Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:551512..555667 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01850.1 vs.
Match: EWM22683.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])
HSP 1 Score: 505.0 bits (1299), Expect = 4.600e-139
Identity = 355/843 (42.11%), Postives = 465/843 (55.16%), Query Frame = 0
Query: 1 MQRCHGKGMHREVLRTFQELCELKQEEYAASKRDPSSSPSSLSSLSPLSMSSSNKCDKYVPISPSEVALALNAAVASNHTVAMDRAVKGFFNSFPRDPKSGRVIMAEGEEKSGEKGPKWWELIAAVMPKEGGWRAMEALYQEARRQGVLEGKDKKKEGGLRAKLLEILEEAAARSAAAGPAAVEGGRGREGGRWMGRELELSRESSIEELLLGTLSPSMAPRALWLLETIEEGEEEEGNGNGLSTSSSSSSSSSSSSSRRERKKPTPADYHGVIYLLVRGGLVDEGLALLRRLVAQGDERPLRSSYRVLISGYCRLGRRKSALYLLQDLRQWRSKRGAGGEDEYEEQEEEERECVRL-IEGIGRAEGEGEKEEGQEAQQQLLQPRHVKEEGEK---GGERLSTSRLLRSLTDRYGLAPPLSSYSRVMKGLGEGGREDEALELLKNMRARGLKPDVWCSNYALMACARSEGKEGGRVVWEVLDEMEEEERSAFTYSLVIEGLGKAGRWEEARGVLFEMKKKGIQPSVGCYSSAINALGKAGRAMEALELLDKMKEEEGEGGREVGVKPNAVVYTAAIDACARSGMVEEAVGLLREMEGGREGGGLPPNPVAYGCAINACAKAREGRKAVMLLREMQKKGLEVTEIHYGAAINGLNLSEEDDELLLHLYEEARGRGVTMVVGMWAAAIKAGDRMGAYERVLKVGGEMMECGQSPNKKALKLLMLAAERGGRYEEGVGLFERVVGEGGMEPCEAANKYALVCAEKVGNTMTMLGCMKRAERMGWRGEGKGVEEWMCRLAARALNRVEIE----KECIGGWDEKERWMAVAELEAMVGLWRRRAEEE 836
MQRCH +G+H VLRTF+ELC SS S L + ++K Y PI P+E+ +AL A +A H V ++RAV GF S PR+ +GR + + G WWE +AA +P+E GW+A+ LY E R++G+ G ++ GLR ++L+ LE AA+ EGG R + EL S SS+EELLL TLS S A WL +E + E G G + +KP+PAD+ I L RGG+ D +LLRRL G P+ SSY + + Y R RR A ++LQ++R S++G E E EE E R +G G G G++A+ + E G + GGERL+ + G S+ SR ++ L GR EALE L+ M+ARGL P+VWC NY+LMACARS + + +L+EM ERS +++SL+I KAG W A+GVL M+ +G+ PSV CY S +NALGKAGRA EAL LL +M G GG +PNAV YT AIDACAR + EA+GLLREME R GL PN VAY CA+NACAK R G +A+ LLREMQ KGL TE HYGA +N LNLSEEDD LL LY EA+ R + VGM AAIKAGDRMGA +RV+ VG +M+ G PN++ALKLL+ A GG Y+EGV F E + K L CAEK+G+ T+L C+K AE +EWMCR A+R +NR E E K+ G + + AVAEL+AM+ W A ++
