NO21G01880.1, NO21G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01880.1
Unique NameNO21G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr21:560329..562609 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:560329..562609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01880.1 vs.
Match: EWM22689.1 (Riboflavin synthase-like beta-barrel [Nannochloropsis gaditana])

HSP 1 Score: 405.6 bits (1041), Expect = 1.400e-109
Identity = 216/299 (72.24%), Postives = 251/299 (83.95%), Query Frame = 0 
Query:   14 LILPVLLPVVIVLLSLLPRFD--AFRLPTYTSFSSSASTATRQSSSATVISPISRATLAGRQRGKALAVFSGIVEQMGTVKGVQL-KEMVLWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVGVAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSKTVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFMLIAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQDKVARLEAGG 310
            L LP  LPV ++ L LL  F   AFRLP++ +  +++S     + + ++++PIS    AGR+RGKALA+FSGIVEQMG V+ V++ K+MV+WSG+TGKGMELTITDA  VL+DAYEGCSIAVNGVCLTVVT+T DTFTVG APE+IR TNLG L AG +VNLERSLPADGRNSGHMVQGHVDETGEIL +  EGDSLWVKV+ASPAILPYIVEKGYIAVDGTSLTVC+VDR EGWFTFMLIAYTQKHII+PHK VGDRVNLEVDVLAKYVE SMGAT+E+LR  I+ LQ++VA LE  G
Sbjct:   24 LHLPSHLPVFLLALILLGLFTTHAFRLPSHVAGGTTSSI----NRAGSLLAPISSVASAGRRRGKALALFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRANIEALQERVAVLEGRG 318
The following BLAST results are available for this feature:
BLAST of NO21G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900Expect = 1.40e-109 / Id = 72.24SequenceEWM22689.1
Match NameE-valueIdentityDescription
EWM22689.11.400e-10972.24Riboflavin synthase-like beta-barrel [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01880NO21G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01880.1NO21G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01880.1.cds1NO21G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01880.1.cds2NO21G01880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01880.1.cds3NO21G01880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01880.1.cds4NO21G01880.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01880.1.cds5NO21G01880.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01880.1.cds6NO21G01880.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01880.1.cds7NO21G01880.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01880.1 ID=NO21G01880.1|Name=NO21G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
ATGCCGGAACGCAGACCTCCCCGATGTCGCCTCCCCCTCCTCATTCTGCC
CGTCCTCCTCCCCGTCGTCATTGTCCTACTCAGCCTTTTACCCAGATTCG
ACGCTTTCCGCTTGCCTACATACACTTCCTTTTCCTCCAGTGCCAGTACT
GCCACGCGCCAATCCTCTTCCGCCACTGTCATCAGTCCCATCTCTCGAGC
CACCTTGGCAGGACGACAGAGAGGGAAGGCCCTGGCCGTCTTCTCGGGCA
TTGTCGAGCAAATGGGGACTGTGAAAGGTGTGCAGCTCAAGGAAATGGTA
CTTTGGAGTGGGGATACGGGAAAAGGCATGGAACTGACCATCACAGATGC
AGGAACTGTTCTATCCGACGCCTATGAGGGCTGCAGCATCGCAGTCAATG
GCGTTTGTCTCACCGTCGTCACCTTTACACCGGACACCTTCACAGTAGGC
GTTGCGCCCGAGTCCATCCGCCGGACCAATCTCGGGGCACTGTCAGCGGG
CCACAAGGTCAACCTGGAACGGAGCCTGCCGGCCGACGGCCGGAATTCAG
GACACATGGTGCAAGGGCACGTGGACGAGACCGGGGAAATACTCAGCAAA
ACCGTGGAGGGCGACTCGCTTTGGGTCAAGGTCAAAGCCTCGCCCGCGAT
CTTGCCGTACATCGTGGAGAAAGGGTACATCGCGGTGGACGGGACAAGTC
TGACGGTCTGTGAGGTGGATCGGACAGAGGGCTGGTTCACGTTCATGCTC
ATCGCCTACACCCAGAAGCACATCATTATTCCGCATAAGGGCGTAGGAGA
CAGGGTAAACCTGGAGGTAGATGTGCTCGCTAAGTACGTGGAACGGTCCA
TGGGCGCCACCCTGGAGGCCTTGCGGGTGGAGATCAAGATGTTGCAAGAC
AAGGTGGCTAGGCTGGAAGCGGGGGGAGGGTCATCGTAG
back to top

