NO21G01590.1, NO21G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01590.1
Unique NameNO21G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2113
Alignment locationchr21:470887..472999 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:470887..472999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01590.1 vs.
Match: EWM22639.1 (hypothetical protein Naga_100023g37 [Nannochloropsis gaditana])

HSP 1 Score: 344.0 bits (881), Expect = 7.500e-91
Identity = 181/325 (55.69%), Postives = 214/325 (65.85%), Query Frame = 0 
Query:  137 DDDSSGIEIRGGMIANWRKSTPLRPCYGCTPGAPMAFSNLFSECSFVTLGAQMGVAPVFTNLTLKTNDTVLVHLVGSRFFFPEASELFSFLTSTLGGTCPEGNRLQNLTSVCTLGGQAAPVGSDGPALCTIYSVNATKVHGFGKEGVGEGREEVHVQAHGLYGPGEYRFNFQDFNNVGFPYAFWVLQYLNIEAPGEGRRENTANVTVSGQFNNQPPRVPPARLWTVTFVVALVVFVVFAAIFNPWVGPRAIDLGARIPLVRRNVLEERQTGPTVLPPSSASVSSLQGRRSTLMAMGHGSGSSGMGGSGRGFDLRSMASSEDYQLM 462
            +D    I+   G+IANWRKSTPLRPC+GCTPG PMAFS++FSECSFVTLGA MG+AP ++ L ++TNDTVLV LVGSR FF EAS+LFSFLT  L GTCPE NRLQNLTS+C+  G       D P  CTIY++NATK+H    + V  G      QAHGLYGPG YRF+F+DF N  FPYAFWVLQYL  E  G     N ANVTV GQFNNQPP VPP +L+T  F+ A+++F VFA  FNPWVG  A DLG R+P  RRN L     G    P      S +  RR++       S S        G+ +RSM SSEDY L+
Sbjct:  132 EDGKDDIDAARGVIANWRKSTPLRPCFGCTPGLPMAFSSMFSECSFVTLGAHMGIAPAYSKLVVRTNDTVLVRLVGSRLFFSEASDLFSFLTDFLHGTCPESNRLQNLTSMCSWNGARTGPDIDAPP-CTIYAINATKIH----DQVPGGAALDRPQAHGLYGPGTYRFSFRDFENNDFPYAFWVLQYLRAEQAG----GNLANVTVVGQFNNQPPPVPPVKLFTSVFIAAVILFTVFAVFFNPWVGAEAADLGTRVPWFRRNFLRSHNLGSVSQPR-----SYIPTRRNSAWMPSSSSAS--------GYHMRSMVSSEDYHLL 434
The following BLAST results are available for this feature:
BLAST of NO21G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22639.17.500e-9155.69hypothetical protein Naga_100023g37 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01590NO21G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01590.1NO21G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01590.1.cds1NO21G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01590.1 ID=NO21G01590.1|Name=NO21G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp
CGGTTCCGTGGGAGGGAGTGAGGAAATTTGGGCAGGATATTGTGCGCGGT
CTGGCACGAGAGAGGACGCTCTACGTCACGAGGTTGGAAAAAAACAGTTG
TATGCAGCTTACAATCGTGGTGTATGGACAGGGGTTTTCAACTGAAAGGA
CGAAAACAATTGCTGCTTCCCCCGCGCCACGACATGACATGGAAAACCGA
