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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:398882..401190 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01330.1 vs.
Match: EWM22649.1 (u1 small nuclear ribonucleoprotein 70 [Nannochloropsis gaditana]) HSP 1 Score: 274.2 bits (700), Expect = 4.300e-70 Identity = 153/193 (79.27%), Postives = 164/193 (84.97%), Query Frame = 0
Query: 1 MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSA----------REEMSRGGG-SGRGRSRSPERRMDRE-SRDRG----HRGDRG 178
MKVHAEKVE+E EDWDPKKD+KATEDPY+TLMVARLS+DTTEKKLRREFEQYGPI+S+R+VMD +GKPRGYAFIEFE+E DMK AYKRADGKKIDGRR+LVDVERGRTVKGWVPRRLGGGLGGTRKGP +E TGR AGG A REE SRGGG S R RSRSP RR DRE SRDRG HRGDRG
Sbjct: 61 MKVHAEKVEMEVEDWDPKKDEKATEDPYKTLMVARLSYDTTEKKLRREFEQYGPIQSMRLVMDADGKPRGYAFIEFERESDMKMAYKRADGKKIDGRRILVDVERGRTVKGWVPRRLGGGLGGTRKGPEDETTGRGAGGGAGGGAGGGAVVREESSRGGGESYRARSRSPGRRADRERSRDRGGGDRHRGDRG 253
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01330.1 ID=NO21G01330.1|Name=NO21G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp
GGCCAAGGAGTGCTCTGCTCCTGTGAGAAGGAGGGGAAGAAAGGGGACGG
TGAGGTGAGCTCTCGAGGAGTCCATATTTCTTACATGTGCCTTGATACGG
CCGACAATGACAGGAAGAGAAGGGCTGCAGTGGTTGTAAAGCCAGAGTCA
GGTTCCCTTGTCCGTTTGGTGCCAATTTGTGCTTCGCCCCACGGGTTCTA
GCGCGCGAAGAGGGTGGGGATGGGTGGGAGAGAATGACGGCCAGAGGCAC
CCGCAGTCTGTTTTTCGCAGCTAAAGAAGAAATGCGGCGGGTGCATGAGG
GTAGATGAACGATTGCTTTCACAGTTGCCAAGGGGATGGAATGGCCGAGT
AGCACTGGCTTTTGCAGTCAAGGAATGATGCGGAGGGGAGGCCAACGCGA
GGGCTTGTCTATCACACGACCCGAACATCTCACGCTCCCCTCCACAACCC
GCAACCCCCAGGTCTTGGCCTTCCCTTCACAATCCCTCCTTCTTTCCCGT
AACAAGCAGCAGCAGGAAGCGCAGCATGTACGGCGGTGGCGGTGGTTTCG
GTGGCGGGCGAGGGTCTGGTGGTCCGGGAGGAGGAGGCGACTTCGGGGGC
GGTGGCGGGCGGGGCCGAGGCGGAGGGATGCGGTTGGTCACGCCGAAGGG
GCAAATGTCGGGAAGCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAA
ACATGCGCGCCATGTTTGAGCCTCGTCCACCTGTTGAATTCAACCGTCTC
TCCACCAAGCCCCCTCCCCAACCATACACGGGCATCAGTCAATACGTCGG
CCTCTTCGAGACAGCCCCCCCCCCCCCCGCGAGAAATACATTTCCTATGC
CGAACGAAAAGCCGCCGAAAGAGCAGCTTTGATGAAGGTCCACGCGGAGA
AGGTCGAGTTGGAGAAAGAGGATTGGGACCCGAAGAAGGATAAGAAAGCC
ACTGAGGATCCATACAGGACATTGATGGTTGCTAGGTTATCATTTGACAC
GACTGAGAAGAAATTACGCAGAGAATTTGAGCAGTATGGCCCGATTGAGA
GCCTTAGAGTGGTGATGGATGGTGAGGGCAAGCCAAGAGGGTATGCCTTT
ATTGAGTTCGAAAAGGAGGGGGACATGAAGAATGCATATAAGCGCGCGGA
TGGGAAGAAGATTGACGGGAGGCGGGTCCTGGTTGATGTGGAGAGGGGGA
GGACGGTGAAGGGATGGGTGCCTCGGAGGCTTGGTGGTGGCTTGGGCGGG
