NO21G01530, NO21G01530 (gene) Nannochloropsis oceanica

Overview
NameNO21G01530
Unique NameNO21G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length606
Alignment locationchr21:456875..457480 -

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Properties
Property NameValue
Description40s ribosomal protein s15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:456875..457480 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023575Ribosomal_S19_SF
IPR002222Ribosomal_S19
Homology
BLAST of NO21G01530 vs. NCBI_GenBank
Match: EWM22635.1 (40s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 4.300e-75
Identity = 145/157 (92.36%), Postives = 153/157 (97.45%), Query Frame = 0
Query:    1 MADALEGLSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            MAD +EGLS EEIARIAESRKKRSFKKFTFRG+DLDKLLDL PEELLPLFTSR+RRRLQRP+KRKHK L+KKLKNAKKNTGPLEKPAI+KTHLRDL+ITPELIGSIVAIYNGKLFNP+EIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL
Sbjct:   87 MAD-VEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 242          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: ABZ04266.1 (ribosomal protein rps15 [Lineus viridis])

HSP 1 Score: 203.8 bits (517), Expect = 4.100e-49
Identity = 96/144 (66.67%), Postives = 121/144 (84.03%), Query Frame = 0
Query:   14 ARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            A IAE +K+R+F+K+T+RG+DLD+LLD+  E L+ LFT R RRR  R +KRK  AL+K+L+ AKK  GPLEKP ++KTHLRD+II PE+IGSIV +YNGK FN VEIKPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPL
Sbjct:    5 AEIAEKKKRRTFRKYTYRGVDLDQLLDMSSEMLMELFTCRPRRRFSRGLKRKPMALMKRLRKAKKEAGPLEKPEVVKTHLRDMIILPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 148          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: XP_013079862.1 (PREDICTED: 40S ribosomal protein S15 [Biomphalaria glabrata])

HSP 1 Score: 203.4 bits (516), Expect = 5.300e-49
Identity = 96/142 (67.61%), Postives = 121/142 (85.21%), Query Frame = 0
Query:   16 IAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            +AE +KKR+F+KFT+RG+DLD+LLD+  ++L  LF +R RRRL R +KRK  AL+K+L+ AKK  GPLEKP ++KTHLRD+II PE+IGSIV +YNGK FN VEIKPEMVG Y GEFS++Y+PVKHGRPGIG+T+SSRFIPL
Sbjct:    6 LAEKKKKRTFRKFTYRGVDLDQLLDMSMDQLADLFNARQRRRLNRGLKRKPLALMKRLRKAKKEAGPLEKPEVVKTHLRDMIIIPEMIGSIVGVYNGKTFNQVEIKPEMVGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 147          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: XP_005103140.1 (PREDICTED: 40S ribosomal protein S15 [Aplysia californica])

HSP 1 Score: 202.2 bits (513), Expect = 1.200e-48
Identity = 94/142 (66.20%), Postives = 120/142 (84.51%), Query Frame = 0
Query:   16 IAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            +AE +KKR+F+KFT+RG+DLD+LLD+  ++L  +F  R RRRL R +KRK  AL+K+L+ AKK  GPLEKP ++KTHLRD+II PE+IGS+V +YNGK FN VEIKPEMVG Y GEFS++Y+PVKHGRPGIG+T+SSRFIPL
Sbjct:    8 LAEKKKKRTFRKFTYRGVDLDQLLDMSLDQLADMFNCRQRRRLSRGLKRKPLALIKRLRKAKKEAGPLEKPEVVKTHLRDMIIVPEMIGSVVGVYNGKTFNQVEIKPEMVGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 149          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: XP_014778144.1 (PREDICTED: 40S ribosomal protein S15-like [Octopus bimaculoides] >KOF80288.1 hypothetical protein OCBIM_22028162mg [Octopus bimaculoides])

