAGGGGATGCTTGCTGAAGTATGTCAAAACACCTTGG
GATGCATATATGTGCAACAGTAACAGTAAAAGTATCCAACATCACCCCCC
TTCACACTGCTCACCCACGCCCAAACCAATTGCATCTCCCCACAAACAAC
ATTCACGAAGACTGCTATGGATGATGAGGGGGACAAGCGCGGACAGGCCG
AGCAACTGCTTTCATTTTTGGAGCTTGTGCCTTCCAATGCCGAAGgtacg
caagtgttgatatgccgcccattccgaattggcttatgcttgtattcggg
cggatctatgggaaaatgtacatgcatgcacaagtgaaaaagatgtgaga
taaggcgcctcttttgagtatgccagccctttcttcagtccttccgactc
tctcgcctatccacatttatccttcttgcacatacactgaccttcataca
gAACTAAGGCAGCTTCTGCGTCTGCAAGCCTCATCTCAAAAAAGCGGTCT
AATGGATACCGAGCTACCGGTAATACACAGCACTGCCTCAAATTACACCC
ACCCAAAGGCCGAGAAAGGAGACGCGGGCTCAAAAACTGCAGCAGCTTCC
CCATTTCCTCCTGTAGCAGCTGTTGCAGCAGCAACAGCAGCATCATACCC
TCCCGCCTCTTCTATCCCCAGCAGCAATGGATTAGTCGGCATGACACATG
CCCGTCTTCGGCAGCTAGTCTCTGCGTTGAACAGCATTTTGCAGGAAAGC
AGTGAAGAGGACAACTCTTTACGGCAGCAGCAGCACCAGCAGCAGCACCA
GCAGCAGCAATCATCTTTCCACAACCATCACGGCTGCTGCAGCAGCAGCA
GTAGCATCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CGACAGCAACAAAAACAATAGCAGCAACCCCAATAGCGGCTTTCCCAGCA
GCTACACCTGCACCATCAAAAAGCCTGTTTCCTCCGTCAATTTCCCTCCC
ACCTCCTCGCCTTCCTTCTCTTCGTCCTCCTTCTCTTCCCGCATCCCCAC
ATCAGCTTCATTTCCCTCATTCTCCTCCCTCTCCTCCTCCGCTGGCTCTT
GCTCCCCCCCACCTACCCATACTGGCGCTTCAGCGGCCGCAACTATTGCC
TCCGAGGGGGCTTCTTCCCCTTCCTCCCTCCCTCCCTGCTCCTCCCCTTC
CTCCTTCATTCCCTGCCACTCTCATTCCTCCTTGTTGTCTGCGTCGAGAA
GTAGCCTGGTCGAAAGGGGAGGGTGTGGAGATTGTGGTGGAGGAGAAGAA
AGAGGAGGAAAAGGTAGTGATGGTGGTTCAAGAAGAGGGTCGCTGCCTAC
AGTAGGCTCGCATGAACGCAGCGACAGCGGCAGCGACAGCAACAGCAACA
GCAACTGTGGTAGCCATAGCGGTGGGGCCGGGCCAGCGATGGAGACATCT
CTGCCTCTACCCTCTATCTTCCAGTCCTCGTCCCTCCTTCCCCCACCTCC
CGCCCTCCATCGTCACCCCTACCACCACCACCACCACCACACTAGCAGCA
GCAACAGCAACCACCACCATCCCTCCTGCCCCTCCTCCTCTCCCTCCTCT
TCTTCCTCCTCCTCCTCCTCTTCTGTACCTTCCATGAAGGGCCCCCATCT
TCCTTTTTTGCTGACCTCTCTCTCCCGCGCCCTGGCCAGCACTTCCCTCT
CGCCCCCCTCTCCTTCCCTCTTACTCCCCTCCTCCTCTTCGCCCTCCGCC
TGCCAGGCGGTTCTCTCCTCTTGTGATCTCTTGCACATGATCCTATCTTT
CTTCCTCCTGCCGGGGGAGGAAGGGAAGGAGGGCGATGCCAAGGAAGGGC
GCCAAACGCTCAACACGCTCTCCCTTGTCAATAAGAAGTTCAAAGCCCTG
TCATCCTGGGATAAATACTGGAGGCCGGTGGCGACGGGTTTGCTGCCAGT
ATTGGGGGTACCACGCCGGCAGCAGCGAGGGAAGGAGGGAAGGGGGGAGG
GAGGAAGGGAGGGGGGAGGGAGGAGGAGCAGGGGGAGTACCGGGCCTACT
TGGTGA
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protein sequence of NO21G01920.1

>NO21G01920.1-protein ID=NO21G01920.1-protein|Name=NO21G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MDDEGDKRGQAEQLLSFLELVPSNAEELRQLLRLQASSQKSGLMDTELPV
IHSTASNYTHPKAEKGDAGSKTAAASPFPPVAAVAAATAASYPPASSIPS
SNGLVGMTHARLRQLVSALNSILQESSEEDNSLRQQQHQQQHQQQQSSFH
NHHGCCSSSSSINNSSSSSSNNNNNNNNNNNNNNNNNNNNNNNDSNKNNS
SNPNSGFPSSYTCTIKKPVSSVNFPPTSSPSFSSSSFSSRIPTSASFPSF
SSLSSSAGSCSPPPTHTGASAAATIASEGASSPSSLPPCSSPSSFIPCHS
HSSLLSASRSSLVERGGCGDCGGGEERGGKGSDGGSRRGSLPTVGSHERS
DSGSDSNSNSNCGSHSGGAGPAMETSLPLPSIFQSSSLLPPPPALHRHPY
HHHHHHTSSSNSNHHHPSCPSSSPSSSSSSSSSSVPSMKGPHLPFLLTSL
SRALASTSLSPPSPSLLLPSSSSPSACQAVLSSCDLLHMILSFFLLPGEE
GKEGDAKEGRQTLNTLSLVNKKFKALSSWDKYWRPVATGLLPVLGVPRRQ
QRGKEGRGEGGREGGGRRSRGSTGPTW*
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Synonyms
Publications