NO21G01340, NO21G01340 (gene) Nannochloropsis oceanica

Overview
NameNO21G01340
Unique NameNO21G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4414
Alignment locationchr21:401167..405580 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:401167..405580 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01340 vs. NCBI_GenBank
Match: EWM22664.1 (hypothetical protein Naga_100023g49 [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 2.200e-40
Identity = 289/1099 (26.30%), Postives = 356/1099 (32.39%), Query Frame = 0 
Query:   68 GKLRPLGDKSK----AEMAMNTSS---DIPGSPVTLKGLPSPLRRTLHSYPSASTILAEHNFSTNSRNGTNSNGSSSSNDIFSRGRHALFGGKQQRLTPAITIPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIRQHGLLQGVITIDRSKGPRLSRHAPLPSFSPRKDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIST--SLRSNTPPLAFLPSARHKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQGARRLLTQFSSASTPSCPRPLQIMRPRSSPVSSANNSPSPPLARARSVGGKTCPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRSLAILPPCPPTVETRQEDGPGLGVREGGKDGRRRRIRRSKIVPVEGDDALSPPLPPSLQIDATSXXXXXXXXXXXXXXXXXPSREI-------------------------------------EEGXXXXXXXXXXXXXXXRLLVEALRQXXXXXXXXXXXXXXXXXXXXXRQLQGERRWGKFKREE--EGGSEAG------TTAVVYPPEVVAVWAKVREGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLLGPAALRARILEDFSVKLPLKEMSLLVQFFSSP-----SLLGTPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQVDYKVVRRFLSQPDLAHVSVRSNSNSSSDISSSIDSMSKTSFSSPPLSVTFPSSLLRVGAAGAAVGGPVAVAIETETEYTGISSFRRSCGLNQGAERGATPADATAXXXXXXXXVRGFGPGRVRRSILQEEAARSEVSHIPGDDLSRELLEKLAEAAAMLDKHSLDEVFQ---------------------------DGNVCSXXXXXXXXXXXXXXRLVSLREFIVLLDEGLHVQVSLTELQLLTEWFRGCPRG--RRREGGRDGERKEGEVLLDFRHFLQQFWALGAAAKR 1079
            GKL+PL D SK    A M++++S+   + P SP+  +GLPSPLRRTL SYPS STILAE +    + N        S+ DIFSRGRHAL GGK    TPA  +                                                          +RQ  LL    T D ++GPRLSRHAPLPSF PR +                                     PP  T  S R +  PLA LPS R +P                                                            P  G+R L         PS   PLQ+ R RSSP  + + +P PPL RA S G K                                                           P S     P  P      +D P L  R   +  R  + RRSK    E D+AL PPLP  LQ+D T               XXX                                            G                LL+EALR+                        +G R  G+ + +E    GS AG           YP E+VAVW KVRE A                                                             +GPAALRARI  DF VKLPLKEMSLLVQ+FS P      LLGT                                          GP VDY +VR FL  P+       +  ++++D   +I S    +  S  LS TF                                                                 GFGPGR+RRSIL EEAAR+E++H+P D  SR+LLE+LAEAAA LD + +D+ FQ                            G                  RLV + +F  L+ +GL V+++ +E+ LL EWF   P G   R E G D +R      LDF HFLQQFWALGAAAKR
