NO21G01330, NO21G01330 (gene) Nannochloropsis oceanica

Overview
NameNO21G01330
Unique NameNO21G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2309
Alignment locationchr21:398882..401190 -

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Properties
Property NameValue
DescriptionU1 small nuclear ribonucleoprotein 70
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:398882..401190 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO21G01330 vs. NCBI_GenBank
Match: EWM22649.1 (u1 small nuclear ribonucleoprotein 70 [Nannochloropsis gaditana])

HSP 1 Score: 224.2 bits (570), Expect = 5.200e-55
Identity = 107/121 (88.43%), Postives = 117/121 (96.69%), Query Frame = 0
Query:    1 MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGL 122
            MKVHAEKVE+E EDWDPKKD+KATEDPY+TLMVARLS+DTTEKKLRREFEQYGPI+S+R+VMD +GKPRGYAFIEFE+E DMK AYKRADGKKIDGRR+LVDVERGRTVKGWVPRRLGGGL
Sbjct:   61 MKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGL 181          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_019619727.1 (PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa-like [Branchiostoma belcheri])

HSP 1 Score: 177.6 bits (449), Expect = 5.500e-41
Identity = 93/149 (62.42%), Postives = 112/149 (75.17%), Query Frame = 0
Query:    1 MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSRG 149
            ++ HA ++E +  +WDP  D  A+ D Y+TL VAR+++DT+E KLRREFE YGPI S+++  D   GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG  E N       S RE+ +RG
Sbjct:   75 LEAHANRLEEKVSEWDPANDPNASGDAYKTLFVARINYDTSESKLRREFEVYGPIRSIKMTKDVNTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRKGGPEVNVKH----SGREDPTRG 219          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: EXX75768.1 (Snp1p [Rhizophagus irregularis DAOM 197198w] >EXX75769.1 Snp1p [Rhizophagus irregularis DAOM 197198w] >PKC15925.1 RNA-binding domain-containing protein [Rhizophagus irregularis] >PKC68881.1 RNA-binding domain-containing protein [Rhizophagus irregularis] >PKY19989.1 RNA-binding domain-containing protein [Rhizophagus irregularis] >POG63692.1 hypothetical protein GLOIN_2v1484465 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 174.1 bits (440), Expect = 6.100e-40
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0
Query:   13 EDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVV-MDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEEN 133
            E+WDP KD+  T DP++TL VAR+SFD TEK LRREFE YGPIE++R+V    +GKPRGYAF+EFE+E DMK AYK ADG K+ GRR+LVDVERGRTVKGW PRRLGGGLGGTR G  E+N
Sbjct:   84 EEWDPNKDENVTGDPFKTLFVARMSFDITEKDLRREFEMYGPIENIRIVKRKDDGKPRGYAFVEFEREKDMKAAYKDADGVKLLGRRILVDVERGRTVKGWRPRRLGGGLGGTRIGGPEQN 204          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: GBC16085.1 (U1 small nuclear ribonucleoprotein 70kDa [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 174.1 bits (440), Expect = 6.100e-40
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0
Query:   13 EDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVV-MDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEEN 133
            E+WDP KD+  T DP++TL VAR+SFD TEK LRREFE YGPIE++R+V    +GKPRGYAF+EFE+E DMK AYK ADG K+ GRR+LVDVERGRTVKGW PRRLGGGLGGTR G  E+N
Sbjct:   84 EEWDPNKDENVTGDPFKTLFVARMSFDITEKDLRREFEMYGPIENIRIVKRKDDGKPRGYAFVEFEREKDMKAAYKDADGVKLLGRRILVDVERGRTVKGWRPRRLGGGLGGTRIGGPEQN 204          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: PKY50857.1 (RNA-binding domain-containing protein [Rhizophagus irregularis])

HSP 1 Score: 174.1 bits (440), Expect = 6.100e-40
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0
Query:   13 EDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVV-MDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEEN 133
            E+WDP KD+  T DP++TL VAR+SFD TEK LRREFE YGPIE++R+V    +GKPRGYAF+EFE+E DMK AYK ADG K+ GRR+LVDVERGRTVKGW PRRLGGGLGGTR G  E+N
Sbjct:   84 EEWDPNKDENVTGDPFKTLFVARMSFDITEKDLRREFEMYGPIENIRIVKRKDDGKPRGYAFVEFEREKDMKAAYKDADGVKLLGRRILVDVERGRTVKGWRPRRLGGGLGGTRIGGPEQN 204          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_021353396.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Mizuhopecten yessoensis] >OWF50588.1 U1 small nuclear ribonucleoprotein 70 kDa [Mizuhopecten yessoensis])

HSP 1 Score: 172.9 bits (437), Expect = 1.400e-39
Identity = 93/144 (64.58%), Postives = 109/144 (75.69%), Query Frame = 0
Query:    5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDG-EGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSR 148
            A K+E +   WDP  +  +T DPY++L VAR++FDT+E KLRREFE YGPI  + ++ D   GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG  +ENT  S     RE+ SR
Sbjct:   78 AYKLEQDLALWDPSNNPGSTGDPYKSLFVARINFDTSESKLRREFEVYGPIRKICMLTDKVSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWQPRRLGGGLGGTRKGGPDENTRFSGRDEYREDGSR 221          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_023342083.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Eurytemora affinis])

