NO21G01920.1, NO21G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01920.1
Unique NameNO21G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2050
Alignment locationchr21:568779..571034 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:568779..571034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01920.1 vs.
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 1.200e-18
Identity = 100/222 (45.05%), Postives = 119/222 (53.60%), Query Frame = 0 
Query:  367 GGAGPAM-----ETSLPLPSIFQSSSLLPPP--PALHRHPYHHHHHHTSSSNSNHHHPSCPSSSPSSSSSSSSSSVPSMKGPHLPFLLTSLSRALASTSLSPPSPSLLLPSSSSPS--ACQAVLSSCDLLHMILSFFLLPGEEGKEGDAKEGRQTLNTLSLVNKKFKALSSWDKYWRPVATGLLPVLGV-----PRRQQRGKEGRGEGGREGGGRRSRGSTG 575
            GG+GP       + +   P+   S +LLP P  P LHRH Y  H HH          PS PS SPSS   SSSSS            L+SLS AL+S S++ P P+  LPS+  PS  A  + LSS DLLHMI  F L           +E R  L TLSLVN++F AL+ W++YWRPVA GLLPVL V     PRRQ+  K  RG G  EGGGRR     G
Sbjct:   65 GGSGPGSSWIHRDLAARAPA---SQALLPTPSAPPLHRHHYQQHLHHAHQPA----FPSSPSPSPSSFFPSSSSSTL--------LALSSLSHALSSPSVAYP-PTAFLPSAPLPSLSARLSALSSPDLLHMIFPFLL------HRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAG--EGGGRRGEDFRG 262
The following BLAST results are available for this feature:
BLAST of NO21G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000SequenceEWM22694.1
Match NameE-valueIdentityDescription
EWM22694.11.200e-1845.05hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01920NO21G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01920.1NO21G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01920.1.cds1NO21G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01920.1.cds2NO21G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01920.1 ID=NO21G01920.1|Name=NO21G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp
CTCGGCCCAAGTAGCTTTTCAGGCTGCTCTTGAATTATCACCAAAGCAGT
CATGCGCCTCTGTTGTCATGCATCTATGAGGCCAATGGCGCATCACGCAG
CTCCTATCTTACCACAGCATGCTACTTGTGACTGTGGAAATTATGCCACT
TCCCTTGCTTGCTGAGGGGATGCTTGCTGAAGTATGTCAAAACACCTTGG
GATGCATATATGTGCAACAGTAACAGTAAAAGTATCCAACATCACCCCCC
TTCACACTGCTCACCCACGCCCAAACCAATTGCATCTCCCCACAAACAAC
ATTCACGAAGACTGCTATGGATGATGAGGGGGACAAGCGCGGACAGGCCG
AGCAACTGCTTTCATTTTTGGAGCTTGTGCCTTCCAATGCCGAAGAACTA
AGGCAGCTTCTGCGTCTGCAAGCCTCATCTCAAAAAAGCGGTCTAATGGA
TACCGAGCTACCGGTAATACACAGCACTGCCTCAAATTACACCCACCCAA
