NO21G01780, NO21G01780 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G01780 vs. NCBI_GenBank
Match: EWM22691.1 (Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloropsis gaditana]) HSP 1 Score: 194.9 bits (494), Expect = 3.700e-46 Identity = 110/211 (52.13%), Postives = 149/211 (70.62%), Query Frame = 0
Query: 83 WIMLPGTERDIFVDRCQKEIAPLLGVVPAAGEGKDEDTAKRTAESDSSYPSSSKPQDKXXQEKKGSKSRV-KVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRLQSFQAFLLAKREYIN 293
WI +P TERDIFVDRC+KEIAPLLG +P AG + E+ A + + +K +K RV KVFS ++GTA HK+AR+ ICIGINEVTRALE+ +LSLI ICRDV+P RLVEH+AVLAA+R VPFF+LPKA+++LG++LGL+ +AALGF E + + ++G+ D ++ E V+ V++RLQSF FLL K++Y+N
Sbjct: 92 WITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRL--KKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMN 300
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_022051669.1 (ribonuclease P protein subunit p38 isoform X1 [Acanthochromis polyacanthus]) HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12 Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 168 RKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEV 250
R+ + IGINEVT+ALE+ QL L+ +C+ VKPP + H+ L+A RGVP +P+ S S+ LGL+ V ALGF S EV
Sbjct: 135 RRQLAIGINEVTKALERNQLRLLLVCKSVKPPHMTNHLIALSASRGVPACQVPRLSHSVSEPLGLKSVLALGFKQSSDDDEV 216
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_022051670.1 (ribonuclease P protein subunit p38 isoform X2 [Acanthochromis polyacanthus]) HSP 1 Score: 80.9 bits (198), Expect = 7.800e-12 Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 168 RKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEV 250
R+ + IGINEVT+ALE+ QL L+ +C+ VKPP + H+ L+A RGVP +P+ S S+ LGL+ V ALGF S EV
Sbjct: 99 RRQLAIGINEVTKALERNQLRLLLVCKSVKPPHMTNHLIALSASRGVPACQVPRLSHSVSEPLGLKSVLALGFKQSSDDDEV 180
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_008297775.1 (PREDICTED: ribonuclease P protein subunit p38 [Stegastes partitus]) HSP 1 Score: 80.5 bits (197), Expect = 1.000e-11 Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 0
Query: 167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRLQS 280
AR+ + IGINEVT+ALE+ QL L+ +C+ VKP + H+ L+A RGVP LP+ S S+ LGL+ V ALGF Q G D+ E+ ED V +++R+ S
Sbjct: 100 ARRQLAIGINEVTKALERNQLRLLLVCKSVKPNHMTNHLIALSASRGVPACQLPRLSQSVSELLGLKSVLALGF----------KQSGSTDK-----EVFEDTVEAIRHRVPS 197
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_008321293.1 (PREDICTED: ribonuclease P protein subunit p38 [Cynoglossus semilaevis]) HSP 1 Score: 80.1 bits (196), Expect = 1.300e-11 Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 0
Query: 167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CASEG 246
AR+ + IGINEVT+ALE+ ++SL+ +C+ VKP + H+ L A RGVP +P+ S+S+ + LGL+ V A+GF C S G
Sbjct: 99 ARRQLAIGINEVTKALERNEISLVLVCKSVKPQHMTNHLITLCATRGVPACQVPRLSSSVSQPLGLKSVLAIGFRQCPSSG 179
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_015248374.1 (PREDICTED: ribonuclease P protein subunit p38 [Cyprinodon variegatus]) HSP 1 Score: 79.0 bits (193), Expect = 3.000e-11 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CASE 245
AR+ + IGINEVT+ALE+ QL L+ +C+ V+P + H+ L+A RGVP +P+ S S+ LGL+ V ALGF C+ E
Sbjct: 99 ARRQLAIGINEVTKALERNQLQLLLVCKSVRPQHMTNHLIALSATRGVPACQVPRLSESIAEQLGLRSVLALGFRQCSEE 178
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_020497626.1 (ribonuclease P protein subunit p38 [Labrus bergylta] >XP_020497627.1 ribonuclease P protein subunit p38 [Labrus bergylta]) HSP 1 Score: 79.0 bits (193), Expect = 3.000e-11 Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CASE 245
AR+ + IGINEVT+ALE+ +L L+ +C+ V+P + +H+ L+A RGVP +P+ S SL LGL+ V ALGF CAS+
Sbjct: 103 ARRQLAIGINEVTKALERNELKLLLVCKSVRPKHMTDHLIALSATRGVPACQVPRLSQSLSVPLGLKSVLALGFRCCASK 182
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_013871109.1 (PREDICTED: ribonuclease P protein subunit p38 [Austrofundulus limnaeus]) HSP 1 Score: 77.8 bits (190), Expect = 6.600e-11 Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 0
Query: 167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRL 278
AR+ + IGINEVT+ALE+ QL L+ +C+ V+P + +H+ L+A RGVP +P+ S S+ LGL+ V ALGF + S + G EM +DVV ++ R+
Sbjct: 98 ARRQLAIGINEVTKALERNQLQLLLVCKSVRPQHMTDHLIALSATRGVPTCQVPRLSESMSGPLGLKSVLALGF------RQCSPEDG---------EMFKDVVDAIKPRV 193
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_018541652.1 (PREDICTED: ribonuclease P protein subunit p38 [Lates calcarifer] >XP_018541653.1 PREDICTED: ribonuclease P protein subunit p38 [Lates calcarifer]) HSP 1 Score: 77.8 bits (190), Expect = 6.600e-11 Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0
Query: 167 ARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CAS 244
AR+ + IGINEVT+ALE+ +L L+ +C+ VKP + H+ L+ +RGVP +P+ + +L LGL+ V ALGF CAS
Sbjct: 98 ARRQLAIGINEVTKALERNELKLVLVCKSVKPKHMTSHLIALSVMRGVPACQVPRLNQNLSEPLGLKSVLALGFRRCAS 176
BLAST of NO21G01780 vs. NCBI_GenBank
Match: XP_019948990.1 (PREDICTED: ribonuclease P protein subunit p38 [Paralichthys olivaceus]) HSP 1 Score: 77.8 bits (190), Expect = 6.600e-11 Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 148 SKSRVKVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGF--CAS 244
S+S +V + + AR+ + IGINEVT+ALE+ +L L+ +C+ VKP + H+ L+A RGVP +P+ S S+ LGL+ V ALGF CAS
Sbjct: 80 SESAAQVQDSPKNGWTDVAARRQLAIGINEVTKALERNELRLVLVCKSVKPNHMTSHLITLSATRGVPACQVPRLSQSMSEPLGLKSVLALGFRRCAS 177 The following BLAST results are available for this feature:
BLAST of NO21G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G01780 ID=NO21G01780|Name=NO21G01780|organism=Nannochloropsis oceanica|type=gene|length=1423bpback to top protein sequence of NO21G01780.1 >NO21G01780.1-protein ID=NO21G01780.1-protein|Name=NO21G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bpback to top Synonyms
Publications
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