ATTCAAAAAATGACCATCACGTGCTATTTTAATGCGCCACTCATCTCGAC
ACCACATAACACCCTCTCACCCACGAATCACTTGCATCTACTCCCCACCT
TTACACAGGCTAAGAGCTTGGCACCCTGCGTCCTTTTTCCCCGTGCCAAT
CGTCATCCTCATCATTCTGCGTCATCCGTCCTAGCAGCGCCCAAGCTTTC
TCCTCAGTTCTTGCAGCCAAACCCTTAATATCGTGATGCCCAGGAGGGAC
CCACATACATTCAGTATACCATCATTACAGCCAGGCATCGACGATGTTAC
CACAGCAAAGAGGAGCGGCAGACGCACAACATCAATCAGGATGGCTTTTT
CGGCATCGAAGCTCGTGATTCTCCTTCTCATCCTCGTAGCCCAAGCAAAA
ACTGGGGCGACCGCCGCGAGACTGACGACGACGACAAGAAGTTCCGCAGC
AGCAGCTTTGACGACGGGTTACGTAGCGCCACCACCTCCATCACTGTTCT
TTCGCCCTGCCGGACGCTCTCTCCTTCGAGAAATGCCCGTCGACGACACC
TCATCCATTTCTTCCTTGTACTCCGTGTCCTCTTCTCATGGACTACCATC
GCCAATACCACCGATCAACGATGACAATGACGACCAATACCAAGACGATG
ACAGCAGCGGGATCGAGATCCGCGGAGGGATGATTGCAAACTGGCGGAAA
TCCACTCCCTTGCGCCCTTGCTACGGTTGCACCCCCGGGGCACCCATGGC
TTTTTCTAACCTCTTTTCAGAGTGTTCTTTCGTCACCTTGGGGGCACAAA
TGGGTGTCGCCCCCGTATTCACCAACCTCACACTAAAAACAAACGACACG
GTGTTGGTGCACCTCGTCGGGTCCCGTTTTTTCTTCCCCGAGGCCAGTGA
GTTGTTTTCATTTCTGACTAGTACTTTGGGTGGCACTTGCCCGGAAGGTA
ATCGACTGCAAAATCTTACGTCAGTTTGTACGCTGGGTGGGCAGGCAGCA
CCTGTTGGATCTGACGGGCCAGCGTTGTGCACGATTTATAGTGTGAATGC
TACCAAGGTTCATGGCTTTGGGAAGGAAGGTGTTGGGGAAGGGAGGGAGG
AAGTGCATGTGCAAGCTCATGGATTGTATGGTCCTGGAGAGTATCGTTTT
AATTTTCAAGACTTCAACAACGTGGGATTCCCCTATGCTTTTTGGGTTTT
ACAGTATTTGAATATAGAGGCACCGGGGGAGGGAAGAAGGGAGAACACGG
CAAACGTCACTGTCTCTGGTCAATTTAATAATCAACCTCCTCGCGTGCCA
CCTGCGAGGCTATGGACGGTTACCTTCGTGGTAGCATTAGTTGTGTTCGT
AGTATTTGCAGCCATATTCAACCCTTGGGTAGGCCCGCGAGCGATTGACC
TTGGGGCAAGAATTCCTTTGGTGAGACGCAATGTCCTGGAGGAACGACAG
ACAGGCCCGACGGTACTGCCTCCTTCATCTGCATCTGTCTCGAGTCTTCA
AGGGCGGCGGTCCACTTTGATGGCGATGGGACATGGGAGTGGGAGTAGTG
GGATGGGAGGGTCAGGGAGAGGTTTTGATTTGCGTTCGATGGCCTCGAGC
GAGGATTACCAGTTGATGGGGAAATCAACATCTCGTCATCCGCTTACCAG
ATGATAGATACGCACAGAGGAGTCATTAATGTAGCCTTGTGTTAATTTTA
TAGCGGTATGAATCGACAGAAACTGAGGTGATATAGTTTTTCTTGTTTCA
GACGGGAGTGGTGTGGGTTGGGAACGGTAAGGGGAGGGTAGGAGGACCGG
GGAGAGGCGTTTGGATGGGCATATATTTTGCAGTCAACATCTGTACATAT
AAAGCAAGTCGAGACTCGAATGAACAGACACTTGGAAAGAAAAATGAAGA
AGCGAGAGGACAG
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protein sequence of NO21G01590.1

>NO21G01590.1-protein ID=NO21G01590.1-protein|Name=NO21G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MPRRDPHTFSIPSLQPGIDDVTTAKRSGRRTTSIRMAFSASKLVILLLIL
VAQAKTGATAARLTTTTRSSAAAALTTGYVAPPPPSLFFRPAGRSLLREM
PVDDTSSISSLYSVSSSHGLPSPIPPINDDNDDQYQDDDSSGIEIRGGMI
