NO21G01850, NO21G01850 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G01850 vs. NCBI_GenBank
Match: EWM22683.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 276.2 bits (705), Expect = 3.500e-70 Identity = 337/839 (40.17%), Postives = 426/839 (50.77%), Query Frame = 0
Query: 1 MQRCHGKGMHREVLRTFQELCELKQEEYAASKRDPSSSPXXXXXXXXXXXXXXXKCDKYVPISPSEVALALNAAVASNHTVAMDRAVKGFFNSFPRDPKSGRVIMAEGEEKSGEKGPKWWELIAAVMPKEGGWRAMEALYQEARRQGVLEGKDKKKEGGLRAKLLEILEEAAARSAAAGPAAVEGGRGREGGRWMGRELELSRESSIEELLLGTLSPSMAPRALWLLETIEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYHGVIYLLVRGGLVDEGLALLRRLVAQGDERPLRSSYRVLISGYCRLGRRKSALYLLQDLRQWRSKRGAXXXXXXXXXXXXXXXXVRLIEGIGRAXXXXXXXXXXEAQQQLLQPRHVKEEGEKGGERLSTSRLLRSLTDRYGLAPPLSSYSRVMKGLGEGGREDEALELLKNMRARGLKPDVWCSNYALMACARSEGKEGGRVVWEVLDEMEEEERSAFTYSLVIEGLGKAGRWEEARGVLFEMKKKGIQPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKGLEVTEIHYGAAINGLNLSEEDDELLLHLYEEARGRGVTMVVGMWAAAIKAGDRMGAYERVLKVGGEMMECGQSPNKKALKLLMLAAERGGRYEEGVGLFERVVGEGGMEPCEAANKYALVCAEKVGNTMTMLGCMKRAERMGWRGEGKGVEEWMCRLAARALNRVEIE----KECIGGWDEKERWMAVAELEAMVGLWRRRAEEE 836
MQRCH +G+H VLRTF+ELC QE K Y PI P+E+ +AL A +A H V ++RAV GF S PR+ +GR + + G WWE +AA +P+E GW+A+ LY E R++G+ G E GLR ++L+ LE +AA+ P + G E + + + APRA LE +G XXXXXXXXX D+ I L RGG+ D +LLRRL G P+ SSY + + Y R RR A ++LQ++R S++G XXXXXXX XXXXXXXXXX Q R EG + S+ SR ++ L GR EALE L+ M+ARGL P+VWC NY+LMACARS + + +L+EM ERS +++SL+I KAG W A+GVL M+ +G+ PS G GG XXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HYGA +N LNLSEEDD LL LY EA+ R + VGM AAIKAGDRMGA +RV+ VG +M+ G PN++ALKLL+ A GG Y+EGV F E + K L CAEK+G+ T+L C+K AE +EWMCR A+R +NR E E K+ G + + AVAEL+AM+ W A ++
Sbjct: 130 MQRCHSEGLHMGVLRTFKELCSSGQES--------------GIFLPQHDVPPAHKASLYGPILPAELTMALQAGMACKHWVKLERAVVGFGASLPREEGTGRCM-------TETLGANWWESVAAALPEEDGWKALYPLYLETRKRGLGTG----GEEGLRRRVLQSLE-----AAASMPVRGDEGGDSESDTRLVELISSAXXXXXXXXXXXXXXXXXAPRAWLELERALQG-----------------EARXXXXXXXXXRKPSPADFDQAITRLARGGMADHANSLLRRLTLLGG-LPMASSYAAVATAYARQVRRAGARHVLQEMR-GLSEKGCLAETEVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGQERC---EGGEXXXXXXXXXXXXXXXXXXXTPQASSTESRSLRRLARAGRGPEALEALRTMQARGLVPNVWCYNYSLMACARSGLLKEAQ---GLLEEMPAAERSVYSHSLLIHAAEKAGDWRAAQGVLERMRCRGLVPSVACYGSTMNALGKAGRAEEALALLRRM----GTGGE------PRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHYGAVLNALNLSEEDDASLLALYAEAQDRRLPQHVGMHGAAIKAGDRMGASDRVISVGRDMLRDGHRPNQRALKLLVYHAYAGGAYQEGVAFFH--AREEAYVQNASIIKLVLRCAEKIGDVETVLLCIKEAE---------SKKEWMCRTASRIINREEAEEMQGKQAREGEKREIKRRAVAELKAMLKEWTYEAGKQ 892
BLAST of NO21G01850 vs. NCBI_GenBank
Match: CBN78697.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.8 bits (164), Expect = 1.900e-7 Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 0
Query: 416 LSSYSRVMKGLGEGGREDEALELLKNMRARGLKPDVWCSNYALMACARSEGKEGGRVVWEVLDEMEEEERSAFTYSLVIEGLGKAGRWEEARGVLFEMKKKGIQPS 522
L Y + GL GG+ EAL +L+ M + GLKP C A ACA++ + G + ++ +EE E +TY + LGKAG+W+ + +L EM+ +G+ P+
Sbjct: 579 LRMYEGCLVGLSSGGKWVEALSVLEKMESAGLKPSARCVTAATKACAKANPPKWG-LALSLVRGLEEPE--VWTYVAALAALGKAGQWKASTALLEEMRTEGVSPN 681
BLAST of NO21G01850 vs. NCBI_GenBank
Match: EFJ28424.1 (hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]) HSP 1 Score: 67.0 bits (162), Expect = 3.200e-7 Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 0
Query: 416 LSSYSRVMKGLGEGGREDEALELLKNMRARGLKPDVWCSNYALMACA-RSEGKEGGRVVWEVLDEMEEEERSAFTYSLVIEGLGKAGRWEEARGVLFEMKKK 517
L ++S ++ + GRE+EAL+L + M+ +G KPD + + AC+ R K+GGR +++ L + SA Y ++E LG+AG+ EEA G++ M +K
Sbjct: 793 LVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCMVEVLGRAGKLEEAEGLIQGMPRK 894 The following BLAST results are available for this feature:
BLAST of NO21G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G01850 ID=NO21G01850|Name=NO21G01850|organism=Nannochloropsis oceanica|type=gene|length=4156bpback to top protein sequence of NO21G01850.1 >NO21G01850.1-protein ID=NO21G01850.1-protein|Name=NO21G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=846bpback to top Synonyms
Publications
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