HSP 1 Score: 202.2 bits (513), Expect = 1.200e-48
Identity = 95/146 (65.07%), Postives = 122/146 (83.56%), Query Frame = 0
Query:   12 EIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            +IA + E +KKR+F+K+T+RG+DLD+LLD+  E+L+ LF  R RRR  R +KRK  AL+K+L+ AKK  GPLEKP ++KTHLR++II PE+IGSIV IYNGK FN VEIKPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPL
Sbjct:    6 DIADLIEKKKKRTFRKYTYRGVDLDQLLDMSSEQLMELFHCRARRRFTRGLKRKPMALIKRLRKAKKKAGPLEKPEVVKTHLRNMIIVPEMIGSIVGIYNGKSFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 151          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: XP_003112061.1 (CRE-RPS-15 protein [Caenorhabditis remanei] >EFP12495.1 CRE-RPS-15 protein [Caenorhabditis remanei] >OZF83668.1 hypothetical protein FL82_15655, partial [Caenorhabditis remanei] >OZG20556.1 hypothetical protein FL83_05086, partial [Caenorhabditis latens] >POM36769.1 hypothetical protein FL81_21811 [Caenorhabditis remanei])

HSP 1 Score: 201.1 bits (510), Expect = 2.700e-48
Identity = 93/150 (62.00%), Postives = 123/150 (82.00%), Query Frame = 0
Query:    8 LSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            ++ ++ A +AE +KKR+F+KFT+RG+DLD+LLD+  E+   L  SR+RRRL R +KRKH AL+ K++ AKK  G LEKPA +KTHLRD+II PEL+G ++ IYNGK+FN  EIKPEM+G Y GEF++SY+PVKHGRPGIG+T+SSRFIPL
Sbjct:    1 MATQDDAHLAELKKKRTFRKFTYRGVDLDQLLDMSREQFTKLLPSRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPL 150          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: XP_021351718.1 (40S ribosomal protein S15-like [Mizuhopecten yessoensis])

HSP 1 Score: 200.7 bits (509), Expect = 3.500e-48
Identity = 90/150 (60.00%), Postives = 123/150 (82.00%), Query Frame = 0
Query:    8 LSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            ++ +E   + E +KKR+F+K+TFRG+DLD+LLD+  E+L+ L TSR RRR  R +KRK  AL+K+L+ AKK   PLEKP ++KTHLR++II PE+IGS++ +YNGK FN +E+KPEM+G Y GEFS++Y+PVKHGRPGIG+T+SSRFIPL
Sbjct:    1 MADQETQDLLEKKKKRTFRKYTFRGVDLDQLLDMSSEQLMELLTSRARRRFSRGLKRKPMALIKRLRKAKKEAKPLEKPEVVKTHLRNMIIVPEMIGSVIGVYNGKTFNQIEVKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPL 150          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: GBG34363.1 (30S ribosomal protein S19, chloroplastic [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 199.9 bits (507), Expect = 5.900e-48
Identity = 95/141 (67.38%), Postives = 118/141 (83.69%), Query Frame = 0
Query:   17 AESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            AE +KKR+FKKF++RGIDLDKLLDL  EEL+ +  +R RRR  R +KRK  AL+KKL+ AKK TGP+EKP I+KTHLR++II PE+IGS+V +YNGK F  VEIKPEM+G Y GEFS++Y+P+ HGRPGIG+TNSSRFIPL
Sbjct:   23 AELKKKRTFKKFSYRGIDLDKLLDLTHEELMKMVKARARRRFNRGLKRKPMALIKKLRKAKKETGPMEKPEIVKTHLRNMIIVPEMIGSMVGVYNGKTFTTVEIKPEMIGHYLGEFSITYKPITHGRPGIGATNSSRFIPL 163          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: EGT37974.1 (hypothetical protein CAEBREN_09458 [Caenorhabditis brenneri] >EGT39614.1 hypothetical protein CAEBREN_00931 [Caenorhabditis brenneri])