ANWRKSTPLRPCYGCTPGAPMAFSNLFSECSFVTLGAQMGVAPVFTNLTL
KTNDTVLVHLVGSRFFFPEASELFSFLTSTLGGTCPEGNRLQNLTSVCTL
GGQAAPVGSDGPALCTIYSVNATKVHGFGKEGVGEGREEVHVQAHGLYGP
GEYRFNFQDFNNVGFPYAFWVLQYLNIEAPGEGRRENTANVTVSGQFNNQ
PPRVPPARLWTVTFVVALVVFVVFAAIFNPWVGPRAIDLGARIPLVRRNV
LEERQTGPTVLPPSSASVSSLQGRRSTLMAMGHGSGSSGMGGSGRGFDLR
SMASSEDYQLMGKSTSRHPLTR*
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mRNA from alignment at chr21:470887..472999+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01590.1 ID=NO21G01590.1|Name=NO21G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp|location=Sequence derived from alignment at chr21:470887..472999+ (Nannochloropsis oceanica)
CGGTTCCGTGGGAGGGAGTGAGGAAATTTGGGCAGGATATTGTGCGCGGT
CTGGCACGAGAGAGGACGCTCTACGTCACGAGGTTGGAAAAAAACAGTTG
TATGCAGCTTACAATCGTGGTGTATGGACAGGGGTTTTCAACTGAAAGGA
CGAAAACAATTGCTGCTTCCCCCGCGCCACGACATGACATGGAAAACCGA
ATTCAAAAAATGACCATCACGTGCTATTTTAATGCGCCACTCATCTCGAC
ACCACATAACACCCTCTCACCCACGAATCACTTGCATCTACTCCCCACCT
TTACACAGGCTAAGAGCTTGGCACCCTGCGTCCTTTTTCCCCGTGCCAAT
CGTCATCCTCATCATTCTGCGTCATCCGTCCTAGCAGCGCCCAAGCTTTC
TCCTCAGTTCTTGCAGCCAAACCCTTAATATCGTGATGCCCAGGAGGGAC
CCACATACATTCAGTATACCATCATTACAGCCAGGCATCGACGATGTTAC
CACAGCAAAGAGGAGCGGCAGACGCACAACATCAATCAGGATGGCTTTTT
CGGCATCGAAGCTCGTGATTCTCCTTCTCATCCTCGTAGCCCAAGCAAAA
ACTGGGGCGACCGCCGCGAGACTGACGACGACGACAAGAAGTTCCGCAGC
AGCAGCTTTGACGACGGGTTACGTAGCGCCACCACCTCCATCACTGTTCT
TTCGCCCTGCCGGACGCTCTCTCCTTCGAGAAATGCCCGTCGACGACACC
TCATCCATTTCTTCCTTGTACTCCGTGTCCTCTTCTCATGGACTACCATC
GCCAATACCACCGATCAACGATGACAATGACGACCAATACCAAGACGATG
ACAGCAGCGGGATCGAGATCCGCGGAGGGATGATTGCAAACTGGCGGAAA
TCCACTCCCTTGCGCCCTTGCTACGGTTGCACCCCCGGGGCACCCATGGC
TTTTTCTAACCTCTTTTCAGAGTGTTCTTTCGTCACCTTGGGGGCACAAA
TGGGTGTCGCCCCCGTATTCACCAACCTCACACTAAAAACAAACGACACG
GTGTTGGTGCACCTCGTCGGGTCCCGTTTTTTCTTCCCCGAGGCCAGTGA
GTTGTTTTCATTTCTGACTAGTACTTTGGGTGGCACTTGCCCGGAAGGTA
ATCGACTGCAAAATCTTACGTCAGTTTGTACGCTGGGTGGGCAGGCAGCA
CCTGTTGGATCTGACGGGCCAGCGTTGTGCACGATTTATAGTGTGAATGC
TACCAAGGTTCATGGCTTTGGGAAGGAAGGTGTTGGGGAAGGGAGGGAGG
AAGTGCATGTGCAAGCTCATGGATTGTATGGTCCTGGAGAGTATCGTTTT
AATTTTCAAGACTTCAACAACGTGGGATTCCCCTATGCTTTTTGGGTTTT
ACAGTATTTGAATATAGAGGCACCGGGGGAGGGAAGAAGGGAGAACACGG
CAAACGTCACTGTCTCTGGTCAATTTAATAATCAACCTCCTCGCGTGCCA
CCTGCGAGGCTATGGACGGTTACCTTCGTGGTAGCATTAGTTGTGTTCGT
AGTATTTGCAGCCATATTCAACCCTTGGGTAGGCCCGCGAGCGATTGACC
