NO21G01780.1, NO21G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01780.1
Unique NameNO21G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr21:528088..529510 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:528088..529510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01780.1 vs.
Match: EWM22691.1 (Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloropsis gaditana])

HSP 1 Score: 204.9 bits (520), Expect = 3.600e-49
Identity = 137/307 (44.63%), Postives = 184/307 (59.93%), Query Frame = 0 
Query:    1 MLMPGSKNKKVAGQKRPRS-----IPLLPTFPYQHQHQQPRGILPKAAGDLQQHQQQNQQQQEHQHQHLNK------KKSKKEDKDAGMGLGAWIMLPGTERDIFVDRCQKEIAPLLGVVPAAGEGKDEDTAKRTAESDSSYPSSSKPQDK----DKQEKKGSKSRVKVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPRLVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVSAQRGKGDEGERVDEMEEDVVSGVQNRLQSFQAFLLAKREYIN 293
            M+ PG  ++    QKRP        PL                   A+    QH  Q +++Q  Q +H +K      KKSKKED    +G+ AWI +P TERDIFVDRC+KEIAPLLG +P AG  + E+ A      D        P       D+  KK      KVFS ++GTA HK+AR+ ICIGINEVTRALE+ +LSLI ICRDV+P RLVEH+AVLAA+R VPFF+LPKA+++LG++LGL+ +AALGF   E +  +  ++G+ D     ++ E  V+  V++RLQSF  FLL K++Y+N
Sbjct:    1 MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKED--LAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHT---DDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRL--KKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMN 300
The following BLAST results are available for this feature:
BLAST of NO21G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900Expect = 3.60e-49 / Id = 44.63SequenceEWM22691.1
Match NameE-valueIdentityDescription
EWM22691.13.600e-4944.63Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01780NO21G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01780.1NO21G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01780.1.cds1NO21G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01780.1.cds2NO21G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01780.1.cds3NO21G01780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01780.1.cds4NO21G01780.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01780.1.cds5NO21G01780.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01780.1 ID=NO21G01780.1|Name=NO21G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ATGCTTATGCCGGGGAGCAAGAACAAGAAAGTCGCAGGGCAAAAGCGGCC
ACGGTCTATTCCACTTCTTCCCACGTTCCCTTACCAGCACCAGCACCAAC
AGCCGAGAGGCATACTGCCAAAGGCTGCAGGCGACCTTCAACAGCACCAA
CAACAGAACCAACAGCAGCAGGAGCATCAACATCAGCATCTTAACAAGAA
GAAGTCGAAGAAGGAAGACAAGGATGCGGGCATGGGCTTGGGGGCATGGA
TCATGCTGCCAGGGACGGAGCGCGACATTTTTGTAGACAGGTGTCAGAAG
GAAATCGCACCGCTGTTAGGCGTCGTCCCAGCGGCAGGAGAGGGGAAGGA
CGAGGACACTGCGAAACGGACGGCTGAGTCGGACAGCAGCTATCCGAGCT
CCAGCAAACCACAAGACAAGGATAAACAGGAGAAGAAGGGGTCAAAATCG
CGGGTGAAGGTATTCTCGGCCAAGGAAGGGACGGCCGCCCACAAGTACGC
CCGAAAATTTATCTGTATTGGTATCAACGAAGTAACTCGCGCCTTGGAGA
AGGGTCAGCTTTCCCTCATCTTCATCTGCAGAGACGTCAAGCCGCCACGT
CTGGTGGAGCACATTGCTGTCCTTGCCGCCTTGCGTGGTGTCCCTTTCTT
TGTTCTGCCCAAGGCTTCCACTTCATTAGGTCGGTCATTGGGCCTCCAGC
GCGTCGCCGCTCTGGGGTTCTGCGCCAGCGAGGGTATATCTGAAGTCTCA
GCTCAAAGAGGAAAAGGAGATGAGGGAGAAAGAGTGGATGAGATGGAGGA
AGATGTGGTCTCCGGTGTACAAAATCGCTTGCAGTCATTTCAGGCCTTCT
TGCTCGCGAAGCGGGAATACATAAATGGCGGGGAGGGTGTGGTGGTGGAA
AAGGAAGTTAAGGGAGGGATGGGATGGCGGCTATGA
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protein sequence of NO21G01780.1