Sbjct:   57 GKLKPLRDTSKKMTSATMSLHSSTPDINSPRSPLGSRGLPSPLRRTLRSYPSVSTILAESDEGAKAGN--------SALDIFSRGRHALLGGKSLPTTPAGRV-------------------EASAVPLEMPAGYSTAGPLAGGRVSSTPPSGRGAPQSHPLRQVELLHTAGT-DVARGPRLSRHAPLPSFLPRNE---------------------------------GAGQPPNPTLGSQRGSLTPLASLPS-RPRP-------------------------------------------LPHASPAAMGSTGGNLSPGGGSRCL--------NPS--SPLQVSRTRSSPSRTGSAAPPPPLIRALSAGTK-----------------------GRLHADAPPGPGAEDGVRSPGGGKTVRARGRSEPQVPSSSRPFDPIAPP----DKDCPPLSSRPPPEGPRAGKARRSKSFSGEHDEALLPPLPSPLQMDLTQSISSGVPTCKSSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGDKGHTGCGSDTEKRARTAHKKGLLIEALRELEVGLRETPALD------------EGRRGSGRCEDDEMSRNGSTAGGRQGARAAPAAYPRELVAVWCKVREEAARTEPAEGVPPREDRPRAPKAGGGEGNREELVG----------------------------MGPAALRARISRDFFVKLPLKEMSLLVQYFSDPPNLSSRLLGT------------------SPLFSATGSPSNPEKHQQPQPLQQGPVVDYALVRDFLDLPE----RPPAVDSTATDRGETIPSSEAGNMPSKVLSSTFLPG--------------------------------------------------------------GFGPGRLRRSILHEEAARAELAHVPMDGASRKLLERLAEAAAALDVYKMDDTFQIYHGMSTWGPGTTNLGKSCRDHRRSVAGGAKSGKRSNESSGQSRASERLVLVEDFESLVAKGLRVELTPSEVTLLKEWFLAHPTGPEERAEMGHDRDRAPHR--LDFNHFLQQFWALGAAAKR 887
The following BLAST results are available for this feature:
BLAST of NO21G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
5001000150020002500300035004000Expect = 2.20e-40 / Id = 26.30SequenceEWM22664.1
Match NameE-valueIdentityDescription
EWM22664.12.200e-4026.30hypothetical protein Naga_100023g49 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004647NSK004647Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01340.1NO21G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201512gene_8093Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g49gene7804Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01340.1NO21G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01340 ID=NO21G01340|Name=NO21G01340|organism=Nannochloropsis oceanica|type=gene|length=4414bp
ACAGGAGCAGAGCACTCCTTGGCCCCCGTGGAACTCGCCAGCAACAAAAG
AGCGAAGAAGAGCGCGGGCCCACTGTTTTGACACCATGCAGCAGCAGCAA
TGGCAACACCACCCACGATTTGCGAAACAATAATGCCTCAGCCCAGCGAG
GAGGAAGCCGGCGGAGGCCTGCTGTCACAGCCCCTGTCGGTAGGAGGCGA
CGGGGGCACGACAAAGCTACCTCGCCTGGGGGGAGGAGGGGGAGGAGTAG
GGGGAGCAGGCCATGAGGGGGGGTCTTCACTACTTGCAGGTGTTGGGGGC
GGAAAGCTGCGGCCACTAGGTGACAAATCCAAAGCGGAGATGGCGATGAA
CACCTCCTCTGACATgtaagcaaaattgttcagaaatggcggataaatgg
aaaagatgtgagagaggaggaggaaatccaggagagcgtaaagaatcgtt
ttgtgatgttacacctttcgatcgggtgtgtgttggaggtacctgtatga
ggtagggcagaggaggaagctcttgagcatacgagccaggatgaatccta
cttgtgattagcagattgagggagattgaaagtaaattcaaactgcacgt
tcatcactaatgcctcttccctcatgcacacacacacacatgtaaatagC