AGGCCGAGAAAGGAGACGCGGGCTCAAAAACTGCAGCAGCTTCCCCATTT
CCTCCTGTAGCAGCTGTTGCAGCAGCAACAGCAGCATCATACCCTCCCGC
CTCTTCTATCCCCAGCAGCAATGGATTAGTCGGCATGACACATGCCCGTC
TTCGGCAGCTAGTCTCTGCGTTGAACAGCATTTTGCAGGAAAGCAGTGAA
GAGGACAACTCTTTACGGCAGCAGCAGCACCAGCAGCAGCACCAGCAGCA
GCAATCATCTTTCCACAACCATCACGGCTGCTGCAGCAGCAGCAGTAGCA
TCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGACAG
CAACAAAAACAATAGCAGCAACCCCAATAGCGGCTTTCCCAGCAGCTACA
CCTGCACCATCAAAAAGCCTGTTTCCTCCGTCAATTTCCCTCCCACCTCC
TCGCCTTCCTTCTCTTCGTCCTCCTTCTCTTCCCGCATCCCCACATCAGC
TTCATTTCCCTCATTCTCCTCCCTCTCCTCCTCCGCTGGCTCTTGCTCCC
CCCCACCTACCCATACTGGCGCTTCAGCGGCCGCAACTATTGCCTCCGAG
GGGGCTTCTTCCCCTTCCTCCCTCCCTCCCTGCTCCTCCCCTTCCTCCTT
CATTCCCTGCCACTCTCATTCCTCCTTGTTGTCTGCGTCGAGAAGTAGCC
TGGTCGAAAGGGGAGGGTGTGGAGATTGTGGTGGAGGAGAAGAAAGAGGA
GGAAAAGGTAGTGATGGTGGTTCAAGAAGAGGGTCGCTGCCTACAGTAGG
CTCGCATGAACGCAGCGACAGCGGCAGCGACAGCAACAGCAACAGCAACT
GTGGTAGCCATAGCGGTGGGGCCGGGCCAGCGATGGAGACATCTCTGCCT
CTACCCTCTATCTTCCAGTCCTCGTCCCTCCTTCCCCCACCTCCCGCCCT
CCATCGTCACCCCTACCACCACCACCACCACCACACTAGCAGCAGCAACA
GCAACCACCACCATCCCTCCTGCCCCTCCTCCTCTCCCTCCTCTTCTTCC
TCCTCCTCCTCCTCTTCTGTACCTTCCATGAAGGGCCCCCATCTTCCTTT
TTTGCTGACCTCTCTCTCCCGCGCCCTGGCCAGCACTTCCCTCTCGCCCC
CCTCTCCTTCCCTCTTACTCCCCTCCTCCTCTTCGCCCTCCGCCTGCCAG
GCGGTTCTCTCCTCTTGTGATCTCTTGCACATGATCCTATCTTTCTTCCT
CCTGCCGGGGGAGGAAGGGAAGGAGGGCGATGCCAAGGAAGGGCGCCAAA
CGCTCAACACGCTCTCCCTTGTCAATAAGAAGTTCAAAGCCCTGTCATCC
TGGGATAAATACTGGAGGCCGGTGGCGACGGGTTTGCTGCCAGTATTGGG
GGTACCACGCCGGCAGCAGCGAGGGAAGGAGGGAAGGGGGGAGGGAGGAA
GGGAGGGGGGAGGGAGGAGGAGCAGGGGGAGTACCGGGCCTACTTGGTGA
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protein sequence of NO21G01920.1

>NO21G01920.1-protein ID=NO21G01920.1-protein|Name=NO21G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MDDEGDKRGQAEQLLSFLELVPSNAEELRQLLRLQASSQKSGLMDTELPV
IHSTASNYTHPKAEKGDAGSKTAAASPFPPVAAVAAATAASYPPASSIPS
SNGLVGMTHARLRQLVSALNSILQESSEEDNSLRQQQHQQQHQQQQSSFH
NHHGCCSSSSSINNSSSSSSNNNNNNNNNNNNNNNNNNNNNNNDSNKNNS
SNPNSGFPSSYTCTIKKPVSSVNFPPTSSPSFSSSSFSSRIPTSASFPSF
SSLSSSAGSCSPPPTHTGASAAATIASEGASSPSSLPPCSSPSSFIPCHS
HSSLLSASRSSLVERGGCGDCGGGEERGGKGSDGGSRRGSLPTVGSHERS
DSGSDSNSNSNCGSHSGGAGPAMETSLPLPSIFQSSSLLPPPPALHRHPY
HHHHHHTSSSNSNHHHPSCPSSSPSSSSSSSSSSVPSMKGPHLPFLLTSL
SRALASTSLSPPSPSLLLPSSSSPSACQAVLSSCDLLHMILSFFLLPGEE
GKEGDAKEGRQTLNTLSLVNKKFKALSSWDKYWRPVATGLLPVLGVPRRQ
QRGKEGRGEGGREGGGRRSRGSTGPTW*
