NO21G01780, NO21G01780 (gene) Nannochloropsis oceanica

Overview
NameNO21G01780
Unique NameNO21G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1423
Alignment locationchr21:528088..529510 +

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Properties
Property NameValue
DescriptionRibosomal protein L7Ae/L8/Nhp2 family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:528088..529510 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR018492Ribosomal_L7Ae/L8/Nhp2
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO21G01780 vs. NCBI_GenBank
Match: EWM22691.1 (Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 3.700e-46
Identity = 110/211 (52.13%), Postives = 149/211 (70.62%), Query Frame = 0
Query:   83 WIMLPGTERDIFVDRCQKEIAPLLGVVPAAGEGKDEDTAKRTAESDSSYPSSSKPQDKXXQEKKGSKSRV-KVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRLQSFQAFLLAKREYIN 293
            WI +P TERDIFVDRC+KEIAPLLG +P AG  + E+ A           +         + +K +K RV KVFS ++GTA HK+AR+ ICIGINEVTRALE+ +LSLI ICRDV+P RLVEH+AVLAA+R VPFF+LPKA+++LG++LGL+ +AALGF   E +  +  ++G+ D     ++ E  V+  V++RLQSF  FLL K++Y+N
Sbjct:   92 WITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRL--KKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMN 300          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_022051669.1 (ribonuclease P protein subunit p38 isoform X1 [Acanthochromis polyacanthus])

HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  168 RKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEV 250
            R+ + IGINEVT+ALE+ QL L+ +C+ VKPP +  H+  L+A RGVP   +P+ S S+   LGL+ V ALGF  S    EV
Sbjct:  135 RRQLAIGINEVTKALERNQLRLLLVCKSVKPPHMTNHLIALSASRGVPACQVPRLSHSVSEPLGLKSVLALGFKQSSDDDEV 216          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_022051670.1 (ribonuclease P protein subunit p38 isoform X2 [Acanthochromis polyacanthus])

HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  168 RKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEV 250
            R+ + IGINEVT+ALE+ QL L+ +C+ VKPP +  H+  L+A RGVP   +P+ S S+   LGL+ V ALGF  S    EV
Sbjct:   99 RRQLAIGINEVTKALERNQLRLLLVCKSVKPPHMTNHLIALSASRGVPACQVPRLSHSVSEPLGLKSVLALGFKQSSDDDEV 180          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_008297775.1 (PREDICTED: ribonuclease P protein subunit p38 [Stegastes partitus])

HSP 1 Score: 80.5 bits (197), Expect = 1.000e-11
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 0
Query:  167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRLQS 280
            AR+ + IGINEVT+ALE+ QL L+ +C+ VKP  +  H+  L+A RGVP   LP+ S S+   LGL+ V ALGF           Q G  D+     E+ ED V  +++R+ S
Sbjct:  100 ARRQLAIGINEVTKALERNQLRLLLVCKSVKPNHMTNHLIALSASRGVPACQLPRLSQSVSELLGLKSVLALGF----------KQSGSTDK-----EVFEDTVEAIRHRVPS 197          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_008321293.1 (PREDICTED: ribonuclease P protein subunit p38 [Cynoglossus semilaevis])

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-11
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 0
Query:  167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CASEG 246
            AR+ + IGINEVT+ALE+ ++SL+ +C+ VKP  +  H+  L A RGVP   +P+ S+S+ + LGL+ V A+GF  C S G
Sbjct:   99 ARRQLAIGINEVTKALERNEISLVLVCKSVKPQHMTNHLITLCATRGVPACQVPRLSSSVSQPLGLKSVLAIGFRQCPSSG 179          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_015248374.1 (PREDICTED: ribonuclease P protein subunit p38 [Cyprinodon variegatus])

HSP 1 Score: 79.0 bits (193), Expect = 3.000e-11
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CASE 245
            AR+ + IGINEVT+ALE+ QL L+ +C+ V+P  +  H+  L+A RGVP   +P+ S S+   LGL+ V ALGF  C+ E
Sbjct:   99 ARRQLAIGINEVTKALERNQLQLLLVCKSVRPQHMTNHLIALSATRGVPACQVPRLSESIAEQLGLRSVLALGFRQCSEE 178          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_020497626.1 (ribonuclease P protein subunit p38 [Labrus bergylta] >XP_020497627.1 ribonuclease P protein subunit p38 [Labrus bergylta])

