NO21G01520, NO21G01520 (gene) Nannochloropsis oceanica

Overview
NameNO21G01520
Unique NameNO21G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr21:455791..456402 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidyl-trna hydrolase mitochondrial-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:455791..456402 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003747translation release factor activity
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
Homology
BLAST of NO21G01520 vs. NCBI_GenBank
Match: EWM22640.1 (peptidyl-trna hydrolase mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 4.700e-58
Identity = 119/165 (72.12%), Postives = 133/165 (80.61%), Query Frame = 0
Query:   39 LIPTVQAAFAPPASSRSFRLTPRCDMPRSGLTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQNRKWDE 204
            ++P+ QA+  P A  R FR+ P C+MPR+G  IPHDRLDFSYS+SSGPGGQNVNKLNTRVELRFHVE A+WIP+ MR R LEQQRHRVNK GE VLSSQEHRTQLKNRE+C+ KLEEAL RAA+VPK RNMR GL EWEKENRLREK         RR+N KWDE
Sbjct:   52 VLPSGQASSLPDA--RQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKXXXXXXXXXRRRNGKWDE 214          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_002290413.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED92165.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 124.4 bits (311), Expect = 4.000e-25
Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = 0
Query:   69 LTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARR 197
            +TIP D++  S+++SSG GGQNVNK+ T+VELRFH++SA WIP  +R RL   + +R+N  G + ++SQE+RTQ++NR+D L KLE+ L  +   PK R MR GL    KENR   KKK S+ K+ RR
Sbjct:    1 ITIPEDQIQTSFARSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENRREMKKKISQKKANRR 128          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_024120766.1 (peptidyl-tRNA hydrolase ICT1, mitochondrial [Oryzias melastigma])

HSP 1 Score: 117.9 bits (294), Expect = 3.800e-23
Identity = 61/131 (46.56%), Postives = 92/131 (70.23%), Query Frame = 0
Query:   71 IPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRN-----MRVGLQEWEKENRLREKKKRSETKSARR 197
            +P +RL  +YS+SSGPGGQ+VNK+NT+ E+RFHV +A+WIP+ +R +++EQ R+R+NKAGEL++SS+  R+Q +N  DCL K+   +A A+  P         +R    +  KE RL++KK  S+TK +RR
Sbjct:   48 VPTERLTVTYSRSSGPGGQHVNKVNTKAEVRFHVHTADWIPEDIRQKVIEQNRNRMNKAGELLVSSELSRSQHRNLSDCLQKISAIIAEASEKPPEPTEEDIALRAARLKKRKEERLKQKKIHSQTKLSRR 178          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_015211436.1 (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X1 [Lepisosteus oculatus])

HSP 1 Score: 117.1 bits (292), Expect = 6.500e-23
Identity = 57/131 (43.51%), Postives = 96/131 (73.28%), Query Frame = 0
Query:   71 IPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPK-----TRNMRVGLQEWEKENRLREKKKRSETKSARR 197
            IP DRL  +YS+SSGPGGQ+VNK+NT+ E+RFHV++A+WIP+ +R +++ + ++R+NK+GEL+++S+  R Q++N  DCL K+ + +A A++ PK      + +R    E  +++RL++KK  S+ K +RR
Sbjct:   77 IPLDRLTVTYSRSSGPGGQHVNKVNTKAEIRFHVQTADWIPEDVRQKIILKNKNRINKSGELIVTSEASRYQMRNLADCLQKIGDIIAEASLKPKEPSEEDKALRKTRLEKMQQDRLKQKKMHSDLKQSRR 207          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_015211437.1 (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X2 [Lepisosteus oculatus])

