NO21G01520.1, NO21G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01520.1
Unique NameNO21G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr21:455791..456402 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:455791..456402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01520.1 vs.
Match: EWM22640.1 (peptidyl-trna hydrolase mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 251.1 bits (640), Expect = 2.900e-63
Identity = 137/203 (67.49%), Postives = 158/203 (77.83%), Query Frame = 0 
Query:    3 AILTTLARAGLS-SLTTAVSRTTTTTTTTRGG-WYVGGLIPTVQAAFAPPASSRSFRLTPRCDMPRSGLTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELRFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLSKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQNRKWDE 204
            A+LT+L     S SL +  SR   +  + R   W  G ++P+ QA+  P A  R FR+ P C+MPR+G  IPHDRLDFSYS+SSGPGGQNVNKLNTRVELRFHVE A+WIP+ MR R LEQQRHRVNK GE VLSSQEHRTQLKNRE+C+ KLEEAL RAA+VPK RNMR GL EWEKENRLREKKKRSE K++RR+N KWDE
Sbjct:   14 AVLTSLTVMSFSFSLFSLASRNALSLLSNRSSRWRYGRVLPSGQASSLPDA--RQFRVAPYCEMPRNGFEIPHDRLDFSYSRSSGPGGQNVNKLNTRVELRFHVEDADWIPEDMRHRFLEQQRHRVNKLGEFVLSSQEHRTQLKNREECVRKLEEALTRAAVVPKRRNMRTGLTEWEKENRLREKKKRSEKKASRRRNGKWDE 214
The following BLAST results are available for this feature:
BLAST of NO21G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22640.12.900e-6367.49peptidyl-trna hydrolase mitochondrial-like protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01520NO21G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01520.1NO21G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01520.1.cds1NO21G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01520.1 ID=NO21G01520.1|Name=NO21G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGTCCGCCATCCTGACTACGCTGGCCAGGGCTGGCCTCAGCAGCCTAAC
CACAGCAGTTTCCAGAACAACAACAACAACAACGACAACAAGAGGAGGGT
GGTACGTAGGGGGTCTTATTCCCACCGTCCAAGCAGCTTTTGCCCCTCCC
GCCTCCAGCCGTTCCTTCCGCCTGACCCCTCGCTGCGACATGCCCCGCAG
CGGGCTGACCATTCCCCATGATCGCCTCGACTTCAGCTACTCCAAGTCAT
CGGGCCCGGGTGGACAGAATGTCAATAAACTTAACACACGGGTGGAATTG
CGTTTCCATGTGGAGAGTGCTGAATGGATACCGCAAGGCATGCGCGGGCG
GCTTTTGGAGCAGCAGCGGCATCGAGTCAACAAGGCGGGGGAGCTGGTAC
TATCCTCGCAGGAGCATCGGACACAGCTTAAGAATCGTGAAGATTGCCTA
TCAAAGTTAGAGGAGGCATTGGCTCGGGCGGCGATTGTGCCCAAGACGAG
GAATATGCGAGTTGGATTGCAGGAATGGGAGAAGGAAAACAGGTTGCGGG
AGAAGAAAAAGAGGTCTGAAACGAAGAGCGCGCGGAGGCAGAATAGAAAG
TGGGATGAGTAG
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protein sequence of NO21G01520.1

>NO21G01520.1-protein ID=NO21G01520.1-protein|Name=NO21G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MSAILTTLARAGLSSLTTAVSRTTTTTTTTRGGWYVGGLIPTVQAAFAPP
ASSRSFRLTPRCDMPRSGLTIPHDRLDFSYSKSSGPGGQNVNKLNTRVEL
RFHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCL
SKLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQNRK
WDE*
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mRNA from alignment at chr21:455791..456402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01520.1 ID=NO21G01520.1|Name=NO21G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at chr21:455791..456402+ (Nannochloropsis oceanica)
ATGTCCGCCATCCTGACTACGCTGGCCAGGGCTGGCCTCAGCAGCCTAAC
CACAGCAGTTTCCAGAACAACAACAACAACAACGACAACAAGAGGAGGGT
GGTACGTAGGGGGTCTTATTCCCACCGTCCAAGCAGCTTTTGCCCCTCCC
GCCTCCAGCCGTTCCTTCCGCCTGACCCCTCGCTGCGACATGCCCCGCAG
CGGGCTGACCATTCCCCATGATCGCCTCGACTTCAGCTACTCCAAGTCAT
CGGGCCCGGGTGGACAGAATGTCAATAAACTTAACACACGGGTGGAATTG
CGTTTCCATGTGGAGAGTGCTGAATGGATACCGCAAGGCATGCGCGGGCG
GCTTTTGGAGCAGCAGCGGCATCGAGTCAACAAGGCGGGGGAGCTGGTAC
TATCCTCGCAGGAGCATCGGACACAGCTTAAGAATCGTGAAGATTGCCTA
TCAAAGTTAGAGGAGGCATTGGCTCGGGCGGCGATTGTGCCCAAGACGAG
GAATATGCGAGTTGGATTGCAGGAATGGGAGAAGGAAAACAGGTTGCGGG
AGAAGAAAAAGAGGTCTGAAACGAAGAGCGCGCGGAGGCAGAATAGAAAG
TGGGATGAGTAG
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Coding sequence (CDS) from alignment at chr21:455791..456402+

>NO21G01520.1 ID=NO21G01520.1|Name=NO21G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr21:455791..456402+ (Nannochloropsis oceanica)
ATGTCCGCCATCCTGACTACGCTGGCCAGGGCTGGCCTCAGCAGCCTAAC
CACAGCAGTTTCCAGAACAACAACAACAACAACGACAACAAGAGGAGGGT
GGTACGTAGGGGGTCTTATTCCCACCGTCCAAGCAGCTTTTGCCCCTCCC
GCCTCCAGCCGTTCCTTCCGCCTGACCCCTCGCTGCGACATGCCCCGCAG
CGGGCTGACCATTCCCCATGATCGCCTCGACTTCAGCTACTCCAAGTCAT
CGGGCCCGGGTGGACAGAATGTCAATAAACTTAACACACGGGTGGAATTG
CGTTTCCATGTGGAGAGTGCTGAATGGATACCGCAAGGCATGCGCGGGCG
GCTTTTGGAGCAGCAGCGGCATCGAGTCAACAAGGCGGGGGAGCTGGTAC
TATCCTCGCAGGAGCATCGGACACAGCTTAAGAATCGTGAAGATTGCCTA
TCAAAGTTAGAGGAGGCATTGGCTCGGGCGGCGATTGTGCCCAAGACGAG
GAATATGCGAGTTGGATTGCAGGAATGGGAGAAGGAAAACAGGTTGCGGG
AGAAGAAAAAGAGGTCTGAAACGAAGAGCGCGCGGAGGCAGAATAGAAAG
TGGGATGAGTAG
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Synonyms
Publications