protein sequence of NO21G01880.1

>NO21G01880.1-protein ID=NO21G01880.1-protein|Name=NO21G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPERRPPRCRLPLLILPVLLPVVIVLLSLLPRFDAFRLPTYTSFSSSAST
ATRQSSSATVISPISRATLAGRQRGKALAVFSGIVEQMGTVKGVQLKEMV
LWSGDTGKGMELTITDAGTVLSDAYEGCSIAVNGVCLTVVTFTPDTFTVG
VAPESIRRTNLGALSAGHKVNLERSLPADGRNSGHMVQGHVDETGEILSK
TVEGDSLWVKVKASPAILPYIVEKGYIAVDGTSLTVCEVDRTEGWFTFML
IAYTQKHIIIPHKGVGDRVNLEVDVLAKYVERSMGATLEALRVEIKMLQD
KVARLEAGGGSS*
back to top

mRNA from alignment at chr21:560329..562609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01880.1 ID=NO21G01880.1|Name=NO21G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2281bp|location=Sequence derived from alignment at chr21:560329..562609- (Nannochloropsis oceanica)
ATGCCGGAACGCAGACCTCCCCGATGTCGCCTCCCCCTCCTCATTCTGCC
CGTCCTCCTCCCCGTCGTCATTGTCCTACTCAGCCTTTTACCCAGATTCG
ACGCTTTCCGCTTGCCTACATACACTTCCTTTTCCTCCAGTGCCAGTACT
GCCACGCGCCAATCCTCTTCCGCCACTGTCATCAGTCCCATCTCTCGAGC
CACCTTGGCAGGACGACAGAGAGGGAAGGCCCTGGCCGTCTTCTCGGGCA
TTGTCGAGCAAATGGGGACTGTGAAAGGTGTGCAGCTCAAGGAAATGGTA
CTTTGGAGTGGGGATACGGGAAAAGGTGTGTGGGATGCTGCAGAGAGGGT
TGTGTTTGGGGGTGGGTGGGGTGGGTAGGGAGGAGAGGGTAGGAGGTCGT
TTTGATGGGGAGGTAGGAAGGAGACGAGGCTAACAATAAGTTCCTGATGA
CATGCAAGTGCTTTGTGTGTGTGGGAGGAGCTGCTCGATCGAATTATTTC
TCTGCACGCAACCCCCCCGTCTTCTTTCCTCGCACCACCTACCCAAGCAT
TCCTTCCCTTCCATCACTGCCACACAACACAGGCATGGAACTGACCATCA
CAGATGCAGGAACTGTTCTATCCGACGCCTATGAGGGCTGCAGCATCGCA
GTCAATGGCGTTTGTCTCACCGTCGTCACCTTTACACGTACGTCCTTCCT
CTTTTTCCCTCCTCATATCATTTTATCCTAATCCCCTTCACTCCTTTATC
GACTTTTTTTTTTTTTTTTTTTTTCATTCTATTGGATTCCTTTTCTTTCG
TTTCTTTTTCCATCCATAGGAATCATCTATCCGCCACCCTGAAATTTCCT
CCGCTCTTCCCTTGCATATAGCGGACACCTTCACAGTAGGCGTTGCGCCC
GAGTCCATCCGCCGGACCAATCTCGGGGCACTGTCAGCGGGCCACAAGGT
CAACCTGGAACGGTAAATAATCTTAAGAATATTAAAATTCAAAAGAGGAC
ATGCTCACCAAAACCTCGTTCCCTCCCGCCCTCCTTTCCTTTCCCTGGTA
GGAGCCTGCCGGCCGACGGCCGGAATTCAGGACACATGGTGCAAGGGCAC
GTGGACGAGACCGGGGAAATACTCAGCAAAACCGTGGAGGGCGACTCGCT
TTGGGTCAAGGTCAAAGCCTCGCCCGCGATCTTGCCGTACATCGTGGAGA
AAGGGTAAGGAAGGCAAAAGGGAGTCGGAAGGAGGGGAAGCAAGAGTGTG
GGGGATGCATGGCTTTGATCCCCGTGTCGGGAGCGTGATGGCATTTGCAC
GAGGTTTGAGAATGATGAGCCCTGGCTGGTTTACTTCATTCGTTCTGATT
AATTGACTTCCCTTCCTTCCAATTTCGACAGGTACATCGCGGTGGACGGG
ACAAGTCTGACGGTCTGTGAGGTGGATCGGACAGAGGGCTGGTTCACGTT
CATGCTCATCGCCTACACCCAGAAGCACATCATTATTCCGCATAAGGGCG
TAGGAGACAGGTAGGTTGAGTCTTTCCACAACCCCCATCGATCTCGAAGT
TCGCTTGCTTCTCATTTAAGCTATATTATCTTCTAGCTTTCATATTTTTC
TAAATCAACGCGTCGGTGGCTTTTTGAGCTTTTCCCCCCTATTTCCTTAT
GCTGCGTGCCGTGACACACGAAAAGTGACACAAATTATAATCCATTAAAA
TAGGGTAAACCTGGAGGTAGATGTGCTCGCTAAGTACGTGGAACGGTCCA
TGGGCGCCACCCTGGAGGCCTTGCGGGTGGAGATCAAGATGTTGCAAGAC
AAGGTGTGTTGGTGGGGATGGGGGGCAGGTGTGAGAGACTTGATAATGAT
AATTCAAAGGAGCCATGGCCAGCCAACAGCGACTGGCCGCTGGCGTATTT
CATGGCATTCTAGAGATGCCATCGTTGTGTTGATGCGAAGGTTGGAGAAA
CGGGTCCAGAATGAAAATTTTGAGGCGTGACATGGAACAATTTGTTCGTT
TTTAACGAGTAACTTTCCTAGACTCGGAGTAAGGGGCCTCATCTCAGGCT
GTGGCTTATTCTGTATATCACTTCAGTACTTCACCCACCTCATGTGTAAT
TCAAGCACGCTTATCATAAGTTATCTCTGGTTTTGTACCTGGTCACAACA
CAACTCATCTTCGTCCTCACACTCACAGTCTCATTCGATCCATCCAATAT
CACTTTCCCCCATTTACATCTCAAACTTTCTCTTTCGCCCTCAAGGTGGC
TAGGCTGGAAGCGGGGGGAGGGTCATCGTAG
back to top

