NO21G01880, NO21G01880 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G01880 vs. NCBI_GenBank
Match: EWM22689.1 (Riboflavin synthase-like beta-barrel [Nannochloropsis gaditana]) HSP 1 Score: 405.6 bits (1041), Expect = 1.400e-109 Identity = 216/299 (72.24%), Postives = 251/299 (83.95%), Query Frame = 0
Query: 14 LILPVLLPVVIVLLSLLPRF--DAFRLPTYTSFSSSASTATRQSSSATVISPISRATLAGRQRGKALAVFSGIVEQMGTVKGVQL-KEMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQDKVARLEAGG 310
L LP LPV ++ L LL F AFRLP++ + +++S + + ++++PIS AGR+RGKALA+FSGIVEQMG V+ V++ K+MV+WSG+TGKGMELTITDA VL+DAYEGCSIAVNGVCLTVVT+T DTFTVG APE+IR TNLG L AG +VNLERSLPADGRNSGHMVQGHVDETGEIL + EGDSLWVKV+ASPAILPYIVEKGYIAVDGTSLTVC+VDR EGWFTFMLIAYTQKHII+PHK VGDRVNLEVDVLAKYVE SMGAT+E+LR I+ LQ++VA LE G
Sbjct: 24 LHLPSHLPVFLLALILLGLFTTHAFRLPSHVAGGTTSSI----NRAGSLLAPISSVASAGRRRGKALALFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRANIEALQERVAVLEGRG 318
BLAST of NO21G01880 vs. NCBI_GenBank
Match: XP_008902945.1 (riboflavin synthase, alpha subunit [Phytophthora parasitica INRA-310] >ETN12025.1 riboflavin synthase, alpha subunit [Phytophthora parasitica INRA-310]) HSP 1 Score: 260.4 bits (664), Expect = 7.300e-66 Identity = 132/211 (62.56%), Postives = 156/211 (73.93%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQLK-EMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLE 290
+F+GI+E++GTV +Q + +++LW+G+ G G EL + L AY GCSIAVNG CLT + D GVAPE++RRTNLG L AG KVN+ERS+ D RNSGH VQGHVD TG ILS T E DSLWVK+ A+P IL IV KGYIA+DGTSLTVCEVDRT GWF+ MLI+YTQ HII+P K VGDRVNLE DVL KY RSMG LE
Sbjct: 1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISYTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLE 210
BLAST of NO21G01880 vs. NCBI_GenBank
Match: ETK90967.1 (riboflavin synthase, alpha subunit [Phytophthora parasitica] >KUF70772.1 Riboflavin synthase [Phytophthora nicotianae] >KUF86379.1 hypothetical protein AM588_10002241 [Phytophthora nicotianae]) HSP 1 Score: 258.5 bits (659), Expect = 2.800e-65 Identity = 131/211 (62.09%), Postives = 156/211 (73.93%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQLK-EMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLE 290
+F+GI+E++GTV +Q + +++LW+G+ G G EL + L AY GCSIAVNG CLT + D GVAPE++RRTNLG L AG KVN+ERS+ D RNSGH VQGHVD TG ILS T E DSLWVK+ A+P IL IV KGYIA+DGTSLTVCEVDRT GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY RSMG LE
Sbjct: 1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLE 210
BLAST of NO21G01880 vs. NCBI_GenBank
Match: ETL44369.1 (riboflavin synthase, alpha subunit [Phytophthora parasitica] >ETL97539.1 riboflavin synthase, alpha subunit [Phytophthora parasitica] >ETM50698.1 riboflavin synthase, alpha subunit [Phytophthora parasitica] >ETO79829.1 riboflavin synthase, alpha subunit [Phytophthora parasitica P1976] >ETP20872.1 riboflavin synthase, alpha subunit [Phytophthora parasitica CJ01A1]) HSP 1 Score: 258.5 bits (659), Expect = 2.800e-65 Identity = 131/211 (62.09%), Postives = 156/211 (73.93%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQLK-EMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLE 290