CCTGGTTCGCCCGTAACCCTCAAGGGTCTGCCCTCACCTCTCCGACGCAC
CCTCCATTCCTATCCGTCGGCCTCAACCATCCTTGCTGAACACAACTTCA
GCACCAACAGCAGAAACGGTACCAACAGCAACGGCAGCAGCAGCAGCAAT
GACATATTCAGTCGGGGCCGCCACGCGCTCTTTGGGGGAAAGCAGCAACG
TCTAACCCCCGCCATCACTATTCCTCTTCCTCCTGCTGCTGCTAGTGGTG
CGGGGTCTTTTGTGGGGCCACCAACACCACCAAGGACAGCAGCAGCAGCA
GCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCACCTGAAGGTGGAAG
CAGCACCAGCAGCGACCCCTCCAGTCCTCCTCCCCCCCCTGCTGAAATTC
GGCAACACGGCCTCCTGCAAGGTGTCATAACCATCGACCGCTCGAAGGGC
CCCCGCCTCTCACGCCACGCCCCCCTTCCCTCCTTCTCCCCCCGAAAGGA
TGACCTCGCCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGCAGCAGCAGCA
GCAGCGGCAGCAGCAGCAGCAGCAGCAGTATCAGCAGCAGCAGCGTCAAC
AGTGGTGGAATACCACCAATCTCCACCTCTCTTCGTAGTAACACCCCTCC
CCTCGCCTTCCTCCCCTCCGCCCGCCACAAACCCAGGCCCCCTCCCTCAC
CGTCCACTTCCTTCAGCCTCGACTGCTCCAGCAGCCTCACCAGTAACAGT
AGCAGCAACATCAGCAACATCAGCAACAATAAGAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGTAATACCAGCCCACTTCAAGGGGCGCGGCGTTTGCTCACTCAATTC
TCCTCTGCCTCCACACCCTCCTGCCCCCGTCCTCTACAAATTATGCGCCC
TCGAAGCTCACCTGTGAGTTCAGCGAATAACTCTCCTTCCCCCCCTCTTG
CAAGAGCCCGTAGCGTTGGAGGGAAGACGTGTCCCACCAACAGCAGCAGC
AGCAGTAGCAGCAGCAGCAGCAGCATCAATAGCAGCAGTAGCAGTGGTGG
GATGGCTCTTGCAGGGTGTGGGGGTGATTCATCTTTTTCTACGACCTCCT
CCCTTCCCTCCTCCACGTCTTCAGACAAAGAGAAGCAAAAGGAAGAAGCT
CGCCCTCGTTCCCTTGCTATTCTTCCACCTTGTCCACCGACAGTGGAGAC
ACGCCAAGAGGATGGACCCGGGTTGGGGGTCAGAGAGGGAGGGAAAGACG
GACGAAGAAGAAGAATAAGGCGTTCCAAAATCGTCCCTGTCGAGGGAGAC
GATGCCCTCTCTCCGCCTCTTCCACCCTCTTTACAGATTGACGCGACAAG
CTACAGTAGCAGCAGCAGTAGCAGCAGCGGCGGCATCAATATGAATGTTC
AGCCTTCTAGAGAGATAGAAGAAGGGAGGAAGGGAGGAAAGGAGGGAGGG
AAGGAGGTTAACCAGACGGCACGCCTGCTGGTGGAGGCTTTGAGGCAGTT
AGAGCTCGAGCTAGAGGAATCCCAAAAACAAAATCGACCCGAAGAGAAGG
AAGGAGAAGAACGACAACTACAAGGGGAAAGAAGATGGGGGAAATTCAAA
AGAGAAGAAGAGGGAGGAAGCGAAGCAGGAACGACAGCAGTTGTTTACCC
TCCTGAGGTCGTGGCTGTGTGGGCTAAGGTACGAGAGGGAGCCGCGGCGC
AGCAACAGCAACATCAATATCAACATCAACATCAACAAGGGGAAGGCATG
TGGACTGTCGGTAAGGACAACAACAGCAGCATCAACACGAGCAGTAGGCG
GAGCAGGTGCAGCAGCATGCGTGCGGAGGAGGCAGAGGGGGAGGAAGAGA
AAGAGGAGGGGGAAGGGGTACCACTCCTAGGGCCGGCGGCGTTGCGGGCA
AGAATATTAGAAGATTTCTCAGTCAAACTACCATTAAAAGAGATGTCATT
GCTAGTGCAGTTCTTCTCATCTCCGTCCCTTCTTGGCACTCCGTCCTCCT
CCCTGTCCTCTGTGAGCGGCAGTAGCATAAGCAGAAGCAGCAGTAGTAGT
AGCAGCAGCAGCACCACCAGATGGTCTTTGCCTTGCATCAACCACCATCA
GCAGCAGCAGCAGCAAGGCCCCCAAGTTGACTACAAAGTGGTGCGGCGCT
TCTTGTCGCAGCCGGACCTCGCTCATGTCAGCGTCAGAAGTAATAGTAAT
AGCAGCAGTGACATCAGCAGCAGCATTGACAGCATGAGCAAGACCTCGTT
CTCCTCTCCACCACTGTCGGTTACTTTCCCCTCCTCGCTTTTAAGAGTGG
GAGCAGCAGGAGCAGCAGTAGGAGGGCCAGTAGCCGTAGCAATAGAAACG
GAGACGGAATATACGGGCATTTCCTCCTTTCGCCGCAGCTGTGGTTTAAA
TCAAGGAGCAGAAAGAGGAGCCACACCAGCAGACGCAACAGCAGCAACAG
CAGCGACAGTAGCCTCGGTGCGTGGGTTCGGTCCAGGGAGGGTACGTCGC
