NO21G01800.1, NO21G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01800.1
Unique NameNO21G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length790
Alignment locationchr21:534434..535365 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:534434..535365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01800.1 vs.
Match: EWM22684.1 (hypothetical protein Naga_100218g9 [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 1.200e-45
Identity = 95/197 (48.22%), Postives = 138/197 (70.05%), Query Frame = 0 
Query:    1 MVMSQSIDDQVRNLCRAIDHGLRDWQDARTSSLSVLKGLANATIATSYLKDGGGSVRGGSDPHEARWRPGEENLRARLEVGLWTQRLANYQRLQTQLQRMEDAVDALRESLATLQGCSLPMREALGRSINLLYLEELLVEAVGALTDEGIMCGDLVQKSGHATTQESQVLYASAWAALPLLQEHRRQALKDLVQVVL 198
            M +SQS ++Q RN+CRAI  GLR W++ R +SL++ +GLANA IA+ YL+  G         ++ARW PGEE L  R+++ LW QRL ++ RLQ QL++M + V  LRESL T++ C  P+R+    +IN+ YL+ELL E V AL  EG +C  ++ ++G  T  +SQV+Y+SAWAA PLL +HR++ALKDL+++VL
Sbjct:   68 MAISQSEENQARNICRAIARGLRGWEETRNNSLTLFEGLANAIIASGYLRGFGKYSGETESSNDARWLPGEEGLHVRVDIKLWLQRLKDHHRLQVQLRKMNEYVSNLRESLLTVRSCPEPVRDVFKETINISYLQELLEEVVEALDAEGRLCEQILSQNGQTTAYKSQVVYSSAWAARPLLHDHRQRALKDLLELVL 264
The following BLAST results are available for this feature:
BLAST of NO21G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700Expect = 1.20e-45 / Id = 48.22SequenceEWM22684.1
Match NameE-valueIdentityDescription
EWM22684.11.200e-4548.22hypothetical protein Naga_100218g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01800NO21G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01800.1NO21G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01800.1.cds1NO21G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01800.1.cds2NO21G01800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01800.1 ID=NO21G01800.1|Name=NO21G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
AAAAAACATGAGACATACGCAACGCCCCCCCATAAAAATATACTCGAGGA
CAGGAACGAAATGGTGATGTCGCAATCTATAGATGATCAAGTGCGCAACC
TCTGCCGGGCCATCGACCACGGCCTGCGAGATTGGCAAGATGCGCGAACT
AGCAGTTTGAGCGTGCTCAAGGGACTGGCCAACGCCACGATTGCCACCAG
CTACCTTAAAGATGGCGGGGGTAGTGTCAGGGGCGGAAGCGATCCACACG
AGGCCCGTTGGCGACCAGGAGAGGAAAACCTACGTGCTCGACTGGAAGTG
GGCCTCTGGACGCAGCGATTGGCCAATTATCAGCGGCTCCAAACCCAGCT
CCAGCGAATGGAGGATGCCGTGGATGCACTACGGGAGTCGCTCGCTACCC
TGCAAGGGTGCTCGTTGCCGATGCGCGAGGCCTTGGGTCGGAGCATCAAT
CTACTGTATTTGGAGGAACTGCTGGTCGAAGCTGTGGGCGCCTTAACAGA
TGAAGGAATTATGTGTGGAGATCTAGTGCAGAAGTCAGGCCATGCGACAA
CACAGGAGTCTCAGGTCTTGTATGCCTCGGCCTGGGCGGCCCTGCCGCTG
CTGCAGGAACACCGACGGCAGGCATTGAAAGACCTGGTACAGGTGGTGCT
ATCAGGAGGAGAGGCTTGAGTATGGAAAATAGATCAAAAAAGGAGACAGA
CGGAAATTAAGAGGAGTAGAGCGGTGTGAATGTGAATCAGGGTATGTGTA
AAGAACAATGAAAAAAAGCATCATTTCGACATGTATTCCA