TTGGGGCAAGAATTCCTTTGGTGAGACGCAATGTCCTGGAGGAACGACAG
ACAGGCCCGACGGTACTGCCTCCTTCATCTGCATCTGTCTCGAGTCTTCA
AGGGCGGCGGTCCACTTTGATGGCGATGGGACATGGGAGTGGGAGTAGTG
GGATGGGAGGGTCAGGGAGAGGTTTTGATTTGCGTTCGATGGCCTCGAGC
GAGGATTACCAGTTGATGGGGAAATCAACATCTCGTCATCCGCTTACCAG
ATGATAGATACGCACAGAGGAGTCATTAATGTAGCCTTGTGTTAATTTTA
TAGCGGTATGAATCGACAGAAACTGAGGTGATATAGTTTTTCTTGTTTCA
GACGGGAGTGGTGTGGGTTGGGAACGGTAAGGGGAGGGTAGGAGGACCGG
GGAGAGGCGTTTGGATGGGCATATATTTTGCAGTCAACATCTGTACATAT
AAAGCAAGTCGAGACTCGAATGAACAGACACTTGGAAAGAAAAATGAAGA
AGCGAGAGGACAG
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Coding sequence (CDS) from alignment at chr21:470887..472999+

>NO21G01590.1 ID=NO21G01590.1|Name=NO21G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr21:470887..472999+ (Nannochloropsis oceanica)
ATGCCCAGGAGGGACCCACATACATTCAGTATACCATCATTACAGCCAGG
CATCGACGATGTTACCACAGCAAAGAGGAGCGGCAGACGCACAACATCAA
TCAGGATGGCTTTTTCGGCATCGAAGCTCGTGATTCTCCTTCTCATCCTC
GTAGCCCAAGCAAAAACTGGGGCGACCGCCGCGAGACTGACGACGACGAC
AAGAAGTTCCGCAGCAGCAGCTTTGACGACGGGTTACGTAGCGCCACCAC
CTCCATCACTGTTCTTTCGCCCTGCCGGACGCTCTCTCCTTCGAGAAATG
CCCGTCGACGACACCTCATCCATTTCTTCCTTGTACTCCGTGTCCTCTTC
TCATGGACTACCATCGCCAATACCACCGATCAACGATGACAATGACGACC
AATACCAAGACGATGACAGCAGCGGGATCGAGATCCGCGGAGGGATGATT
GCAAACTGGCGGAAATCCACTCCCTTGCGCCCTTGCTACGGTTGCACCCC
CGGGGCACCCATGGCTTTTTCTAACCTCTTTTCAGAGTGTTCTTTCGTCA
CCTTGGGGGCACAAATGGGTGTCGCCCCCGTATTCACCAACCTCACACTA
AAAACAAACGACACGGTGTTGGTGCACCTCGTCGGGTCCCGTTTTTTCTT
CCCCGAGGCCAGTGAGTTGTTTTCATTTCTGACTAGTACTTTGGGTGGCA
CTTGCCCGGAAGGTAATCGACTGCAAAATCTTACGTCAGTTTGTACGCTG
GGTGGGCAGGCAGCACCTGTTGGATCTGACGGGCCAGCGTTGTGCACGAT
TTATAGTGTGAATGCTACCAAGGTTCATGGCTTTGGGAAGGAAGGTGTTG
GGGAAGGGAGGGAGGAAGTGCATGTGCAAGCTCATGGATTGTATGGTCCT
GGAGAGTATCGTTTTAATTTTCAAGACTTCAACAACGTGGGATTCCCCTA
TGCTTTTTGGGTTTTACAGTATTTGAATATAGAGGCACCGGGGGAGGGAA
GAAGGGAGAACACGGCAAACGTCACTGTCTCTGGTCAATTTAATAATCAA
CCTCCTCGCGTGCCACCTGCGAGGCTATGGACGGTTACCTTCGTGGTAGC
ATTAGTTGTGTTCGTAGTATTTGCAGCCATATTCAACCCTTGGGTAGGCC
CGCGAGCGATTGACCTTGGGGCAAGAATTCCTTTGGTGAGACGCAATGTC
CTGGAGGAACGACAGACAGGCCCGACGGTACTGCCTCCTTCATCTGCATC
TGTCTCGAGTCTTCAAGGGCGGCGGTCCACTTTGATGGCGATGGGACATG
GGAGTGGGAGTAGTGGGATGGGAGGGTCAGGGAGAGGTTTTGATTTGCGT
TCGATGGCCTCGAGCGAGGATTACCAGTTGATGGGGAAATCAACATCTCG
TCATCCGCTTACCAGATGA
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Synonyms
Publications