NO21G01330, NO21G01330 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G01330 vs. NCBI_GenBank
Match: EWM22649.1 (u1 small nuclear ribonucleoprotein 70 [Nannochloropsis gaditana]) HSP 1 Score: 224.2 bits (570), Expect = 5.200e-55 Identity = 107/121 (88.43%), Postives = 117/121 (96.69%), Query Frame = 0 Query: 1 MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGL 122 MKVHAEKVE+E EDWDPKKD+KATEDPY+TLMVARLS+DTTEKKLRREFEQYGPI+S+R+VMD +GKPRGYAFIEFE+E DMK AYKRADGKKIDGRR+LVDVERGRTVKGWVPRRLGGGL Sbjct: 61 MKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGL 181
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_019619727.1 (PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa-like [Branchiostoma belcheri]) HSP 1 Score: 177.6 bits (449), Expect = 5.500e-41 Identity = 93/149 (62.42%), Postives = 112/149 (75.17%), Query Frame = 0 Query: 1 MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSRG 149 ++ HA ++E + +WDP D A+ D Y+TL VAR+++DT+E KLRREFE YGPI S+++ D GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG E N S RE+ +RG Sbjct: 75 LEAHANRLEEKVSEWDPANDPNASGDAYKTLFVARINYDTSESKLRREFEVYGPIRSIKMTKDVNTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRKGGPEVNVKH----SGREDPTRG 219
BLAST of NO21G01330 vs. NCBI_GenBank
Match: EXX75768.1 (Snp1p [Rhizophagus irregularis DAOM 197198w] >EXX75769.1 Snp1p [Rhizophagus irregularis DAOM 197198w] >PKC15925.1 RNA-binding domain-containing protein [Rhizophagus irregularis] >PKC68881.1 RNA-binding domain-containing protein [Rhizophagus irregularis] >PKY19989.1 RNA-binding domain-containing protein [Rhizophagus irregularis] >POG63692.1 hypothetical protein GLOIN_2v1484465 [Rhizophagus irregularis DAOM 181602=DAOM 197198]) HSP 1 Score: 174.1 bits (440), Expect = 6.100e-40 Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0 Query: 13 EDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVV-MDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEEN 133 E+WDP KD+ T DP++TL VAR+SFD TEK LRREFE YGPIE++R+V +GKPRGYAF+EFE+E DMK AYK ADG K+ GRR+LVDVERGRTVKGW PRRLGGGLGGTR G E+N Sbjct: 84 EEWDPNKDENVTGDPFKTLFVARMSFDITEKDLRREFEMYGPIENIRIVKRKDDGKPRGYAFVEFEREKDMKAAYKDADGVKLLGRRILVDVERGRTVKGWRPRRLGGGLGGTRIGGPEQN 204
BLAST of NO21G01330 vs. NCBI_GenBank
Match: GBC16085.1 (U1 small nuclear ribonucleoprotein 70kDa [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 174.1 bits (440), Expect = 6.100e-40 Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0 Query: 13 EDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVV-MDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEEN 133 E+WDP KD+ T DP++TL VAR+SFD TEK LRREFE YGPIE++R+V +GKPRGYAF+EFE+E DMK AYK ADG K+ GRR+LVDVERGRTVKGW PRRLGGGLGGTR G E+N Sbjct: 84 EEWDPNKDENVTGDPFKTLFVARMSFDITEKDLRREFEMYGPIENIRIVKRKDDGKPRGYAFVEFEREKDMKAAYKDADGVKLLGRRILVDVERGRTVKGWRPRRLGGGLGGTRIGGPEQN 204
BLAST of NO21G01330 vs. NCBI_GenBank
Match: PKY50857.1 (RNA-binding domain-containing protein [Rhizophagus irregularis]) HSP 1 Score: 174.1 bits (440), Expect = 6.100e-40 Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 0 Query: 13 EDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVV-MDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEEN 133 E+WDP KD+ T DP++TL VAR+SFD TEK LRREFE YGPIE++R+V +GKPRGYAF+EFE+E DMK AYK ADG K+ GRR+LVDVERGRTVKGW PRRLGGGLGGTR G E+N Sbjct: 84 EEWDPNKDENVTGDPFKTLFVARMSFDITEKDLRREFEMYGPIENIRIVKRKDDGKPRGYAFVEFEREKDMKAAYKDADGVKLLGRRILVDVERGRTVKGWRPRRLGGGLGGTRIGGPEQN 204