HSP 1 Score: 171.8 bits (434), Expect = 3.000e-39
Identity = 89/141 (63.12%), Postives = 107/141 (75.89%), Query Frame = 0
Query:    5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREE 145
            A K+E E   WDP   K  TEDP++TL +AR+++ T+E K+RREFE YG I+S+R+V +  +GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW+PRRLGGGLGGTRKG  + N   S     R E
Sbjct:   79 AYKLEQEIALWDPNSGKDTTEDPFKTLFIARVNYYTSESKMRREFETYGTIKSIRIVQNVKDGKPRGYAFIEYESERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWLPRRLGGGLGGTRKGGSDVNVRHSGRDDGRRE 219          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_011413610.1 (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like isoform X2 [Crassostrea gigas])

HSP 1 Score: 171.0 bits (432), Expect = 5.200e-39
Identity = 89/130 (68.46%), Postives = 101/130 (77.69%), Query Frame = 0
Query:    5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENT 134
            A K+E +   WDP     AT DPY+TL VAR+++D++E KLRREFE YG I  + +V D   GKPRGYAFIEFE E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG  +ENT
Sbjct:   78 AYKLEQDLALWDPSNAASATGDPYKTLFVARINYDSSESKLRREFEVYGSIRKISLVSDKTSGKPRGYAFIEFEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRKGGPDENT 207          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_023293342.1 (U1 small nuclear ribonucleoprotein 70 kDa [Lucilia cuprina] >KNC22224.1 U1 small nuclear ribonucleoprotein 70 kDa [Lucilia cuprina])

HSP 1 Score: 171.0 bits (432), Expect = 5.200e-39
Identity = 88/133 (66.17%), Postives = 106/133 (79.70%), Query Frame = 0
Query:    5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDGE-GKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRS 137
            A K+E E   WDP++ K ATEDP+RTL VAR+++DT+E KLRREFE YGPI+ + ++ D E GKP+GYAFIE+E E DM  AYK ADGKKIDG+RVLVDVER RTVKGW+PRRLGGGLGGTR+G  + N   S
Sbjct:   78 AYKLEREIALWDPQEIKNATEDPFRTLFVARINYDTSESKLRREFEIYGPIKKIVMITDPETGKPKGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHS 210          
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_013095967.1 (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Biomphalaria glabrata])

