NO21G01530.1, NO21G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01530.1
Unique NameNO21G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr21:456875..457480 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:456875..457480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01530.1 vs.
Match: EWM22635.1 (40s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 4.300e-75
Identity = 145/157 (92.36%), Postives = 153/157 (97.45%), Query Frame = 0 
Query:    1 MADALEGLSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLFTSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITPELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 158
            MAD +EGLS EEIARIAESRKKRSFKKFTFRG+DLDKLLDL PEELLPLFTSR+RRRLQRP+KRKHK L+KKLKNAKKNTGPLEKPAI+KTHLRDL+ITPELIGSIVAIYNGKLFNP+EIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL
Sbjct:   87 MAD-VEGLSAEEIARIAESRKKRSFKKFTFRGVDLDKLLDLTPEELLPLFTSRVRRRLQRPLKRKHKTLIKKLKNAKKNTGPLEKPAIVKTHLRDLVITPELIGSIVAIYNGKLFNPIEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTNSSRFIPL 242
The following BLAST results are available for this feature:
BLAST of NO21G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22635.14.300e-7592.3640s ribosomal protein s15 [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01530NO21G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01530.1NO21G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01530.1.cds1NO21G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01530.1.cds2NO21G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01530.1 ID=NO21G01530.1|Name=NO21G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGGCTGACGCACTCGAGGGTCTGTCCCCTGAGGAGATTGCCCGCATTGC
GGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTTCCGTGGCATCG
ACCTGGACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCCTGCCACTCTTC
ACCTCCCGTATCCGCCGCCGCCTCCAACGGCCTATTAAGCGCAAGCACAA
GGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAAGAACACGGGCCCCCTGG
AGAAGCCTGCCATCATCAAGACCCACCTTCGTGACTTGATCATCACCCCC
GAGCTGATTGGCTCCATCGTGGCAATCTACAACGGCAAGCTTTTCAACCC
CGTCGAGATCAAGCCCGAGATGGTGGGCATGTACACTGGCGAGTTTTCTA
TGTCTTATCGACCCGTGAAGCACGGTCGACCCGGCATTGGCTCTACCAAT
TCCTCCCGTTTTATCCCTCTCCATTAA
back to top

protein sequence of NO21G01530.1

>NO21G01530.1-protein ID=NO21G01530.1-protein|Name=NO21G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MADALEGLSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLF
TSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITP
ELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTN
SSRFIPLH*
back to top

mRNA from alignment at chr21:456875..457480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01530.1 ID=NO21G01530.1|Name=NO21G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=606bp|location=Sequence derived from alignment at chr21:456875..457480- (Nannochloropsis oceanica)
ATGGCTGACGCACTCGAGGGTCTGTCCCCTGAGGAGATTGCCCGCATTGC
GGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTTCCGTGGCATCG
ACCTGGACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCCTGCCACTCTTC
ACCTCCCGTATCCGCCGCCGCCTCCAACGGCCTATTAAGCGCAAGCACAA
GGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAAGAACACGGGCCCCCTGG
AGAAGCCTGCCATCATCAAGACCCACCTTCGTGACTTGATCATCACCCCC
GAGCTGATTGGCTCCATCGTGGCAATCTACAACGGCAAGCTTTTCAACCC
CGTCGAGATCAAGCCCGAGATGGTGGGCATGTACACTGGCGAGTTTTCTA
TGTCTTATCGGTACGTGTTGTGGCATGTGCGTTGGTTGGAAGGACTGAAG
CTTAATCAGGAAGGAGATAGAAGTGCCCCCGTGCACGATTATTATATGAC
AAAAAGGTCTCACATTTCTTTGCTATTCCTCCAACACAGACCCGTGAAGC
ACGGTCGACCCGGCATTGGCTCTACCAATTCCTCCCGTTTTATCCCTCTC
CATTAA
back to top

Coding sequence (CDS) from alignment at chr21:456875..457480-

>NO21G01530.1 ID=NO21G01530.1|Name=NO21G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr21:456875..457480- (Nannochloropsis oceanica)
ATGGCTGACGCACTCGAGGGTCTGTCCCCTGAGGAGATTGCCCGCATTGC
GGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTTCCGTGGCATCG
ACCTGGACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCCTGCCACTCTTC
ACCTCCCGTATCCGCCGCCGCCTCCAACGGCCTATTAAGCGCAAGCACAA
GGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAAGAACACGGGCCCCCTGG
AGAAGCCTGCCATCATCAAGACCCACCTTCGTGACTTGATCATCACCCCC
GAGCTGATTGGCTCCATCGTGGCAATCTACAACGGCAAGCTTTTCAACCC
CGTCGAGATCAAGCCCGAGATGGTGGGCATGTACACTGGCGAGTTTTCTA
TGTCTTATCGACCCGTGAAGCACGGTCGACCCGGCATTGGCTCTACCAAT
TCCTCCCGTTTTATCCCTCTCCATTAA
back to top
Synonyms
Publications