ACGAGAAAGGGCCCCGGGGAGGAGAACACGGGACGAAGCGCAGGAGGGAG
TGCGCGGGAGGAGATGAGCCGGGGAGGAGGGAGCGGAAGAGGACGAAGTC
GCAGTCCAGAGAGGCGGATGGACAGGGAGAGTCGTGATCGGGGTCATCGT
GGGGATAGAGGAGATAGGGGGGGGATAGAGACAGAGGTGACAGGGGGCGG
CGCTCTCGCAGTCGATCGCCTCCGCGTGGACGAAGGGATGATCGTGGCTG
GGACCGTGACCGAGGAGATAGGAGGGATAGAGGGGATAAGCGGAGGCGAA
GCCGTAGCAGTGATAATCGATACGGGCCTGCAAGTGATGGCGATAGCCGA
TATGGGCCCAGTGGAGGAGATAAACGAAGGCGGTAGCTTTGAGAGGTGTG
CGTGTCTAGTGGTGGTGGTGGTTGGGTGTGGGAGGGGGGGAAAGCAAATG
AATCAAGACTTTGGCAGCTAAAAAGAAAAAGAGAGGAAAGGCATGGGGAA
AGAATCTGAGGAGTGGAGAGGAGAGGAGTCGAGAAGAAGAAAAAACATCA
AGAACCGAGTTGTACGGCAGGGGATGCGTGCTGTTGTCCAACCTCCTTCC
AAGCAATACCGTTGCGTTGGGCCGTTTCGAGATGTTCGTCGTTGAGAGTT
AGTTCCACGCTGTGCCTCCACCTCTCCCACGCACGCTCACATCACTCATC
ATCACCGTCATTCGTACGA back to topprotein sequence of NO21G01330.1 >NO21G01330.1-protein ID=NO21G01330.1-protein|Name=NO21G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MKVHAEKVELEKEDWDPKKDKKATEDPYRTLMVARLSFDTTEKKLRREFE
QYGPIESLRVVMDGEGKPRGYAFIEFEKEGDMKNAYKRADGKKIDGRRVL
VDVERGRTVKGWVPRRLGGGLGGTRKGPGEENTGRSAGGSAREEMSRGGG
SGRGRSRSPERRMDRESRDRGHRGDRGDRGGIETEVTGGGALAVDRLRVD
EGMIVAGTVTEEIGGIEGISGGEAVAVIIDTGLQVMAIADMGPVEEINEG
GSFERCACLVVVVVGCGRGGKQMNQDFGS* back to topmRNA from alignment at chr21:398882..401190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01330.1 ID=NO21G01330.1|Name=NO21G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2309bp|location=Sequence derived from alignment at chr21:398882..401190- (Nannochloropsis oceanica)
GGCCAAGGAGTGCTCTGCTCCTGTGAGAAGGAGGGGAAGAAAGGGGACGG
TGAGGTGAGCTCTCGAGGAGTCCATATTTCTTACATGTGCCTTGATACGG
CCGACAATGACAGGAAGAGAAGGGCTGCAGTGGTTGTAAAGCCAGAGTCA
GGTTCCCTTGTCCGTTTGGTGCCAATTTGTGCTTCGCCCCACGGGTTCTA
GCGCGCGAAGAGGGTGGGGATGGGTGGGAGAGAATGACGGCCAGAGGCAC
CCGCAGTCTGTTTTTCGCAGCTAAAGAAGAAATGCGGCGGGTGCATGAGG
GTAGATGAACGATTGCTTTCACAGTTGCCAAGGGGATGGAATGGCCGAGT
AGCACTGGCTTTTGCAGTCAAGGAATGATGCGGAGGGGAGGCCAACGCGA
GGGCTTGTCTATCACACGACCCGAACATCTCACGCTCCCCTCCACAACCC
GCAACCCCCAGGTCTTGGCCTTCCCTTCACAATCCCTCCTTCTTTCCCGT
AACAAGCAGCAGCAGGAAGCGCAGCATGTACGGCGGTGGCGGTGGTTTCG
GTGGCGGGCGAGGGTCTGGTGGTCCGGGAGGAGGAGGCGACTTCGGGGGC
GGTGGCGGGCGGGGCCGAGGCGGAGGGATGCGGTTGGTCACGCCGAAGGG
GCAAATGTCGGGAAGCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAA
GTAAGTGTTAGACGTGTTTTGTGTTGCACTTTGATGCTACGCTTGTGTAT
ATAGAGGAAGAAGGAGAGAGAGTGAGCGGAGGAGAGAAGAGCGGCAGGCC