HSP 1 Score: 117.1 bits (292), Expect = 6.500e-23
Identity = 57/131 (43.51%), Postives = 96/131 (73.28%), Query Frame = 0
Query:   71 IPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPK-----TRNMRVGLQEWEKENRLREKKKRSETKSARR 197
            IP DRL  +YS+SSGPGGQ+VNK+NT+ E+RFHV++A+WIP+ +R +++ + ++R+NK+GEL+++S+  R Q++N  DCL K+ + +A A++ PK      + +R    E  +++RL++KK  S+ K +RR
Sbjct:   72 IPLDRLTVTYSRSSGPGGQHVNKVNTKAEIRFHVQTADWIPEDVRQKIILKNKNRINKSGELIVTSEASRYQMRNLADCLQKIGDIIAEASLKPKEPSEEDKALRKTRLEKMQQDRLKQKKMHSDLKQSRR 202          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_015819230.1 (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Nothobranchius furzeri])

HSP 1 Score: 116.7 bits (291), Expect = 8.400e-23
Identity = 58/134 (43.28%), Postives = 92/134 (68.66%), Query Frame = 0
Query:   67 SGLTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRN-----MRVGLQEWEKENRLREKKKRSETKSAR 196
            +G+ +P DRL  SYS+SSGPGGQ+VNK++T+ E+RFHV +A+WIP  +R ++LE+ ++R+NKAGEL+++S+  R+Q +N  DC+ K+   +A A+  P+        +R    E   + RL+EK+  S TK +R
Sbjct:   56 TGIQVPVDRLTVSYSRSSGPGGQHVNKVSTKAEVRFHVHTADWIPHDVRQKILEKNKNRINKAGELLVTSETSRSQQRNLSDCIQKISSIIAEASEKPREATAEESAVRAARLEKRNKERLKEKRIHSATKHSR 189          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: GAX26754.1 (peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris])

HSP 1 Score: 116.3 bits (290), Expect = 1.100e-22
Identity = 60/129 (46.51%), Postives = 89/129 (68.99%), Query Frame = 0
Query:   69 LTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQ 198
            + IP + LDFS+ +SSG GGQNVNK+N++V++R +V  A WIP  +R RLL+QQ +R++K G L +++QEHRTQ+ NR+  + KL+  L +A   PK R MR G+    KE R   K++RS+ K  R++
Sbjct:   96 IDIPEENLDFSFVRSSGAGGQNVNKVNSQVQVRLNVHEAYWIPYEVRQRLLQQQANRISKEGVLTIAAQEHRTQVANRKAAVQKLQNMLLQAWPRPKERRMRQGISIKTKEQRKEFKRRRSDVKEGRKK 224          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_015759587.1 (PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Acropora digitifera])

HSP 1 Score: 115.9 bits (289), Expect = 1.400e-22
Identity = 61/131 (46.56%), Postives = 95/131 (72.52%), Query Frame = 0
Query:   71 IPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNM--RVGLQEW---EKENRLREKKKRSETKSARR 197
            IP +     Y+KSSGPGGQNVNK+NT+V+LRFHV SAEW+ + +R ++L+++++R+NK GELV+SS ++RTQ KN +D ++K+E  +  A++VPK  ++  +  +Q+    E ENRLR KK  ++ K  R+
Sbjct:   62 IPLESFTIKYAKSSGPGGQNVNKVNTKVDLRFHVASAEWLSEHVRQKILQREKNRINKEGELVISSTKYRTQYKNLKDAVNKVEMIIDEASVVPKETSVEKKAHVQKMINKENENRLRAKKLLADKKRDRK 192          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: GAX25012.1 (peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris])

HSP 1 Score: 115.9 bits (289), Expect = 1.400e-22
Identity = 59/129 (45.74%), Postives = 90/129 (69.77%), Query Frame = 0
Query:   69 LTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQ 198
            + IP + LDFS+ +SSG GGQNVNK+N++V+LR +V  A WIP  +R RL++QQ +R++K G L +++QEHRTQ+ NR+  + KL + L +A   PK R +R G+    KE R   K++RS+ K+ R++
Sbjct:   97 IDIPEENLDFSFVRSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDVKAGRKK 225          
BLAST of NO21G01520 vs. NCBI_GenBank
Match: XP_020914234.1 (peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Exaiptasia pallida] >KXJ22734.1 Peptidyl-tRNA hydrolase ICT1, mitochondrial [Exaiptasia pallida])