HSP 1 Score: 79.0 bits (193), Expect = 3.000e-11
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query:  167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CASE 245
            AR+ + IGINEVT+ALE+ +L L+ +C+ V+P  + +H+  L+A RGVP   +P+ S SL   LGL+ V ALGF  CAS+
Sbjct:  103 ARRQLAIGINEVTKALERNELKLLLVCKSVRPKHMTDHLIALSATRGVPACQVPRLSQSLSVPLGLKSVLALGFRCCASK 182          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_013871109.1 (PREDICTED: ribonuclease P protein subunit p38 [Austrofundulus limnaeus])

HSP 1 Score: 77.8 bits (190), Expect = 6.600e-11
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 0
Query:  167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRL 278
            AR+ + IGINEVT+ALE+ QL L+ +C+ V+P  + +H+  L+A RGVP   +P+ S S+   LGL+ V ALGF       + S + G         EM +DVV  ++ R+
Sbjct:   98 ARRQLAIGINEVTKALERNQLQLLLVCKSVRPQHMTDHLIALSATRGVPTCQVPRLSESMSGPLGLKSVLALGF------RQCSPEDG---------EMFKDVVDAIKPRV 193          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_018541652.1 (PREDICTED: ribonuclease P protein subunit p38 [Lates calcarifer] >XP_018541653.1 PREDICTED: ribonuclease P protein subunit p38 [Lates calcarifer])

HSP 1 Score: 77.8 bits (190), Expect = 6.600e-11
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0
Query:  167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CAS 244
            AR+ + IGINEVT+ALE+ +L L+ +C+ VKP  +  H+  L+ +RGVP   +P+ + +L   LGL+ V ALGF  CAS
Sbjct:   98 ARRQLAIGINEVTKALERNELKLVLVCKSVKPKHMTSHLIALSVMRGVPACQVPRLNQNLSEPLGLKSVLALGFRRCAS 176          
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_019948990.1 (PREDICTED: ribonuclease P protein subunit p38 [Paralichthys olivaceus])