+F+GI+E++GTV +Q + +++LW+G+ G G EL + L AY GCSIAVNG CLT + D GVAPE++RRTNLG L AG KVN+ERS+ D RNSGH VQGHVD TG ILS T E DSLWVK+ A+P IL IV KGYIA+DGTSLTVCEVDRT GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY RSMG LE
Sbjct: 1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLE 210
BLAST of NO21G01880 vs. NCBI_GenBank
Match: POM61432.1 (Riboflavin synthase subunit alpha [Phytophthora palmivora var. palmivora] >POM66175.1 Riboflavin synthase subunit alpha [Phytophthora palmivora var. palmivora]) HSP 1 Score: 256.9 bits (655), Expect = 8.000e-65 Identity = 132/221 (59.73%), Postives = 159/221 (71.95%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQLK-EMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQ 300
+F+GI+E++GTV +Q + +++LW+G+ G G EL + L AY GCSIAVNG CLT + D+ GVAPE++RRTNLG L AG KVN+ERS+ D RNSGH VQGHVD TG ILS T E DSLWVK+ A+P IL IV KGYIA+DGTSLTVCEVDRT GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY RSMG E + LQ
Sbjct: 1 MFTGIIEEIGTVVSMQERHDLLLWNGEHGTGFELVVR-VTLALEGAYLGCSIAVNGTCLTATSIDKDSVAFGVAPETLRRTNLGDLKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVFERVDALESQLQ 220
BLAST of NO21G01880 vs. NCBI_GenBank
Match: ETI51074.1 (riboflavin synthase, alpha subunit [Phytophthora parasitica P1569] >ETP48783.1 riboflavin synthase, alpha subunit [Phytophthora parasitica P10297]) HSP 1 Score: 256.1 bits (653), Expect = 1.400e-64 Identity = 130/211 (61.61%), Postives = 155/211 (73.46%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQLK-EMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLE 290
+F+GI+E++GTV +Q + +++LW+G+ G G EL + L AY GCSIAVNG CLT + D GVAPE++RRTNLG L G KVN+ERS+ D RNSGH VQGHVD TG ILS T E DSLWVK+ A+P IL IV KGYIA+DGTSLTVCEVDRT GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY RSMG LE
Sbjct: 1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKDGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLE 210
BLAST of NO21G01880 vs. NCBI_GenBank
Match: CBN76150.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 255.0 bits (650), Expect = 3.000e-64 Identity = 147/271 (54.24%), Postives = 184/271 (67.90%), Query Frame = 0
Query: 25 VLLSLLPRFDAFRLPTYTSFSSSASTATRQSSSATVISPISRA---TLAGRQRGKALAVFSGIVEQMGTVKGVQLKEMV-LWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEAL 292
V++SL+P F +PT + + ++ + P SR T AGR R A+FSGIVE+MG+V + + V LW G G G+ELT+ A TVL A EGCSIAVNGVCLTV +F D F VG+APE++RR+NL L AG VNLER+LP DGRNSGH VQGHVD G ILS + DSL VKV+ ++ YI KG+IAVDGTSLTVCEV+ E WFTFML+AYTQ+H++IP K GD+VNLEVDVL KY+ERS+ + L+ L
Sbjct: 10 VIVSLVPG-ACFLVPTNSRAALHSAGRRQLGQGYRDQQPSSRQPRNTAAGR-REVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTV-KANTVLEGATEGCSIAVNGVCLTVTSFNDDEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPKKSKGDKVNLEVDVLGKYIERSLSSVLDRL 277
BLAST of NO21G01880 vs. NCBI_GenBank