>NO21G01780.1-protein ID=NO21G01780.1-protein|Name=NO21G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MLMPGSKNKKVAGQKRPRSIPLLPTFPYQHQHQQPRGILPKAAGDLQQHQ
QQNQQQQEHQHQHLNKKKSKKEDKDAGMGLGAWIMLPGTERDIFVDRCQK
EIAPLLGVVPAAGEGKDEDTAKRTAESDSSYPSSSKPQDKDKQEKKGSKS
RVKVFSAKEGTAAHKYARKFICIGINEVTRALEKGQLSLIFICRDVKPPR
LVEHIAVLAALRGVPFFVLPKASTSLGRSLGLQRVAALGFCASEGISEVS
AQRGKGDEGERVDEMEEDVVSGVQNRLQSFQAFLLAKREYINGGEGVVVE
KEVKGGMGWRL*
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mRNA from alignment at chr21:528088..529510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01780.1 ID=NO21G01780.1|Name=NO21G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1423bp|location=Sequence derived from alignment at chr21:528088..529510+ (Nannochloropsis oceanica)
ATGCTTATGCCGGGGAGCAAGAACAAGAAAGTCGCAGGGCAAAAGCGGCC
ACGGTCTATTCCACTTCTTCCCACGTTCCCTTACCAGCACCAGCACCAAC
AGCCGAGAGGCATACTGCCAAAGGCTGCAGGCGACCTTCAACAGCACCAA
CAACAGAACCAACAGCAGCAGGAGCATCAACATCAGCATCTTAACAAGAA
GAAGTCGAAGAAGGAAGACAAGGATGCGGGCATGGGCTTGGGGGCATGGA
TCATGCTGCCAGGTGGGTGAGGAGGTCGACTTCAGCTCTTTAGCGCGCTG
TCCAATGGCTCACCATTGCGCCAGCGCGTTAATTTTGTAAGCATGGCTGT
ACTTCATTTGTTATCATCGCTACGCTTGCATGCTTGATCTGTCATGCCCA
TCGTGTTCTCGTTCACTCACCCGACCCTAAACCAACCTACTTTACTTTTA
CTAGGGACGGAGCGCGACATTTTTGTAGACAGGTAAGAGCTTGCTCTGGG
AAGGGTTGAGGAAACTCACAGTCAACACATGTGGGAGTCGACTAATTCGT
CTGCCTCGCGGCATAGGTGTCAGAAGGAAATCGCACCGCTGTTAGGCGTC
GTCCCAGCGGCAGGAGAGGGGAAGGACGAGGACACTGCGAAACGGACGGC
TGAGTCGGACAGCAGCTATCCGAGCTCCAGCAAACCACAAGACAAGGATA
AACAGGAGAAGAAGGGGTCAAAATCGCGGGTGAAGGTATTCTCGGCCAAG
GAAGGGGTAAGTTCGCCTTCTGCACATTGCGGGCCCATGCCTGAAGTCTA
CTGCTGGCTCTTTCTTACACACCTGCTCCATCACACTCCCCGTAGACGGC
CGCCCACAAGTACGCCCGAAAATTTATCTGTATTGGTATCAACGAAGTAA
CTCGCGCCTTGGAGAAGGGTCAGCTTTCCCTCATCTTCATCTGCAGGTGC
GTGCTTGCGTGGAGTAGTGCATGTGGGGGGGGGAGGAAGGCTATGGAAAA
AGGAATGGAACGGACACATTCTTAGTACCTTCTCCCTCTCTCCGCACTTC
ACTCTTATAAACATACAGAGACGTCAAGCCGCCACGTCTGGTGGAGCACA
TTGCTGTCCTTGCCGCCTTGCGTGGTGTCCCTTTCTTTGTTCTGCCCAAG
GCTTCCACTTCATTAGGTCGGTCATTGGGCCTCCAGCGCGTCGCCGCTCT
GGGGTTCTGCGCCAGCGAGGGTATATCTGAAGTCTCAGCTCAAAGAGGAA
AAGGAGATGAGGGAGAAAGAGTGGATGAGATGGAGGAAGATGTGGTCTCC
GGTGTACAAAATCGCTTGCAGTCATTTCAGGCCTTCTTGCTCGCGAAGCG
GGAATACATAAATGGCGGGGAGGGTGTGGTGGTGGAAAAGGAAGTTAAGG
GAGGGATGGGATGGCGGCTATGA
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Coding sequence (CDS) from alignment at chr21:528088..529510+

>NO21G01780.1 ID=NO21G01780.1|Name=NO21G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr21:528088..529510+ (Nannochloropsis oceanica)
ATGCTTATGCCGGGGAGCAAGAACAAGAAAGTCGCAGGGCAAAAGCGGCC
ACGGTCTATTCCACTTCTTCCCACGTTCCCTTACCAGCACCAGCACCAAC
AGCCGAGAGGCATACTGCCAAAGGCTGCAGGCGACCTTCAACAGCACCAA
CAACAGAACCAACAGCAGCAGGAGCATCAACATCAGCATCTTAACAAGAA
GAAGTCGAAGAAGGAAGACAAGGATGCGGGCATGGGCTTGGGGGCATGGA
TCATGCTGCCAGGGACGGAGCGCGACATTTTTGTAGACAGGTGTCAGAAG
GAAATCGCACCGCTGTTAGGCGTCGTCCCAGCGGCAGGAGAGGGGAAGGA
CGAGGACACTGCGAAACGGACGGCTGAGTCGGACAGCAGCTATCCGAGCT
CCAGCAAACCACAAGACAAGGATAAACAGGAGAAGAAGGGGTCAAAATCG
CGGGTGAAGGTATTCTCGGCCAAGGAAGGGACGGCCGCCCACAAGTACGC
CCGAAAATTTATCTGTATTGGTATCAACGAAGTAACTCGCGCCTTGGAGA
AGGGTCAGCTTTCCCTCATCTTCATCTGCAGAGACGTCAAGCCGCCACGT
CTGGTGGAGCACATTGCTGTCCTTGCCGCCTTGCGTGGTGTCCCTTTCTT
TGTTCTGCCCAAGGCTTCCACTTCATTAGGTCGGTCATTGGGCCTCCAGC
GCGTCGCCGCTCTGGGGTTCTGCGCCAGCGAGGGTATATCTGAAGTCTCA
GCTCAAAGAGGAAAAGGAGATGAGGGAGAAAGAGTGGATGAGATGGAGGA
AGATGTGGTCTCCGGTGTACAAAATCGCTTGCAGTCATTTCAGGCCTTCT
TGCTCGCGAAGCGGGAATACATAAATGGCGGGGAGGGTGTGGTGGTGGAA
AAGGAAGTTAAGGGAGGGATGGGATGGCGGCTATGA
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Synonyms
Publications