Sbjct: 130 MQRCHSEGLHMGVLRTFKELC--------------SSGQESGIFLPQHDVPPAHKASLYGPILPAELTMALQAGMACKHWVKLERAVVGFGASLPREEGTGRCM-------TETLGANWWESVAAALPEEDGWKALYPLYLETRKRGLGTGGEE----GLRRRVLQSLEAAASMPVRGD----EGGDSESDTRLV--ELISSASSSMEELLLQTLSSSSAAPRAWL--ELERALQGEARGKGKGEGGA--------------RKPSPADFDQAITRLARGGMADHANSLLRRLTLLGG-LPMASSYAAVATAYARQVRRAGARHVLQEMRGL-SEKGCLAETEVAAAEEACAELARAGRDGAGGEGGRSAPSRGEDARGGGQERCEGGERGRREAAGGERLTVAAA-------GGTPQASSTESRSLRRLARAGRGPEALEALRTMQARGLVPNVWCYNYSLMACARSGLLKEAQ---GLLEEMPAAERSVYSHSLLIHAAEKAGDWRAAQGVLERMRCRGLVPSVACYGSTMNALGKAGRAEEALALLRRM----GTGGEP---RPNAVAYTTAIDACARRSLASEALGLLREMEEER---GLAPNAVAYACAMNACAKDRRGLEALRLLREMQAKGLAATEAHYGAVLNALNLSEEDDASLLALYAEAQDRRLPQHVGMHGAAIKAGDRMGASDRVISVGRDMLRDGHRPNQRALKLLVYHAYAGGAYQEGVAFFH--AREEAYVQNASIIKLVLRCAEKIGDVETVLLCIKEAE---------SKKEWMCRTASRIINREEAEEMQGKQAREGEKREIKRRAVAELKAMLKEWTYEAGKQ 892
The following BLAST results are available for this feature:
BLAST of NO21G01850.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 4.60e-139 / Id = 42.11 Sequence EWM22683.1
Match Name E-value Identity Description
EWM22683.1 4.600e-139 42.11 Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01850.1 ID=NO21G01850.1|Name=NO21G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=4156bp back to top protein sequence of NO21G01850.1
>NO21G01850.1-protein ID=NO21G01850.1-protein|Name=NO21G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=846bp back to top mRNA from alignment at chr21:551512..555667-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01850.1 ID=NO21G01850.1|Name=NO21G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=4156bp|location=Sequence derived from alignment at chr21:551512..555667- (Nannochloropsis oceanica)ATGCAGCGTTGTCATGGTAA
GGGAATGCATCGGGAGGTCTTACGGACATTCCAGGAATTGTGCGAGTTGA
AGCAGGAGGAGTACGCTGCTAGCAAACGAGACCCTTCCTCATCGCCATCA
TCATTATCATCATTGTCGCCATTGAGCATGAGTAGTAGTAATAAGTGTGA
CAAATACGTCCCGATTTCACCAAGCGAGGTGGCGCTGGCCTTAAACGCGG
CCGTGGCGTCCAATCACACGGTGGCCATGGATAGGGCAGTCAAGGGATTT
TTCAATTCATTCCCACGCGATCCCAAGAGTGGAAGAGTGATCATGGCAGA
GGGCGAAGAAAAGTCGGGCGAGAAAGGCCCGAAATGGTGGGAGTTGATTG
CAGCAGTGATGCCGAAGGAAGGCGGCTGGAGGGCCATGGAGGCTCTTTAT
CAAGAGGCAAGACGACAGGGGGTGCTTGAGGGGAAGGATAAAAAGAAGGA
AGGGGGATTGAGAGCCAAATTGTTGGAGATATTGGAAGAGGCGGCTGCCA
GGTCAGCGGCAGCAGGACCAGCAGCTGTGGAAGGAGGGCGAGGGAGGGAG
GGAGGTAGGTGGATGGGGAGGGAGTTGGAACTGTCGCGGGAAAGCAGTAT
AGAAGAGTTGCTGCTGGGGACCTTGTCGCCTTCTATGGCACCACGGGCAC
