Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:401167..405580 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01340.1 vs.
Match: EWM22664.1 (hypothetical protein Naga_100023g49 [Nannochloropsis gaditana])
HSP 1 Score: 126.3 bits (316), Expect = 5.900e-25
Identity = 85/177 (48.02%), Postives = 105/177 (59.32%), Query Frame = 0
Query: 931 GFGPGRVRRSILQEEAARSEVSHIPGDDLSRELLEKLAEAAAMLDKHSLDEVFQD--------------GNVC-----------SSSSSSNSSSISS--SERLVSLREFIVLLDEGLHVQVSLTELQLLTEWFRGCPRG--RRREGGRDGERKEGEVLLDFRHFLQQFWALGAAAKR 1079
GFGPGR+RRSIL EEAAR+E++H+P D SR+LLE+LAEAAA LD + +D+ FQ G C S SN SS S SERLV + +F L+ +GL V+++ +E+ LL EWF P G R E G D +R LDF HFLQQFWALGAAAKR
Sbjct: 713 GFGPGRLRRSILHEEAARAELAHVPMDGASRKLLERLAEAAAALDVYKMDDTFQIYHGMSTWGPGTTNLGKSCRDHRRSVAGGAKSGKRSNESSGQSRASERLVLVEDFESLVAKGLRVELTPSEVTLLKEWFLAHPTGPEERAEMGHDRDRAPHR--LDFNHFLQQFWALGAAAKR 887
The following BLAST results are available for this feature:
BLAST of NO21G01340.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 5.90e-25 / Id = 48.02 Sequence EWM22664.1
Match Name E-value Identity Description
EWM22664.1 5.900e-25 48.02 hypothetical protein Naga_100023g49 [Nannochlorops... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01340.1 ID=NO21G01340.1|Name=NO21G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=4130bp back to top protein sequence of NO21G01340.1
>NO21G01340.1-protein ID=NO21G01340.1-protein|Name=NO21G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1126bp back to top mRNA from alignment at chr21:401167..405580+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01340.1 ID=NO21G01340.1|Name=NO21G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=4414bp|location=Sequence derived from alignment at chr21:401167..405580+ (Nannochloropsis oceanica)A
TGGCAACACCACCCACGATTTGCGAAACAATAATGCCTCAGCCCAGCGAG
GAGGAAGCCGGCGGAGGCCTGCTGTCACAGCCCCTGTCGGTAGGAGGCGA
CGGGGGCACGACAAAGCTACCTCGCCTGGGGGGAGGAGGGGGAGGAGTAG
GGGGAGCAGGCCATGAGGGGGGGTCTTCACTACTTGCAGGTGTTGGGGGC
GGAAAGCTGCGGCCACTAGGTGACAAATCCAAAGCGGAGATGGCGATGAA
CACCTCCTCTGACAT GTAAGCAAAATTGTTCAGAAATGGCGGATAAATGG
AAAAGATGTGAGAGAGGAGGAGGAAATCCAGGAGAGCGTAAAGAATCGTT
TTGTGATGTTACACCTTTCGATCGGGTGTGTGTTGGAGGTACCTGTATGA
GGTAGGGCAGAGGAGGAAGCTCTTGAGCATACGAGCCAGGATGAATCCTA
CTTGTGATTAGCAGATTGAGGGAGATTGAAAGTAAATTCAAACTGCACGT
TCATCACTAATGCCTCTTCCCTCATGCACACACACACACATGTAAATAGC
CCTGGTTCGCCCGTAACCCTCAAGGGTCTGCCCTCACCTCTCCGACGCAC
CCTCCATTCCTATCCGTCGGCCTCAACCATCCTTGCTGAACACAACTTCA
GCACCAACAGCAGAAACGGTACCAACAGCAACGGCAGCAGCAGCAGCAAT
GACATATTCAGTCGGGGCCGCCACGCGCTCTTTGGGGGAAAGCAGCAACG
TCTAACCCCCGCCATCACTATTCCTCTTCCTCCTGCTGCTGCTAGTGGTG
CGGGGTCTTTTGTGGGGCCACCAACACCACCAAGGACAGCAGCAGCAGCA
GCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCACCTGAAGGTGGAAG
CAGCACCAGCAGCGACCCCTCCAGTCCTCCTCCCCCCCCTGCTGAAATTC
GGCAACACGGCCTCCTGCAAGGTGTCATAACCATCGACCGCTCGAAGGGC
CCCCGCCTCTCACGCCACGCCCCCCTTCCCTCCTTCTCCCCCCGAAAGGA
TGACCTCGCCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGCAGCAGCAGCA
GCAGCGGCAGCAGCAGCAGCAGCAGCAGTATCAGCAGCAGCAGCGTCAAC
AGTGGTGGAATACCACCAATCTCCACCTCTCTTCGTAGTAACACCCCTCC
CCTCGCCTTCCTCCCCTCCGCCCGCCACAAACCCAGGCCCCCTCCCTCAC
CGTCCACTTCCTTCAGCCTCGACTGCTCCAGCAGCCTCACCAGTAACAGT
AGCAGCAACATCAGCAACATCAGCAACAATAAGAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGTAATACCAGCCCACTTCAAGGGGCGCGGCGTTTGCTCACTCAATTC
TCCTCTGCCTCCACACCCTCCTGCCCCCGTCCTCTACAAATTATGCGCCC
TCGAAGCTCACCTGTGAGTTCAGCGAATAACTCTCCTTCCCCCCCTCTTG
CAAGAGCCCGTAGCGTTGGAGGGAAGACGTGTCCCACCAACAGCAGCAGC
AGCAGTAGCAGCAGCAGCAGCAGCATCAATAGCAGCAGTAGCAGTGGTGG
GATGGCTCTTGCAGGGTGTGGGGGTGATTCATCTTTTTCTACGACCTCCT
CCCTTCCCTCCTCCACGTCTTCAGACAAAGAGAAGCAAAAGGAAGAAGCT
CGCCCTCGTTCCCTTGCTATTCTTCCACCTTGTCCACCGACAGTGGAGAC
ACGCCAAGAGGATGGACCCGGGTTGGGGGTCAGAGAGGGAGGGAAAGACG
GACGAAGAAGAAGAATAAGGCGTTCCAAAATCGTCCCTGTCGAGGGAGAC
GATGCCCTCTCTCCGCCTCTTCCACCCTCTTTACAGATTGACGCGACAAG
CTACAGTAGCAGCAGCAGTAGCAGCAGCGGCGGCATCAATATGAATGTTC
AGCCTTCTAGAGAGATAGAAGAAGGGAGGAAGGGAGGAAAGGAGGGAGGG
AAGGAGGTTAACCAGACGGCACGCCTGCTGGTGGAGGCTTTGAGGCAGTT
AGAGCTCGAGCTAGAGGAATCCCAAAAACAAAATCGACCCGAAGAGAAGG
AAGGAGAAGAACGACAACTACAAGGGGAAAGAAGATGGGGGAAATTCAAA
AGAGAAGAAGAGGGAGGAAGCGAAGCAGGAACGACAGCAGTTGTTTACCC
TCCTGAGGTCGTGGCTGTGTGGGCTAAGGTACGAGAGGGAGCCGCGGCGC
AGCAACAGCAACATCAATATCAACATCAACATCAACAAGGGGAAGGCATG
TGGACTGTCGGTAAGGACAACAACAGCAGCATCAACACGAGCAGTAGGCG
GAGCAGGTGCAGCAGCATGCGTGCGGAGGAGGCAGAGGGGGAGGAAGAGA
AAGAGGAGGGGGAAGGGGTACCACTCCTAGGGCCGGCGGCGTTGCGGGCA
AGAATATTAGAAGATTTCTCAGTCAAACTACCATTAAAAGAGATGTCATT
GCTAGTGCAGTTCTTCTCATCTCCGTCCCTTCTTGGCACTCCGTCCTCCT
CCCTGTCCTCTGTGAGCGGCAGTAGCATAAGCAGAAGCAGCAGTAGTAGT
AGCAGCAGCAGCACCACCAGATGGTCTTTGCCTTGCATCAACCACCATCA
GCAGCAGCAGCAGCAAGGCCCCCAAGTTGACTACAAAGTGGTGCGGCGCT
TCTTGTCGCAGCCGGACCTCGCTCATGTCAGCGTCAGAAGTAATAGTAAT
AGCAGCAGTGACATCAGCAGCAGCATTGACAGCATGAGCAAGACCTCGTT
CTCCTCTCCACCACTGTCGGTTACTTTCCCCTCCTCGCTTTTAAGAGTGG
GAGCAGCAGGAGCAGCAGTAGGAGGGCCAGTAGCCGTAGCAATAGAAACG
GAGACGGAATATACGGGCATTTCCTCCTTTCGCCGCAGCTGTGGTTTAAA
TCAAGGAGCAGAAAGAGGAGCCACACCAGCAGACGCAACAGCAGCAACAG
CAGCGACAGTAGCCTCGGTGCGTGGGTTCGGTCCAGGGAGGGTACGTCGC
TCCATTCTACAAGAAGAGGCAGCCCGTTCGGAAGTGTCGCATATCCCTGG
AGATGATCTTTCGAGGGAACTATTGGAAAAACTTGCAGAAGCAGCAGCTA
TGCTGGACAAGCATTCTTTGGATGAGGTGTTTCAGGATGGGAATGTGTGT
AGCAGCAGTAGCAGCAGCAATAGCAGCAGCATTAGTAGTAGCGAGAGACT
GGTTTCCTTGAGAGAATTTATAGTGTTGCTTGACGAAGGGCTGCATGTTC
AGGTCTCGCTTACAGAGCTACAATTACTCACAGAATGGTTCCGTGGTTGT
CCTAGAGGAAGGCGAAGGGAGGGAGGGAGGGATGGCGAGAGGAAAGAGGG
GGAGGTGCTGTTGGATTTTCGTCACTTTTTACAGCAGTTTTGGGCGTTGG
GGGCAGCGGCCAAGAGGAGGAGGAGTAAGGAGGAGGCGCAGGAACGGTTT
CTAAAGGCGCTGACGCGAGGAGAGGGTTTTGTGGGGCTGAAGGTGGGAGA
AGTGGCTGCAGGGAGGGAGGGAAGGCAGGCGGTGGGCATGTCACAAATTG
AGTGCAGATAA back to top Coding sequence (CDS) from alignment at chr21:401167..405580+
>NO21G01340.1 ID=NO21G01340.1|Name=NO21G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=3378bp|location=Sequence derived from alignment at chr21:401167..405580+ (Nannochloropsis oceanica) back to top