NO21G01590, NO21G01590 (gene) Nannochloropsis oceanica

Overview
NameNO21G01590
Unique NameNO21G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2113
Alignment locationchr21:470887..472999 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:470887..472999 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO21G01590 vs. NCBI_GenBank
Match: EWM22639.1 (hypothetical protein Naga_100023g37 [Nannochloropsis gaditana])

HSP 1 Score: 344.4 bits (882), Expect = 5.800e-91
Identity = 181/325 (55.69%), Postives = 214/325 (65.85%), Query Frame = 0 
Query:  137 DDDSSGIEIRGGMIANWRKSTPLRPCYGCTPGAPMAFSNLFSECSFVTLGAQMGVAPVFTNLTLKTNDTVLVHLVGSRFFFPEASELFSFLTSTLGGTCPEGNRLQNLTSVCTLGGQAAPVGSDGPALCTIYSVNATKVHGFGKEGVGEGREEVHVQAHGLYGPGEYRFNFQDFNNVGFPYAFWVLQYLNIEAPGEGRRENTANVTVSGQFNNQPPRVPPARLWTVTFVVALVVFVVFAAIFNPWVGPRAIDLGARIPLVRRNVLEERQTGPTVLPPSSASVSSLQGRRSTLMAMGHGSGSSXXXXSGRGFDLRSMASSEDYQLM 462
            +D    I+   G+IANWRKSTPLRPC+GCTPG PMAFS++FSECSFVTLGA MG+AP ++ L ++TNDTVLV LVGSR FF EAS+LFSFLT  L GTCPE NRLQNLTS+C+  G       D P  CTIY++NATK+H    + V  G      QAHGLYGPG YRF+F+DF N  FPYAFWVLQYL  E  G     N ANVTV GQFNNQPP VPP +L+T  F+ A+++F VFA  FNPWVG  A DLG R+P  RRN L     G    P      S +  RR++       S S        G+ +RSM SSEDY L+
Sbjct:  132 EDGKDDIDAARGVIANWRKSTPLRPCFGCTPGLPMAFSSMFSECSFVTLGAHMGIAPAYSKLVVRTNDTVLVRLVGSRLFFSEASDLFSFLTDFLHGTCPESNRLQNLTSMCSWNGARTGPDIDAPP-CTIYAINATKIH----DQVPGGAALDRPQAHGLYGPGTYRFSFRDFENNDFPYAFWVLQYLRAEQAG----GNLANVTVVGQFNNQPPPVPPVKLFTSVFIAAVILFTVFAVFFNPWVGAEAADLGTRVPWFRRNFLRSHNLGSVSQPR-----SYIPTRRNSAWMPSSSSAS--------GYHMRSMVSSEDYHLL 434
The following BLAST results are available for this feature:
BLAST of NO21G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22639.15.800e-9155.69hypothetical protein Naga_100023g37 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004636NSK004636Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01590.1NO21G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602556gene_8117Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g37gene7793Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01590.1NO21G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01590 ID=NO21G01590|Name=NO21G01590|organism=Nannochloropsis oceanica|type=gene|length=2113bp
CGGTTCCGTGGGAGGGAGTGAGGAAATTTGGGCAGGATATTGTGCGCGGT
CTGGCACGAGAGAGGACGCTCTACGTCACGAGGTTGGAAAAAAACAGTTG
TATGCAGCTTACAATCGTGGTGTATGGACAGGGGTTTTCAACTGAAAGGA
CGAAAACAATTGCTGCTTCCCCCGCGCCACGACATGACATGGAAAACCGA
ATTCAAAAAATGACCATCACGTGCTATTTTAATGCGCCACTCATCTCGAC
ACCACATAACACCCTCTCACCCACGAATCACTTGCATCTACTCCCCACCT
TTACACAGGCTAAGAGCTTGGCACCCTGCGTCCTTTTTCCCCGTGCCAAT