HSP 1 Score: 171.0 bits (432), Expect = 5.200e-39
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 0
Query:    5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSRG 149
            A K+E +   WDP  +  +T DP++TL VAR++FDT+E KLRREFE +GP++ + ++ D   GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG  +ENT      S R+E S G
Sbjct:   78 AYKLEQDLALWDPSSNPNSTMDPFKTLFVARINFDTSESKLRREFEVFGPVKKICLINDRNSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRKGGPDENT----RFSGRDEFSTG 218          
The following BLAST results are available for this feature:
BLAST of NO21G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22649.15.200e-5588.43u1 small nuclear ribonucleoprotein 70 [Nannochloro... [more]
XP_019619727.15.500e-4162.42PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear r... [more]
EXX75768.16.100e-4071.07Snp1p [Rhizophagus irregularis DAOM 197198w] >EXX7... [more]
GBC16085.16.100e-4071.07U1 small nuclear ribonucleoprotein 70kDa [Rhizopha... [more]
PKY50857.16.100e-4071.07RNA-binding domain-containing protein [Rhizophagus... [more]
XP_021353396.11.400e-3964.58U1 small nuclear ribonucleoprotein 70 kDa-like [Mi... [more]
XP_023342083.13.000e-3963.12U1 small nuclear ribonucleoprotein 70 kDa-like [Eu... [more]
XP_011413610.15.200e-3968.46PREDICTED: U1 small nuclear ribonucleoprotein 70 k... [more]
XP_023293342.15.200e-3966.17U1 small nuclear ribonucleoprotein 70 kDa [Lucilia... [more]
XP_013095967.15.200e-3962.76PREDICTED: U1 small nuclear ribonucleoprotein 70 k... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004648NSK004648Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01330.1NO21G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602455gene_8092Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g50gene7805Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01330.1NO21G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01330 ID=NO21G01330|Name=NO21G01330|organism=Nannochloropsis oceanica|type=gene|length=2309bp
GGCCAAGGAGTGCTCTGCTCCTGTGAGAAGGAGGGGAAGAAAGGGGACGG
TGAGGTGAGCTCTCGAGGAGTCCATATTTCTTACATGTGCCTTGATACGG
CCGACAATGACAGGAAGAGAAGGGCTGCAGTGGTTGTAAAGCCAGAGTCA
GGTTCCCTTGTCCGTTTGGTGCCAATTTGTGCTTCGCCCCACGGGTTCTA
GCGCGCGAAGAGGGTGGGGATGGGTGGGAGAGAATGACGGCCAGAGGCAC
CCGCAGTCTGTTTTTCGCAGCTAAAGAAGAAATGCGGCGGGTGCATGAGG
GTAGATGAACGATTGCTTTCACAGTTGCCAAGGGGATGGAATGGCCGAGT
AGCACTGGCTTTTGCAGTCAAGGAATGATGCGGAGGGGAGGCCAACGCGA
GGGCTTGTCTATCACACGACCCGAACATCTCACGCTCCCCTCCACAACCC
GCAACCCCCAGGTCTTGGCCTTCCCTTCACAATCCCTCCTTCTTTCCCGT
AACAAGCAGCAGCAGGAAGCGCAGCATGTACGGCGGTGGCGGTGGTTTCG
GTGGCGGGCGAGGGTCTGGTGGTCCGGGAGGAGGAGGCGACTTCGGGGGC
GGTGGCGGGCGGGGCCGAGGCGGAGGGATGCGGTTGGTCACGCCGAAGGG
GCAAATGTCGGGAAGCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAA
gtaagtgttagacgtgttttgtgttgcactttgatgctacgcttgtgtat
atagaggaagaaggagagagagtgagcggaggagagaagagcggcaggcc
gaacagaaagagtgtgagaaggattgctgcagtatgtctggcatgtagat
gtatgttaagtaggctacgacaatgagcgcacgtgactgattgggatggt
caacagagaagctcgtgtgcggatggatacacttccaggtgctttgctcc
gtctttttatttccccctccttccctactgctcgaccccaaccccgtagc
tcaccgtcccctccctctctcttactttatacctacgtagACATGCGCGC
CATGTTTGAGCCTCGTCCACCTGTTGAATTCAACCGTCTCTCCACCAAGC
CCCCTCCCCAACCATACACGGGCATCAGTCAATACGTCGGCCTCTTCGAG
ACAGCCCCCCCCCCCCCCGCGAGAAATACATTTCCTATGCCGAACGAAAA
GCCGCCGAAAGAGCAGCTTTGATGAAGGTCCACGCGGAGAAGGTCGAGTT
GGAGAAAGAGGATTGGGACCCGAAGAAGGATAAGAAAGCCACTGAGGATC
CATACAGGACATTGATGGTTGCTAGGTTATCATTTGACACGACTGAGAAG
AAATTACGCAGAGAATTTGAGCAGTATGGCCCGATTGAGAGCCTTAGAGT
GGTGATGGATGGTGAGGGCAAGCCAAGAGGGTATGCCTTTATTGAGTTCG
AAAAGGAGGGGGACATGAAGAATGCATATAAGCGCGCGGATGGGAAGAAG
ATTGACGGGAGGCGGGTCCTGGTTGATGTGGAGAGGGGGAGGACGGTGAA
GGGATGGGTGCCTCGGAGGCTTGGTGGTGGCTTGGGCGGGACGAGAAAGG
GCCCCGGGGAGGAGAACACGGGACGAAGCGCAGGAGGGAGTGCGCGGGAG
GAGATGAGCCGGGGAGGAGGGAGCGGAAGAGGACGAAGTCGCAGTCCAGA
GAGGCGGATGGACAGGGAGAGTCGTGATCGGGGTCATCGTGGGGATAGAG
GAGATAGGGGGGGGATAGAGACAGAGGTGACAGGGGGCGGCGCTCTCGCA
GTCGATCGCCTCCGCGTGGACGAAGGGATGATCGTGGCTGGGACCGTGAC
CGAGGAGATAGGAGGGATAGAGGGGATAAGCGGAGGCGAAGCCGTAGCAG
TGATAATCGATACGGGCCTGCAAGTGATGGCGATAGCCGATATGGGCCCA
GTGGAGGAGATAAACGAAGGCGGTAGCTTTGAGAGGTGTGCGTGTCTAGT
GGTGGTGGTGGTTGGGTGTGGGAGGGGGGGAAAGCAAATGAATCAAGACT
TTGGCAGCTAAAAAGAAAAAGAGAGGAAAGGCATGGGGAAAGAATCTGAG
GAGTGGAGAGGAGAGGAGTCGAGAAGAAGAAAAAACATCAAGAACCGAGT
TGTACGGCAGGGGATGCGTGCTGTTGTCCAACCTCCTTCCAAGCAATACC
GTTGCGTTGGGCCGTTTCGAGATGTTCGTCGTTGAGAGTTAGTTCCACGC
TGTGCCTCCACCTCTCCCACGCACGCTCACATCACTCATCATCACCGTCA
TTCGTACGA
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protein sequence of NO21G01330.1

>NO21G01330.1-protein ID=NO21G01330.1-protein|Name=NO21G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFE
QYGPIESLRVVMDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVL
VDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSRGGG
SGRGRSRSPERRMDRESRDRGHRGDRGDRGGIETEVTGGGALAVDRLRVD
EGMIVAGTVTEEIGGIEGISGGEAVAVIIDTGLQVMAIADMGPVEEINEG
GSFERCACLVVVVVGCGRGGKQMNQDFGS*
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Synonyms
Publications