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mRNA from alignment at chr21:568779..571034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01920.1 ID=NO21G01920.1|Name=NO21G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at chr21:568779..571034+ (Nannochloropsis oceanica)
CTCGGCCCAAGTAGCTTTTCAGGCTGCTCTTGAATTATCACCAAAGCAGT
CATGCGCCTCTGTTGTCATGCATCTATGAGGCCAATGGCGCATCACGCAG
CTCCTATCTTACCACAGCATGCTACTTGTGACTGTGGAAATTATGCCACT
TCCCTTGCTTGCTGAGGGGATGCTTGCTGAAGTATGTCAAAACACCTTGG
GATGCATATATGTGCAACAGTAACAGTAAAAGTATCCAACATCACCCCCC
TTCACACTGCTCACCCACGCCCAAACCAATTGCATCTCCCCACAAACAAC
ATTCACGAAGACTGCTATGGATGATGAGGGGGACAAGCGCGGACAGGCCG
AGCAACTGCTTTCATTTTTGGAGCTTGTGCCTTCCAATGCCGAAGGTACG
CAAGTGTTGATATGCCGCCCATTCCGAATTGGCTTATGCTTGTATTCGGG
CGGATCTATGGGAAAATGTACATGCATGCACAAGTGAAAAAGATGTGAGA
TAAGGCGCCTCTTTTGAGTATGCCAGCCCTTTCTTCAGTCCTTCCGACTC
TCTCGCCTATCCACATTTATCCTTCTTGCACATACACTGACCTTCATACA
GAACTAAGGCAGCTTCTGCGTCTGCAAGCCTCATCTCAAAAAAGCGGTCT
AATGGATACCGAGCTACCGGTAATACACAGCACTGCCTCAAATTACACCC
ACCCAAAGGCCGAGAAAGGAGACGCGGGCTCAAAAACTGCAGCAGCTTCC
CCATTTCCTCCTGTAGCAGCTGTTGCAGCAGCAACAGCAGCATCATACCC
TCCCGCCTCTTCTATCCCCAGCAGCAATGGATTAGTCGGCATGACACATG
CCCGTCTTCGGCAGCTAGTCTCTGCGTTGAACAGCATTTTGCAGGAAAGC
AGTGAAGAGGACAACTCTTTACGGCAGCAGCAGCACCAGCAGCAGCACCA
GCAGCAGCAATCATCTTTCCACAACCATCACGGCTGCTGCAGCAGCAGCA
GTAGCATCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CGACAGCAACAAAAACAATAGCAGCAACCCCAATAGCGGCTTTCCCAGCA
GCTACACCTGCACCATCAAAAAGCCTGTTTCCTCCGTCAATTTCCCTCCC
ACCTCCTCGCCTTCCTTCTCTTCGTCCTCCTTCTCTTCCCGCATCCCCAC
ATCAGCTTCATTTCCCTCATTCTCCTCCCTCTCCTCCTCCGCTGGCTCTT
GCTCCCCCCCACCTACCCATACTGGCGCTTCAGCGGCCGCAACTATTGCC
TCCGAGGGGGCTTCTTCCCCTTCCTCCCTCCCTCCCTGCTCCTCCCCTTC
CTCCTTCATTCCCTGCCACTCTCATTCCTCCTTGTTGTCTGCGTCGAGAA
GTAGCCTGGTCGAAAGGGGAGGGTGTGGAGATTGTGGTGGAGGAGAAGAA
AGAGGAGGAAAAGGTAGTGATGGTGGTTCAAGAAGAGGGTCGCTGCCTAC
AGTAGGCTCGCATGAACGCAGCGACAGCGGCAGCGACAGCAACAGCAACA
GCAACTGTGGTAGCCATAGCGGTGGGGCCGGGCCAGCGATGGAGACATCT
CTGCCTCTACCCTCTATCTTCCAGTCCTCGTCCCTCCTTCCCCCACCTCC
CGCCCTCCATCGTCACCCCTACCACCACCACCACCACCACACTAGCAGCA
GCAACAGCAACCACCACCATCCCTCCTGCCCCTCCTCCTCTCCCTCCTCT
TCTTCCTCCTCCTCCTCCTCTTCTGTACCTTCCATGAAGGGCCCCCATCT
TCCTTTTTTGCTGACCTCTCTCTCCCGCGCCCTGGCCAGCACTTCCCTCT
CGCCCCCCTCTCCTTCCCTCTTACTCCCCTCCTCCTCTTCGCCCTCCGCC
TGCCAGGCGGTTCTCTCCTCTTGTGATCTCTTGCACATGATCCTATCTTT
CTTCCTCCTGCCGGGGGAGGAAGGGAAGGAGGGCGATGCCAAGGAAGGGC