HSP 1 Score: 77.8 bits (190), Expect = 6.600e-11
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 0
Query:  148 SKSRVKVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CAS 244
            S+S  +V  + +       AR+ + IGINEVT+ALE+ +L L+ +C+ VKP  +  H+  L+A RGVP   +P+ S S+   LGL+ V ALGF  CAS
Sbjct:   80 SESAAQVQDSPKNGWTDVAARRQLAIGINEVTKALERNELRLVLVCKSVKPNHMTSHLITLSATRGVPACQVPRLSQSMSEPLGLKSVLALGFRRCAS 177          
The following BLAST results are available for this feature:
BLAST of NO21G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22691.13.700e-4652.13Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloro... [more]
XP_022051669.17.800e-1248.78ribonuclease P protein subunit p38 isoform X1 [Aca... [more]
XP_022051670.17.800e-1248.78ribonuclease P protein subunit p38 isoform X2 [Aca... [more]
XP_008297775.11.000e-1141.59PREDICTED: ribonuclease P protein subunit p38 [Ste... [more]
XP_008321293.11.300e-1146.91PREDICTED: ribonuclease P protein subunit p38 [Cyn... [more]
XP_015248374.13.000e-1147.50PREDICTED: ribonuclease P protein subunit p38 [Cyp... [more]
XP_020497626.13.000e-1148.75ribonuclease P protein subunit p38 [Labrus bergylt... [more]
XP_013871109.16.600e-1139.64PREDICTED: ribonuclease P protein subunit p38 [Aus... [more]
XP_018541652.16.600e-1146.84PREDICTED: ribonuclease P protein subunit p38 [Lat... [more]
XP_019948990.16.600e-1142.86PREDICTED: ribonuclease P protein subunit p38 [Par... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004601NSK004601Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01780.1NO21G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602616gene_8142Nannochloropsis oceanica (N. oceanica CCMP1779)gene
rpp38gene7760Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01780.1NO21G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01780 ID=NO21G01780|Name=NO21G01780|organism=Nannochloropsis oceanica|type=gene|length=1423bp
ATGCTTATGCCGGGGAGCAAGAACAAGAAAGTCGCAGGGCAAAAGCGGCC
ACGGTCTATTCCACTTCTTCCCACGTTCCCTTACCAGCACCAGCACCAAC
AGCCGAGAGGCATACTGCCAAAGGCTGCAGGCGACCTTCAACAGCACCAA
CAACAGAACCAACAGCAGCAGGAGCATCAACATCAGCATCTTAACAAGAA
GAAGTCGAAGAAGGAAGACAAGGATGCGGGCATGGGCTTGGGGGCATGGA
TCATGCTGCCAGgtgggtgaggaggtcgacttcagctctttagcgcgctg
tccaatggctcaccattgcgccagcgcgttaattttgtaagcatggctgt
acttcatttgttatcatcgctacgcttgcatgcttgatctgtcatgccca
tcgtgttctcgttcactcacccgaccctaaaccaacctactttactttta
ctagGGACGGAGCGCGACATTTTTGTAGACAGgtaagagcttgctctggg
aagggttgaggaaactcacagtcaacacatgtgggagtcgactaattcgt
ctgcctcgcggcatagGTGTCAGAAGGAAATCGCACCGCTGTTAGGCGTC
GTCCCAGCGGCAGGAGAGGGGAAGGACGAGGACACTGCGAAACGGACGGC
TGAGTCGGACAGCAGCTATCCGAGCTCCAGCAAACCACAAGACAAGGATA
AACAGGAGAAGAAGGGGTCAAAATCGCGGGTGAAGGTATTCTCGGCCAAG
GAAGGGgtaagttcgccttctgcacattgcgggcccatgcctgaagtcta
ctgctggctctttcttacacacctgctccatcacactccccgtagACGGC
CGCCCACAAGTACGCCCGAAAATTTATCTGTATTGGTATCAACGAAGTAA
CTCGCGCCTTGGAGAAGGGTCAGCTTTCCCTCATCTTCATCTGCAGgtgc
gtgcttgcgtggagtagtgcatgtgggggggggaggaaggctatggaaaa
aggaatggaacggacacattcttagtaccttctccctctctccgcacttc
actcttataaacatacagAGACGTCAAGCCGCCACGTCTGGTGGAGCACA
TTGCTGTCCTTGCCGCCTTGCGTGGTGTCCCTTTCTTTGTTCTGCCCAAG
GCTTCCACTTCATTAGGTCGGTCATTGGGCCTCCAGCGCGTCGCCGCTCT
GGGGTTCTGCGCCAGCGAGGGTATATCTGAAGTCTCAGCTCAAAGAGGAA
AAGGAGATGAGGGAGAAAGAGTGGATGAGATGGAGGAAGATGTGGTCTCC
GGTGTACAAAATCGCTTGCAGTCATTTCAGGCCTTCTTGCTCGCGAAGCG
GGAATACATAAATGGCGGGGAGGGTGTGGTGGTGGAAAAGGAAGTTAAGG
GAGGGATGGGATGGCGGCTATGA
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protein sequence of NO21G01780.1

>NO21G01780.1-protein ID=NO21G01780.1-protein|Name=NO21G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MLMPGSKNKKVAGQKRPRSIPLLPTFPYQHQHQQPRGILPKAAGDLQQHQ
QQNQQQQEHQHQHLNKKKSKKEDKDAGMGLGAWIMLPGTERDIFVDRCQK
EIAPLLGVVPAAGEGKDEDTAKRTAESDSSYPSSSKPQDKDKQEKKGSKS
RVKVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPR
LVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVS
AQRGKGDEGERVDEMEEDVVSGVQNRLQSFQAFLLAKREYINGGEGVVVE
KEVKGGMGWRL*
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Synonyms
Publications