NO21G01800, NO21G01800 (gene) Nannochloropsis oceanica

Overview
NameNO21G01800
Unique NameNO21G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length932
Alignment locationchr21:534434..535365 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:534434..535365 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01800 vs. NCBI_GenBank
Match: EWM22684.1 (hypothetical protein Naga_100218g9 [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 1.200e-45
Identity = 95/197 (48.22%), Postives = 138/197 (70.05%), Query Frame = 0 
Query:    1 MVMSQSIDDQVRNLCRAIDHGLRDWQDARTSSLSVLKGLANATIATSYLKDGGGSVRGGSDPHEARWRPGEENLRARLEVGLWTQRLANYQRLQTQLQRMEDAVDALRESLATLQGCSLPMREALGRSINLLYLEELLVEAVGALTDEGIMCGDLVQKSGHATTQESQVLYASAWAALPLLQEHRRQALKDLVQVVL 198
            M +SQS ++Q RN+CRAI  GLR W++ R +SL++ +GLANA IA+ YL+  G         ++ARW PGEE L  R+++ LW QRL ++ RLQ QL++M + V  LRESL T++ C  P+R+    +IN+ YL+ELL E V AL  EG +C  ++ ++G  T  +SQV+Y+SAWAA PLL +HR++ALKDL+++VL
Sbjct:   68 MAISQSEENQARNICRAIARGLRGWEETRNNSLTLFEGLANAIIASGYLRGFGKYSGETESSNDARWLPGEEGLHVRVDIKLWLQRLKDHHRLQVQLRKMNEYVSNLRESLLTVRSCPEPVRDVFKETINISYLQELLEEVVEALDAEGRLCEQILSQNGQTTAYKSQVVYSSAWAARPLLHDHRQRALKDLLELVL 264
The following BLAST results are available for this feature:
BLAST of NO21G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900Expect = 1.20e-45 / Id = 48.22SequenceEWM22684.1
Match NameE-valueIdentityDescription
EWM22684.11.200e-4548.22hypothetical protein Naga_100218g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004599NSK004599Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01800.1NO21G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602625gene_8144Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100218g9gene7758Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01800.1NO21G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01800 ID=NO21G01800|Name=NO21G01800|organism=Nannochloropsis oceanica|type=gene|length=932bp
AAAAAACATGAGACATACGCAACGCCCCCCCATAAAAATATACTCGAGGA
CAGGAACGAAATGGTGATGTCGCAATCTATAGATGATCAAGTGCGCAACC
TCTGCCGGGCCATCGACCACGGCCTGCGAGATTGGCAAGgtaagacgaga
gtctctgctttgcacccaaaggggatctcgacgttccccaagggggatct
cgacgttccccccactgcacgcacgactctccactctcctcctctcacct
tcgccccctcttatgcgcgtacacatcatagATGCGCGAACTAGCAGTTT
GAGCGTGCTCAAGGGACTGGCCAACGCCACGATTGCCACCAGCTACCTTA
AAGATGGCGGGGGTAGTGTCAGGGGCGGAAGCGATCCACACGAGGCCCGT
TGGCGACCAGGAGAGGAAAACCTACGTGCTCGACTGGAAGTGGGCCTCTG
GACGCAGCGATTGGCCAATTATCAGCGGCTCCAAACCCAGCTCCAGCGAA
TGGAGGATGCCGTGGATGCACTACGGGAGTCGCTCGCTACCCTGCAAGGG
TGCTCGTTGCCGATGCGCGAGGCCTTGGGTCGGAGCATCAATCTACTGTA
TTTGGAGGAACTGCTGGTCGAAGCTGTGGGCGCCTTAACAGATGAAGGAA
TTATGTGTGGAGATCTAGTGCAGAAGTCAGGCCATGCGACAACACAGGAG
TCTCAGGTCTTGTATGCCTCGGCCTGGGCGGCCCTGCCGCTGCTGCAGGA
ACACCGACGGCAGGCATTGAAAGACCTGGTACAGGTGGTGCTATCAGGAG
GAGAGGCTTGAGTATGGAAAATAGATCAAAAAAGGAGACAGACGGAAATT
AAGAGGAGTAGAGCGGTGTGAATGTGAATCAGGGTATGTGTAAAGAACAA
TGAAAAAAAGCATCATTTCGACATGTATTCCA
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protein sequence of NO21G01800.1

>NO21G01800.1-protein ID=NO21G01800.1-protein|Name=NO21G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MVMSQSIDDQVRNLCRAIDHGLRDWQDARTSSLSVLKGLANATIATSYLK
DGGGSVRGGSDPHEARWRPGEENLRARLEVGLWTQRLANYQRLQTQLQRM
EDAVDALRESLATLQGCSLPMREALGRSINLLYLEELLVEAVGALTDEGI
MCGDLVQKSGHATTQESQVLYASAWAALPLLQEHRRQALKDLVQVVLSGG
EA*
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Synonyms
Publications