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protein sequence of NO21G01800.1

>NO21G01800.1-protein ID=NO21G01800.1-protein|Name=NO21G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MVMSQSIDDQVRNLCRAIDHGLRDWQDARTSSLSVLKGLANATIATSYLK
DGGGSVRGGSDPHEARWRPGEENLRARLEVGLWTQRLANYQRLQTQLQRM
EDAVDALRESLATLQGCSLPMREALGRSINLLYLEELLVEAVGALTDEGI
MCGDLVQKSGHATTQESQVLYASAWAALPLLQEHRRQALKDLVQVVLSGG
EA*
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mRNA from alignment at chr21:534434..535365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01800.1 ID=NO21G01800.1|Name=NO21G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=932bp|location=Sequence derived from alignment at chr21:534434..535365- (Nannochloropsis oceanica)
AAAAAACATGAGACATACGCAACGCCCCCCCATAAAAATATACTCGAGGA
CAGGAACGAAATGGTGATGTCGCAATCTATAGATGATCAAGTGCGCAACC
TCTGCCGGGCCATCGACCACGGCCTGCGAGATTGGCAAGGTAAGACGAGA
GTCTCTGCTTTGCACCCAAAGGGGATCTCGACGTTCCCCAAGGGGGATCT
CGACGTTCCCCCCACTGCACGCACGACTCTCCACTCTCCTCCTCTCACCT
TCGCCCCCTCTTATGCGCGTACACATCATAGATGCGCGAACTAGCAGTTT
GAGCGTGCTCAAGGGACTGGCCAACGCCACGATTGCCACCAGCTACCTTA
AAGATGGCGGGGGTAGTGTCAGGGGCGGAAGCGATCCACACGAGGCCCGT
TGGCGACCAGGAGAGGAAAACCTACGTGCTCGACTGGAAGTGGGCCTCTG
GACGCAGCGATTGGCCAATTATCAGCGGCTCCAAACCCAGCTCCAGCGAA
TGGAGGATGCCGTGGATGCACTACGGGAGTCGCTCGCTACCCTGCAAGGG
TGCTCGTTGCCGATGCGCGAGGCCTTGGGTCGGAGCATCAATCTACTGTA
TTTGGAGGAACTGCTGGTCGAAGCTGTGGGCGCCTTAACAGATGAAGGAA
TTATGTGTGGAGATCTAGTGCAGAAGTCAGGCCATGCGACAACACAGGAG
TCTCAGGTCTTGTATGCCTCGGCCTGGGCGGCCCTGCCGCTGCTGCAGGA
ACACCGACGGCAGGCATTGAAAGACCTGGTACAGGTGGTGCTATCAGGAG
GAGAGGCTTGAGTATGGAAAATAGATCAAAAAAGGAGACAGACGGAAATT
AAGAGGAGTAGAGCGGTGTGAATGTGAATCAGGGTATGTGTAAAGAACAA
TGAAAAAAAGCATCATTTCGACATGTATTCCA
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Coding sequence (CDS) from alignment at chr21:534434..535365-

>NO21G01800.1 ID=NO21G01800.1|Name=NO21G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr21:534434..535365- (Nannochloropsis oceanica)
ATGGTGATGTCGCAATCTATAGATGATCAAGTGCGCAACCTCTGCCGGGC
CATCGACCACGGCCTGCGAGATTGGCAAGATGCGCGAACTAGCAGTTTGA
GCGTGCTCAAGGGACTGGCCAACGCCACGATTGCCACCAGCTACCTTAAA
GATGGCGGGGGTAGTGTCAGGGGCGGAAGCGATCCACACGAGGCCCGTTG
GCGACCAGGAGAGGAAAACCTACGTGCTCGACTGGAAGTGGGCCTCTGGA
CGCAGCGATTGGCCAATTATCAGCGGCTCCAAACCCAGCTCCAGCGAATG
GAGGATGCCGTGGATGCACTACGGGAGTCGCTCGCTACCCTGCAAGGGTG
CTCGTTGCCGATGCGCGAGGCCTTGGGTCGGAGCATCAATCTACTGTATT
TGGAGGAACTGCTGGTCGAAGCTGTGGGCGCCTTAACAGATGAAGGAATT
ATGTGTGGAGATCTAGTGCAGAAGTCAGGCCATGCGACAACACAGGAGTC
TCAGGTCTTGTATGCCTCGGCCTGGGCGGCCCTGCCGCTGCTGCAGGAAC
ACCGACGGCAGGCATTGAAAGACCTGGTACAGGTGGTGCTATCAGGAGGA
GAGGCTTGA
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Synonyms
Publications