GCCAAACGCTCAACACGCTCTCCCTTGTCAATAAGAAGTTCAAAGCCCTG
TCATCCTGGGATAAATACTGGAGGCCGGTGGCGACGGGTTTGCTGCCAGT
ATTGGGGGTACCACGCCGGCAGCAGCGAGGGAAGGAGGGAAGGGGGGAGG
GAGGAAGGGAGGGGGGAGGGAGGAGGAGCAGGGGGAGTACCGGGCCTACT
TGGTGA
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Coding sequence (CDS) from alignment at chr21:568779..571034+

>NO21G01920.1 ID=NO21G01920.1|Name=NO21G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr21:568779..571034+ (Nannochloropsis oceanica)
ATGGATGATGAGGGGGACAAGCGCGGACAGGCCGAGCAACTGCTTTCATT
TTTGGAGCTTGTGCCTTCCAATGCCGAAGAACTAAGGCAGCTTCTGCGTC
TGCAAGCCTCATCTCAAAAAAGCGGTCTAATGGATACCGAGCTACCGGTA
ATACACAGCACTGCCTCAAATTACACCCACCCAAAGGCCGAGAAAGGAGA
CGCGGGCTCAAAAACTGCAGCAGCTTCCCCATTTCCTCCTGTAGCAGCTG
TTGCAGCAGCAACAGCAGCATCATACCCTCCCGCCTCTTCTATCCCCAGC
AGCAATGGATTAGTCGGCATGACACATGCCCGTCTTCGGCAGCTAGTCTC
TGCGTTGAACAGCATTTTGCAGGAAAGCAGTGAAGAGGACAACTCTTTAC
GGCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAATCATCTTTCCAC
AACCATCACGGCTGCTGCAGCAGCAGCAGTAGCATCAACAACAGCAGCAG
CAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACGACAGCAACAAAAACAATAGC
AGCAACCCCAATAGCGGCTTTCCCAGCAGCTACACCTGCACCATCAAAAA
GCCTGTTTCCTCCGTCAATTTCCCTCCCACCTCCTCGCCTTCCTTCTCTT
CGTCCTCCTTCTCTTCCCGCATCCCCACATCAGCTTCATTTCCCTCATTC
TCCTCCCTCTCCTCCTCCGCTGGCTCTTGCTCCCCCCCACCTACCCATAC
TGGCGCTTCAGCGGCCGCAACTATTGCCTCCGAGGGGGCTTCTTCCCCTT
CCTCCCTCCCTCCCTGCTCCTCCCCTTCCTCCTTCATTCCCTGCCACTCT
CATTCCTCCTTGTTGTCTGCGTCGAGAAGTAGCCTGGTCGAAAGGGGAGG
GTGTGGAGATTGTGGTGGAGGAGAAGAAAGAGGAGGAAAAGGTAGTGATG
GTGGTTCAAGAAGAGGGTCGCTGCCTACAGTAGGCTCGCATGAACGCAGC
GACAGCGGCAGCGACAGCAACAGCAACAGCAACTGTGGTAGCCATAGCGG
TGGGGCCGGGCCAGCGATGGAGACATCTCTGCCTCTACCCTCTATCTTCC
AGTCCTCGTCCCTCCTTCCCCCACCTCCCGCCCTCCATCGTCACCCCTAC
CACCACCACCACCACCACACTAGCAGCAGCAACAGCAACCACCACCATCC
CTCCTGCCCCTCCTCCTCTCCCTCCTCTTCTTCCTCCTCCTCCTCCTCTT
CTGTACCTTCCATGAAGGGCCCCCATCTTCCTTTTTTGCTGACCTCTCTC
TCCCGCGCCCTGGCCAGCACTTCCCTCTCGCCCCCCTCTCCTTCCCTCTT
ACTCCCCTCCTCCTCTTCGCCCTCCGCCTGCCAGGCGGTTCTCTCCTCTT
GTGATCTCTTGCACATGATCCTATCTTTCTTCCTCCTGCCGGGGGAGGAA
GGGAAGGAGGGCGATGCCAAGGAAGGGCGCCAAACGCTCAACACGCTCTC
CCTTGTCAATAAGAAGTTCAAAGCCCTGTCATCCTGGGATAAATACTGGA
GGCCGGTGGCGACGGGTTTGCTGCCAGTATTGGGGGTACCACGCCGGCAG
CAGCGAGGGAAGGAGGGAAGGGGGGAGGGAGGAAGGGAGGGGGGAGGGAG
GAGGAGCAGGGGGAGTACCGGGCCTACTTGGTGA
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Synonyms
Publications