Match: XP_005824180.1 (hypothetical protein GUITHDRAFT_158612 [Guillardia theta CCMP2712] >EKX37200.1 hypothetical protein GUITHDRAFT_158612 [Guillardia theta CCMP2712]) HSP 1 Score: 254.6 bits (649), Expect = 4.000e-64 Identity = 133/229 (58.08%), Postives = 164/229 (71.62%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQ--LKEMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQDKVARLE 307
+F+GIVE+MG +K V+ K W G G GM L + G VL YEGCSIAVNGVCLTV F ++FTVGVAPE+IR+TNLG L G VNLER+ DGRNSGHMVQGHVD GEI+ K + +SL++KVKA ++ YIV KG+IA+DGTSLTVCE D GWFTFMLI YTQ+H+IIP K +GD+VNLEVDV++KYVERS+G + D+++RLE
Sbjct: 1 MFTGIVEEMGAIKEVKNGFKGWGEWEGSDG-GMTLRV-GGGKVLEGCYEGCSIAVNGVCLTVTEFDSESFTVGVAPETIRKTNLGLLGQGSPVNLERAAAMDGRNSGHMVQGHVDNVGEIIEKWQDKESLFIKVKAPRELMQYIVPKGFIAIDGTSLTVCETDVANGWFTFMLIDYTQQHVIIPKKPIGDKVNLEVDVISKYVERSLG-----------NINDRLSRLE 216
BLAST of NO21G01880 vs. NCBI_GenBank
Match: XP_005773989.1 (hypothetical protein EMIHUDRAFT_430591 [Emiliania huxleyi CCMP1516] >EOD21560.1 hypothetical protein EMIHUDRAFT_430591 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 251.9 bits (642), Expect = 2.600e-63 Identity = 136/245 (55.51%), Postives = 177/245 (72.24%), Query Frame = 0
Query: 70 AGRQRGKA-LAVFSGIVEQMGTVKGV-QLKEMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNL-----GALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQDKVARLEA 308
A R+ G A + VFSGIVE++G V+ + Q ++ LW G G+G+EL + A TVL AY GCSIAVNGVCLTV F D+F VG+APE++RRTNL A + G +NLER+L ADGRNSGH+VQGHVD+ G I + +G++L V+V+ ++LPYIV KG+I VDGTSLTVCEV++ EGWF FML+++TQ HI +P K VGD VNLEVDV AKYVERS+G L + L+ +VA+L+A
Sbjct: 31 ASRRAGAAPVCVFSGIVEEIGEVRRLEQRDDLPLWDGGVGEGVELEV-GASTVLEGAYLGCSIAVNGVCLTVTKFDADSFCVGLAPETLRRTNLQARRPRAAAPGAALNLERALAADGRNSGHLVQGHVDDVGTIEAMVPDGEALTVRVRPPKSLLPYIVPKGFICVDGTSLTVCEVNQAEGWFDFMLVSFTQAHITLPRKAVGDAVNLEVDVTAKYVERSVG----GLAQRVAELEAEVAQLKA 270
BLAST of NO21G01880 vs. NCBI_GenBank
Match: XP_002897805.1 (riboflavin synthase subunit alpha, putative [Phytophthora infestans T30-4] >EEY64605.1 riboflavin synthase subunit alpha, putative [Phytophthora infestans T30-4]) HSP 1 Score: 249.6 bits (636), Expect = 1.300e-62 Identity = 128/221 (57.92%), Postives = 158/221 (71.49%), Query Frame = 0
Query: 80 VFSGIVEQMGTVKGVQLK-EMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQ 300
+FSGI+E++GTV +Q + ++++W+G+ G G EL + L AY GCSIAVNG CLT + D GVAPE++RRTNLG L AG +VN+ERS+ D RNSGH VQGHVD TG ILS T E DSLWVK+ A+P IL IV KGYIA+DGTSLTVC+V+R GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY RSMG+ E + LQ
Sbjct: 1 MFSGIIEEIGTVVSMQERNDLLVWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDRVNVERSMGVDSRNSGHFVQGHVDGTGAILSFTREDDSLWVKISATPEILRDIVPKGYIAIDGTSLTVCDVNRDNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGSVHERVDALESQLQ 220 The following BLAST results are available for this feature:
BLAST of NO21G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G01880 ID=NO21G01880|Name=NO21G01880|organism=Nannochloropsis oceanica|type=gene|length=2281bpback to top protein sequence of NO21G01880.1 >NO21G01880.1-protein ID=NO21G01880.1-protein|Name=NO21G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bpback to top Synonyms
Publications
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