TCCATTCTACAAGAAGAGGCAGCCCGTTCGGAAGTGTCGCATATCCCTGG
AGATGATCTTTCGAGGGAACTATTGGAAAAACTTGCAGAAGCAGCAGCTA
TGCTGGACAAGCATTCTTTGGATGAGGTGTTTCAGGATGGGAATGTGTGT
AGCAGCAGTAGCAGCAGCAATAGCAGCAGCATTAGTAGTAGCGAGAGACT
GGTTTCCTTGAGAGAATTTATAGTGTTGCTTGACGAAGGGCTGCATGTTC
AGGTCTCGCTTACAGAGCTACAATTACTCACAGAATGGTTCCGTGGTTGT
CCTAGAGGAAGGCGAAGGGAGGGAGGGAGGGATGGCGAGAGGAAAGAGGG
GGAGGTGCTGTTGGATTTTCGTCACTTTTTACAGCAGTTTTGGGCGTTGG
GGGCAGCGGCCAAGAGGAGGAGGAGTAAGGAGGAGGCGCAGGAACGGTTT
CTAAAGGCGCTGACGCGAGGAGAGGGTTTTGTGGGGCTGAAGGTGGGAGA
AGTGGCTGCAGGGAGGGAGGGAAGGCAGGCGGTGGGCATGTCACAAATTG
AGTGCAGATAACCGACCATGAGCAGGGATGATGAGTTCCGAGGCTATCGG
CTCTTTCATCATTGTATCCAGAAAAAAAATCCGAGATCCACGAAACTTAT
TGGTGAGACAGACACACCATCCGTGTGCATCGAATTCAAATAGAGTCCAC
GAATCAAAGAAATAGAAAACGAGAGGAGGAAAGAGGAGACGGACAAAAGA
AACTCAGCAGCAAAGAAGAAACAGGATGGGCACTTGCAAATTTGAATCTA
TCAATGTACCTTGATGTACAAGTTTGATGAAGAGGAAGGAATAGATATAC
ATCAAAACGAAATAAAGGGTGAGGAGGGAGCACGGGAGAGGGTCACAACT
GAAGTTAAAGCCCGAAGGTATTTTAATATTTTAGATAAGGTGAGATGACT
GCATGTGCATGAGATGACAAGGAACGATGAAATTAATACACCAGCACACT
CGCCGGAGGGAAAAGAAGATGTGAAGGAGATATGTGAGGAAATTTGAATT
GGTGAGAAGATATTCACGGGCTGTGCGCCACATGTAGAGAGAATGAATTA
GGAGATAAAGAAATAACAATACTCAGACCACGTTCATAAAAGTGTATGTC
ATTAAAATCGACCCGAGCCAAAATAAAGAAATCAAATGTTGAGCCAAGCA
TTCCCTAATCTAGA
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protein sequence of NO21G01340.1

>NO21G01340.1-protein ID=NO21G01340.1-protein|Name=NO21G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1126bp
MATPPTICETIMPQPSEEEAGGGLLSQPLSVGGDGGTTKLPRLGGGGGGV
GGAGHEGGSSLLAGVGGGKLRPLGDKSKAEMAMNTSSDIPGSPVTLKGLP
SPLRRTLHSYPSASTILAEHNFSTNSRNGTNSNGSSSSNDIFSRGRHALF
GGKQQRLTPAITIPLPPAAASGAGSFVGPPTPPRTAAAAATATATAAAAA
APEGGSSTSSDPSSPPPPPAEIRQHGLLQGVITIDRSKGPRLSRHAPLPS
FSPRKDDLASSSSSSSSSSSSSSSGSSSSSSSISSSSVNSGGIPPISTSL
RSNTPPLAFLPSARHKPRPPPSPSTSFSLDCSSSLTSNSSSNISNISNNK
SSSSSSSSSSSSSSSSSSSSSSSGNTSPLQGARRLLTQFSSASTPSCPRP
LQIMRPRSSPVSSANNSPSPPLARARSVGGKTCPTNSSSSSSSSSSSINS
SSSSGGMALAGCGGDSSFSTTSSLPSSTSSDKEKQKEEARPRSLAILPPC
PPTVETRQEDGPGLGVREGGKDGRRRRIRRSKIVPVEGDDALSPPLPPSL
QIDATSYSSSSSSSSGGINMNVQPSREIEEGRKGGKEGGKEVNQTARLLV
EALRQLELELEESQKQNRPEEKEGEERQLQGERRWGKFKREEEGGSEAGT
TAVVYPPEVVAVWAKVREGAAAQQQQHQYQHQHQQGEGMWTVGKDNNSSI
NTSSRRSRCSSMRAEEAEGEEEKEEGEGVPLLGPAALRARILEDFSVKLP
LKEMSLLVQFFSSPSLLGTPSSSLSSVSGSSISRSSSSSSSSSTTRWSLP
CINHHQQQQQQGPQVDYKVVRRFLSQPDLAHVSVRSNSNSSSDISSSIDS
MSKTSFSSPPLSVTFPSSLLRVGAAGAAVGGPVAVAIETETEYTGISSFR
RSCGLNQGAERGATPADATAATAATVASVRGFGPGRVRRSILQEEAARSE
VSHIPGDDLSRELLEKLAEAAAMLDKHSLDEVFQDGNVCSSSSSSNSSSI
SSSERLVSLREFIVLLDEGLHVQVSLTELQLLTEWFRGCPRGRRREGGRD
GERKEGEVLLDFRHFLQQFWALGAAAKRRRSKEEAQERFLKALTRGEGFV
GLKVGEVAAGREGRQAVGMSQIECR*
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Synonyms
Publications