CGTCATCCTCATCATTCTGCGTCATCCGTCCTAGCAGCGCCCAAGCTTTC
TCCTCAGTTCTTGCAGCCAAACCCTTAATATCGTGATGCCCAGGAGGGAC
CCACATACATTCAGTATACCATCATTACAGCCAGGCATCGACGATGTTAC
CACAGCAAAGAGGAGCGGCAGACGCACAACATCAATCAGGATGGCTTTTT
CGGCATCGAAGCTCGTGATTCTCCTTCTCATCCTCGTAGCCCAAGCAAAA
ACTGGGGCGACCGCCGCGAGACTGACGACGACGACAAGAAGTTCCGCAGC
AGCAGCTTTGACGACGGGTTACGTAGCGCCACCACCTCCATCACTGTTCT
TTCGCCCTGCCGGACGCTCTCTCCTTCGAGAAATGCCCGTCGACGACACC
TCATCCATTTCTTCCTTGTACTCCGTGTCCTCTTCTCATGGACTACCATC
GCCAATACCACCGATCAACGATGACAATGACGACCAATACCAAGACGATG
ACAGCAGCGGGATCGAGATCCGCGGAGGGATGATTGCAAACTGGCGGAAA
TCCACTCCCTTGCGCCCTTGCTACGGTTGCACCCCCGGGGCACCCATGGC
TTTTTCTAACCTCTTTTCAGAGTGTTCTTTCGTCACCTTGGGGGCACAAA
TGGGTGTCGCCCCCGTATTCACCAACCTCACACTAAAAACAAACGACACG
GTGTTGGTGCACCTCGTCGGGTCCCGTTTTTTCTTCCCCGAGGCCAGTGA
GTTGTTTTCATTTCTGACTAGTACTTTGGGTGGCACTTGCCCGGAAGGTA
ATCGACTGCAAAATCTTACGTCAGTTTGTACGCTGGGTGGGCAGGCAGCA
CCTGTTGGATCTGACGGGCCAGCGTTGTGCACGATTTATAGTGTGAATGC
TACCAAGGTTCATGGCTTTGGGAAGGAAGGTGTTGGGGAAGGGAGGGAGG
AAGTGCATGTGCAAGCTCATGGATTGTATGGTCCTGGAGAGTATCGTTTT
AATTTTCAAGACTTCAACAACGTGGGATTCCCCTATGCTTTTTGGGTTTT
ACAGTATTTGAATATAGAGGCACCGGGGGAGGGAAGAAGGGAGAACACGG
CAAACGTCACTGTCTCTGGTCAATTTAATAATCAACCTCCTCGCGTGCCA
CCTGCGAGGCTATGGACGGTTACCTTCGTGGTAGCATTAGTTGTGTTCGT
AGTATTTGCAGCCATATTCAACCCTTGGGTAGGCCCGCGAGCGATTGACC
TTGGGGCAAGAATTCCTTTGGTGAGACGCAATGTCCTGGAGGAACGACAG
ACAGGCCCGACGGTACTGCCTCCTTCATCTGCATCTGTCTCGAGTCTTCA
AGGGCGGCGGTCCACTTTGATGGCGATGGGACATGGGAGTGGGAGTAGTG
GGATGGGAGGGTCAGGGAGAGGTTTTGATTTGCGTTCGATGGCCTCGAGC
GAGGATTACCAGTTGATGGGGAAATCAACATCTCGTCATCCGCTTACCAG
ATGATAGATACGCACAGAGGAGTCATTAATGTAGCCTTGTGTTAATTTTA
TAGCGGTATGAATCGACAGAAACTGAGGTGATATAGTTTTTCTTGTTTCA
GACGGGAGTGGTGTGGGTTGGGAACGGTAAGGGGAGGGTAGGAGGACCGG
GGAGAGGCGTTTGGATGGGCATATATTTTGCAGTCAACATCTGTACATAT
AAAGCAAGTCGAGACTCGAATGAACAGACACTTGGAAAGAAAAATGAAGA
AGCGAGAGGACAG
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protein sequence of NO21G01590.1

>NO21G01590.1-protein ID=NO21G01590.1-protein|Name=NO21G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MPRRDPHTFSIPSLQPGIDDVTTAKRSGRRTTSIRMAFSASKLVILLLIL
VAQAKTGATAARLTTTTRSSAAAALTTGYVAPPPPSLFFRPAGRSLLREM
PVDDTSSISSLYSVSSSHGLPSPIPPINDDNDDQYQDDDSSGIEIRGGMI
ANWRKSTPLRPCYGCTPGAPMAFSNLFSECSFVTLGAQMGVAPVFTNLTL
KTNDTVLVHLVGSRFFFPEASELFSFLTSTLGGTCPEGNRLQNLTSVCTL
GGQAAPVGSDGPALCTIYSVNATKVHGFGKEGVGEGREEVHVQAHGLYGP
GEYRFNFQDFNNVGFPYAFWVLQYLNIEAPGEGRRENTANVTVSGQFNNQ
PPRVPPARLWTVTFVVALVVFVVFAAIFNPWVGPRAIDLGARIPLVRRNV
LEERQTGPTVLPPSSASVSSLQGRRSTLMAMGHGSGSSGMGGSGRGFDLR
SMASSEDYQLMGKSTSRHPLTR*
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Synonyms
Publications