HSP 1 Score: 115.5 bits (288), Expect = 1.900e-22
Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = 0
Query:   71 IPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNMRVG-----LQEWEKENRLREKKKRSETKSARRQN 199
            +P DRL   +++SSGPGGQNVNK+NT+VE+RFHVESA+WIP+ +R +LL+++R+RVNK GELVL+S + R+QLKN +D +S+L+  +  A+ VP   + +       L     E RL  KK  S+ K  R+ +
Sbjct:   54 VPQDRLTIKFARSSGPGGQNVNKVNTKVEIRFHVESADWIPEEVREKLLKRERNRVNKNGELVLTSTQFRSQLKNVKDAISRLQTIIKDASFVPAGPSQQQQDHIKILARNFNERRLATKKFASQKKXGRKSD 186          
The following BLAST results are available for this feature:
BLAST of NO21G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22640.14.700e-5872.12peptidyl-trna hydrolase mitochondrial-like protein... [more]
XP_002290413.14.000e-2550.78predicted protein, partial [Thalassiosira pseudona... [more]
XP_024120766.13.800e-2346.56peptidyl-tRNA hydrolase ICT1, mitochondrial [Oryzi... [more]
XP_015211436.16.500e-2343.51PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
XP_015211437.16.500e-2343.51PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
XP_015819230.18.400e-2343.28PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
GAX26754.11.100e-2246.51peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris][more]
XP_015759587.11.400e-2246.56PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochond... [more]
GAX25012.11.400e-2245.74peptidyl-tRNA hydrolase ICT1 [Fistulifera solaris][more]
XP_020914234.11.900e-2247.37peptidyl-tRNA hydrolase ICT1, mitochondrial-like [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL025nonsL025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR060ngnoR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004629NSK004629Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01520.1NO21G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602527gene_8111Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g31gene7787Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01520.1NO21G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01520 ID=NO21G01520|Name=NO21G01520|organism=Nannochloropsis oceanica|type=gene|length=612bp
ATGTCCGCCATCCTGACTACGCTGGCCAGGGCTGGCCTCAGCAGCCTAAC
CACAGCAGTTTCCAGAACAACAACAACAACAACGACAACAAGAGGAGGGT
GGTACGTAGGGGGTCTTATTCCCACCGTCCAAGCAGCTTTTGCCCCTCCC
GCCTCCAGCCGTTCCTTCCGCCTGACCCCTCGCTGCGACATGCCCCGCAG
CGGGCTGACCATTCCCCATGATCGCCTCGACTTCAGCTACTCCAAGTCAT
CGGGCCCGGGTGGACAGAATGTCAATAAACTTAACACACGGGTGGAATTG
CGTTTCCATGTGGAGAGTGCTGAATGGATACCGCAAGGCATGCGCGGGCG
GCTTTTGGAGCAGCAGCGGCATCGAGTCAACAAGGCGGGGGAGCTGGTAC
TATCCTCGCAGGAGCATCGGACACAGCTTAAGAATCGTGAAGATTGCCTA
TCAAAGTTAGAGGAGGCATTGGCTCGGGCGGCGATTGTGCCCAAGACGAG
GAATATGCGAGTTGGATTGCAGGAATGGGAGAAGGAAAACAGGTTGCGGG
AGAAGAAAAAGAGGTCTGAAACGAAGAGCGCGCGGAGGCAGAATAGAAAG
TGGGATGAGTAG
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protein sequence of NO21G01520.1

>NO21G01520.1-protein ID=NO21G01520.1-protein|Name=NO21G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MSAILTTLARAGLSSLTTAVSRTTTTTTTTRGGWYVGGLIPTVQAAFAPP
ASSRSFRLTPRCDMPRSGLTIPHDRLDFSYSKSSGPGGQNVNKLNTRVEL
RFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCL
SKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQNRK
WDE*
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Synonyms
Publications