HSP 1 Score: 199.1 bits (505), Expect = 1.000e-47
Identity = 92/150 (61.33%), Postives = 122/150 (81.33%), Query Frame = 0
Query:    8 LSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            ++ ++ A +AE +KKR+F+KFT+RG+DLD+LLD+  E+   L   R+RRRL R +KRKH AL+ K++ AKK  G LEKPA +KTHLRD+II PEL+G ++ IYNGK+FN  EIKPEM+G Y GEF++SY+PVKHGRPGIG+T+SSRFIPL
Sbjct:    1 MATQDDAHLAELKKKRTFRKFTYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPL 150          
BLAST of NO21G01530 vs. NCBI_GenBank
Match: XP_002639660.1 (C. briggsae CBR-RPS-15 protein [Caenorhabditis briggsae] >CAP31364.1 Protein CBR-RPS-15 [Caenorhabditis briggsae] >PIC51847.1 hypothetical protein B9Z55_002194 [Caenorhabditis nigoni])

HSP 1 Score: 199.1 bits (505), Expect = 1.000e-47
Identity = 92/150 (61.33%), Postives = 122/150 (81.33%), Query Frame = 0
Query:    8 LSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            ++ ++ A +AE +KKR+F+KFT+RG+DLD+LLD+  E+   L   R+RRRL R +KRKH AL+ K++ AKK  G LEKPA +KTHLRD+II PEL+G ++ IYNGK+FN  EIKPEM+G Y GEF++SY+PVKHGRPGIG+T+SSRFIPL
Sbjct:    1 MATQDEAHLAELKKKRTFRKFTYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPL 150          
The following BLAST results are available for this feature:
BLAST of NO21G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22635.14.300e-7592.3640s ribosomal protein s15 [Nannochloropsis gaditan... [more]
ABZ04266.14.100e-4966.67ribosomal protein rps15 [Lineus viridis][more]
XP_013079862.15.300e-4967.61PREDICTED: 40S ribosomal protein S15 [Biomphalaria... [more]
XP_005103140.11.200e-4866.20PREDICTED: 40S ribosomal protein S15 [Aplysia cali... [more]
XP_014778144.11.200e-4865.07PREDICTED: 40S ribosomal protein S15-like [Octopus... [more]
XP_003112061.12.700e-4862.00CRE-RPS-15 protein [Caenorhabditis remanei] >EFP12... [more]
XP_021351718.13.500e-4860.0040S ribosomal protein S15-like [Mizuhopecten yesso... [more]
GBG34363.15.900e-4867.3830S ribosomal protein S19, chloroplastic [Aurantio... [more]
EGT37974.11.000e-4761.33hypothetical protein CAEBREN_09458 [Caenorhabditis... [more]
XP_002639660.11.000e-4761.33C. briggsae CBR-RPS-15 protein [Caenorhabditis bri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004630NSK004630Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01530.1NO21G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602528gene_8112Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g32gene7788Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01530.1NO21G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01530 ID=NO21G01530|Name=NO21G01530|organism=Nannochloropsis oceanica|type=gene|length=606bp
ATGGCTGACGCACTCGAGGGTCTGTCCCCTGAGGAGATTGCCCGCATTGC
GGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTTCCGTGGCATCG
ACCTGGACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCCTGCCACTCTTC
ACCTCCCGTATCCGCCGCCGCCTCCAACGGCCTATTAAGCGCAAGCACAA
GGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAAGAACACGGGCCCCCTGG
AGAAGCCTGCCATCATCAAGACCCACCTTCGTGACTTGATCATCACCCCC
GAGCTGATTGGCTCCATCGTGGCAATCTACAACGGCAAGCTTTTCAACCC
CGTCGAGATCAAGCCCGAGATGGTGGGCATGTACACTGGCGAGTTTTCTA
TGTCTTATCGgtacgtgttgtggcatgtgcgttggttggaaggactgaag
cttaatcaggaaggagatagaagtgcccccgtgcacgattattatatgac
aaaaaggtctcacatttctttgctattcctccaacacagACCCGTGAAGC
ACGGTCGACCCGGCATTGGCTCTACCAATTCCTCCCGTTTTATCCCTCTC
CATTAA
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protein sequence of NO21G01530.1

>NO21G01530.1-protein ID=NO21G01530.1-protein|Name=NO21G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MADALEGLSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLF
TSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITP
ELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTN
SSRFIPLH*
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Synonyms
Publications