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_021353396.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Mizuhopecten yessoensis] >OWF50588.1 U1 small nuclear ribonucleoprotein 70 kDa [Mizuhopecten yessoensis]) HSP 1 Score: 172.9 bits (437), Expect = 1.400e-39 Identity = 93/144 (64.58%), Postives = 109/144 (75.69%), Query Frame = 0 Query: 5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDG-EGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSR 148 A K+E + WDP + +T DPY++L VAR++FDT+E KLRREFE YGPI + ++ D GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG +ENT S RE+ SR Sbjct: 78 AYKLEQDLALWDPSNNPGSTGDPYKSLFVARINFDTSESKLRREFEVYGPIRKICMLTDKVSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWQPRRLGGGLGGTRKGGPDENTRFSGRDEYREDGSR 221
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_023342083.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Eurytemora affinis]) HSP 1 Score: 171.8 bits (434), Expect = 3.000e-39 Identity = 89/141 (63.12%), Postives = 107/141 (75.89%), Query Frame = 0 Query: 5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREE 145 A K+E E WDP K TEDP++TL +AR+++ T+E K+RREFE YG I+S+R+V + +GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW+PRRLGGGLGGTRKG + N S R E Sbjct: 79 AYKLEQEIALWDPNSGKDTTEDPFKTLFIARVNYYTSESKMRREFETYGTIKSIRIVQNVKDGKPRGYAFIEYESERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWLPRRLGGGLGGTRKGGSDVNVRHSGRDDGRRE 219
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_011413610.1 (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like isoform X2 [Crassostrea gigas]) HSP 1 Score: 171.0 bits (432), Expect = 5.200e-39 Identity = 89/130 (68.46%), Postives = 101/130 (77.69%), Query Frame = 0 Query: 5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENT 134 A K+E + WDP AT DPY+TL VAR+++D++E KLRREFE YG I + +V D GKPRGYAFIEFE E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG +ENT Sbjct: 78 AYKLEQDLALWDPSNAASATGDPYKTLFVARINYDSSESKLRREFEVYGSIRKISLVSDKTSGKPRGYAFIEFEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRKGGPDENT 207
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_023293342.1 (U1 small nuclear ribonucleoprotein 70 kDa [Lucilia cuprina] >KNC22224.1 U1 small nuclear ribonucleoprotein 70 kDa [Lucilia cuprina]) HSP 1 Score: 171.0 bits (432), Expect = 5.200e-39 Identity = 88/133 (66.17%), Postives = 106/133 (79.70%), Query Frame = 0 Query: 5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDGE-GKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRS 137 A K+E E WDP++ K ATEDP+RTL VAR+++DT+E KLRREFE YGPI+ + ++ D E GKP+GYAFIE+E E DM AYK ADGKKIDG+RVLVDVER RTVKGW+PRRLGGGLGGTR+G + N S Sbjct: 78 AYKLEREIALWDPQEIKNATEDPFRTLFVARINYDTSESKLRREFEIYGPIKKIVMITDPETGKPKGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHS 210
BLAST of NO21G01330 vs. NCBI_GenBank
Match: XP_013095967.1 (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Biomphalaria glabrata]) HSP 1 Score: 171.0 bits (432), Expect = 5.200e-39 Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 0 Query: 5 AEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMD-GEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSRG 149 A K+E + WDP + +T DP++TL VAR++FDT+E KLRREFE +GP++ + ++ D GKPRGYAFIE+E E DM +AYK ADGKKIDGRRVLVDVERGRTVKGW PRRLGGGLGGTRKG +ENT S R+E S G Sbjct: 78 AYKLEQDLALWDPSSNPNSTMDPFKTLFVARINFDTSESKLRREFEVFGPVKKICLINDRNSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRKGGPDENT----RFSGRDEFSTG 218 The following BLAST results are available for this feature:
BLAST of NO21G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G01330 ID=NO21G01330|Name=NO21G01330|organism=Nannochloropsis oceanica|type=gene|length=2309bpback to top protein sequence of NO21G01330.1 >NO21G01330.1-protein ID=NO21G01330.1-protein|Name=NO21G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bpback to top Synonyms
Publications
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