TGTGGCTGCTGGAGACAATTGAGGAGGGAGAGGAGGAGGAAGGGAATGGG
AATGGCCTTAGCACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGAAGAGAGAGAAAGAAACCGACTCCCGCAGATTACCATGGAGTCA
TTTATTTATTGGTGCGGGGGGGATTGGTCGACGAGGGGCTTGCCCTGCTT
CGGCGTCTGGTAGCCCAGGGGGATGAGAGGCCCTTGCGCTCATCTTATCG
AGTCCTTATATCCGGGTACTGTCGGCTGGGACGGAGGAAGAGTGCTCTGT
ACCTCCTGCAGGACCTGAGACAGTGGAGGAGTAAAAGAGGGGCAGGAGGG
GAGGATGAGTATGAGGAGCAAGAGGAGGAAGAGAGGGAGTGCGTCAGGTT
GATTGAGGGAATTGGGCGGGCAGAAGGGGAGGGGGAGAAGGAGGAAGGAC
AGGAGGCCCAGCAGCAGCTGTTGCAGCCACGCCACGTGAAGGAGGAGGGG
GAGAAAGGGGGGGAGAGGCTGTCGACCTCACGACTGCTGCGGTCCTTGAC
GGATAGATATGGCCTGGCTCCTCCTTTATCGTCGTATAGCCGGGTGATGA
AGGGCCTGGGGGAGGGCGGGAGGGAGGACGAGGCGTTGGAGTTGTTAAAG
AACATGAGGGCCCGAGGCCTTAAGCCGGACGTGTGGTGCAGTAACTACGC
TCTCATGGCATGCGCGAGGAGTGAGGGGAAGGAGGGAGGGAGGGTCGTCT
GGGAGGTGTTGGATGAGATGGAGGAGGAGGAGAGGAGTGCCTTTACCTAT
TCCTTGGTCATCGAGGGATTGGGAAAGGCGGGGCGGTGGGAGGAGGCCAG
GGGGGTTTTGTTTGAGATGAAGAAAAAGGGGATTCAGCCTTCTGTGGGGT
GTTACAGCTCGGCTATAAACGCATTGGGGAAGGCAGGGAGGGCGATGGAG
GCCTTGGAATTGCTGGACAAGATGAAGGAGGAGGAGGGGGAGGGAGGGAG
GGAGGTAGGGGTGAAACCCAATGCGGTGGTGTACACTGCGGCGATCGATG
CGTGTGCAAGGAGTGGAATGGTAGAGGAGGCGGTGGGCCTGTTGAGAGAG
ATGGAGGGAGGGAGGGAGGGAGGGGGCCTGCCTCCGAACCCTGTGGCGTA
TGGATGCGCGATCAATGCTTGCGCAAAGGCCAGGGAGGGACGGAAGGCGG
TTATGCTGTTGAGGGAGATGCAGAAGAAGGGCTTGGAAGTGACGGAGATT
CACTACGGCGCCGCTATCAACGGCCTAAACCTAAGCGAGGAGGACGATGA
ACTTTTGTTGCATCTTTACGAGGAGGCGAGAGGGAGGGGGGTGACGATGG
TGGTGGGCATGTGGGCGGCTGCTATCAAAGCAGGGGATCGGATGGGGGCC
TATGAAAGAGTACTGAAGGTGGGAGGAGAGATGATGGAGTGTGGACAGAG
TCCGAACAAGAAGGCCTTGAAATTGTTGATGCTAGCGGCGGAGAGGGGTG
GGAGGTATGAGGAGGGGGTGGGACTGTTTGAGAGGGTCGTGGGAGAAGGA
GGGATGGAGCCGTGTGAGGCGGCGAATAAGTATGCCTTGGTGTGTGCAGA
GAAGGTGGGGAATACGATGACGATGTTGGGATGCATGAAGAGGGCTGAGA
GGATGGGTTGGAGAGGAGAGGGGAAGGGGGTGGAAGAGTGGATGTGCCGC
TTGGCGGCACGGGCGTTAAATCGGGTGGAAATAGAGAAGGAGTGCATAGG
AGGGTGGGATGAAAAGGAGAGGTGGATGGCAGTAGCGGAATTGGAGGCGA
TGGTGGGGTTGTGGAGGAGGAGAGCGGAAGAGGAGACCTGGCGGAAGAAA
AACGGGGGAGGGGTGTGA back to top Coding sequence (CDS) from alignment at chr21:551512..555667-
>NO21G01850.1 ID=NO21G01850.1|Name=NO21G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at chr21:551512..555667- (Nannochloropsis oceanica) back to top