Coding sequence (CDS) from alignment at chr21:560329..562609-

>NO21G01880.1 ID=NO21G01880.1|Name=NO21G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr21:560329..562609- (Nannochloropsis oceanica)
ATGCCGGAACGCAGACCTCCCCGATGTCGCCTCCCCCTCCTCATTCTGCC
CGTCCTCCTCCCCGTCGTCATTGTCCTACTCAGCCTTTTACCCAGATTCG
ACGCTTTCCGCTTGCCTACATACACTTCCTTTTCCTCCAGTGCCAGTACT
GCCACGCGCCAATCCTCTTCCGCCACTGTCATCAGTCCCATCTCTCGAGC
CACCTTGGCAGGACGACAGAGAGGGAAGGCCCTGGCCGTCTTCTCGGGCA
TTGTCGAGCAAATGGGGACTGTGAAAGGTGTGCAGCTCAAGGAAATGGTA
CTTTGGAGTGGGGATACGGGAAAAGGCATGGAACTGACCATCACAGATGC
AGGAACTGTTCTATCCGACGCCTATGAGGGCTGCAGCATCGCAGTCAATG
GCGTTTGTCTCACCGTCGTCACCTTTACACCGGACACCTTCACAGTAGGC
GTTGCGCCCGAGTCCATCCGCCGGACCAATCTCGGGGCACTGTCAGCGGG
CCACAAGGTCAACCTGGAACGGAGCCTGCCGGCCGACGGCCGGAATTCAG
GACACATGGTGCAAGGGCACGTGGACGAGACCGGGGAAATACTCAGCAAA
ACCGTGGAGGGCGACTCGCTTTGGGTCAAGGTCAAAGCCTCGCCCGCGAT
CTTGCCGTACATCGTGGAGAAAGGGTACATCGCGGTGGACGGGACAAGTC
TGACGGTCTGTGAGGTGGATCGGACAGAGGGCTGGTTCACGTTCATGCTC
ATCGCCTACACCCAGAAGCACATCATTATTCCGCATAAGGGCGTAGGAGA
CAGGGTAAACCTGGAGGTAGATGTGCTCGCTAAGTACGTGGAACGGTCCA
TGGGCGCCACCCTGGAGGCCTTGCGGGTGGAGATCAAGATGTTGCAAGAC
AAGGTGGCTAGGCTGGAAGCGGGGGGAGGGTCATCGTAG
back to top
Synonyms
Publications