GAACAGAAAGAGTGTGAGAAGGATTGCTGCAGTATGTCTGGCATGTAGAT
GTATGTTAAGTAGGCTACGACAATGAGCGCACGTGACTGATTGGGATGGT
CAACAGAGAAGCTCGTGTGCGGATGGATACACTTCCAGGTGCTTTGCTCC
GTCTTTTTATTTCCCCCTCCTTCCCTACTGCTCGACCCCAACCCCGTAGC
TCACCGTCCCCTCCCTCTCTCTTACTTTATACCTACGTAGACATGCGCGC
CATGTTTGAGCCTCGTCCACCTGTTGAATTCAACCGTCTCTCCACCAAGC
CCCCTCCCCAACCATACACGGGCATCAGTCAATACGTCGGCCTCTTCGAG
ACAGCCCCCCCCCCCCCCGCGAGAAATACATTTCCTATGCCGAACGAAAA
GCCGCCGAAAGAGCAGCTTTGATGAAGGTCCACGCGGAGAAGGTCGAGTT
GGAGAAAGAGGATTGGGACCCGAAGAAGGATAAGAAAGCCACTGAGGATC
CATACAGGACATTGATGGTTGCTAGGTTATCATTTGACACGACTGAGAAG
AAATTACGCAGAGAATTTGAGCAGTATGGCCCGATTGAGAGCCTTAGAGT
GGTGATGGATGGTGAGGGCAAGCCAAGAGGGTATGCCTTTATTGAGTTCG
AAAAGGAGGGGGACATGAAGAATGCATATAAGCGCGCGGATGGGAAGAAG
ATTGACGGGAGGCGGGTCCTGGTTGATGTGGAGAGGGGGAGGACGGTGAA
GGGATGGGTGCCTCGGAGGCTTGGTGGTGGCTTGGGCGGGACGAGAAAGG
GCCCCGGGGAGGAGAACACGGGACGAAGCGCAGGAGGGAGTGCGCGGGAG
GAGATGAGCCGGGGAGGAGGGAGCGGAAGAGGACGAAGTCGCAGTCCAGA
GAGGCGGATGGACAGGGAGAGTCGTGATCGGGGTCATCGTGGGGATAGAG
GAGATAGGGGGGGGATAGAGACAGAGGTGACAGGGGGCGGCGCTCTCGCA
GTCGATCGCCTCCGCGTGGACGAAGGGATGATCGTGGCTGGGACCGTGAC
CGAGGAGATAGGAGGGATAGAGGGGATAAGCGGAGGCGAAGCCGTAGCAG
TGATAATCGATACGGGCCTGCAAGTGATGGCGATAGCCGATATGGGCCCA
GTGGAGGAGATAAACGAAGGCGGTAGCTTTGAGAGGTGTGCGTGTCTAGT
GGTGGTGGTGGTTGGGTGTGGGAGGGGGGGAAAGCAAATGAATCAAGACT
TTGGCAGCTAAAAAGAAAAAGAGAGGAAAGGCATGGGGAAAGAATCTGAG
GAGTGGAGAGGAGAGGAGTCGAGAAGAAGAAAAAACATCAAGAACCGAGT
TGTACGGCAGGGGATGCGTGCTGTTGTCCAACCTCCTTCCAAGCAATACC
GTTGCGTTGGGCCGTTTCGAGATGTTCGTCGTTGAGAGTTAGTTCCACGC
TGTGCCTCCACCTCTCCCACGCACGCTCACATCACTCATCATCACCGTCA
TTCGTACGA back to topCoding sequence (CDS) from alignment at chr21:398882..401190- >NO21G01330.1 ID=NO21G01330.1|Name=NO21G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at chr21:398882..401190- (Nannochloropsis oceanica)
ATGAAGGTCCACGCGGAGAAGGTCGAGTTGGAGAAAGAGGATTGGGACCC
GAAGAAGGATAAGAAAGCCACTGAGGATCCATACAGGACATTGATGGTTG
CTAGGTTATCATTTGACACGACTGAGAAGAAATTACGCAGAGAATTTGAG
CAGTATGGCCCGATTGAGAGCCTTAGAGTGGTGATGGATGGTGAGGGCAA
GCCAAGAGGGTATGCCTTTATTGAGTTCGAAAAGGAGGGGGACATGAAGA
ATGCATATAAGCGCGCGGATGGGAAGAAGATTGACGGGAGGCGGGTCCTG
GTTGATGTGGAGAGGGGGAGGACGGTGAAGGGATGGGTGCCTCGGAGGCT
TGGTGGTGGCTTGGGCGGGACGAGAAAGGGCCCCGGGGAGGAGAACACGG
GACGAAGCGCAGGAGGGAGTGCGCGGGAGGAGATGAGCCGGGGAGGAGGG
AGCGGAAGAGGACGAAGTCGCAGTCCAGAGAGGCGGATGGACAGGGAGAG
TCGTGATCGGGGTCATCGTGGGGATAGAGGAGATAGGGGGGGGATAGAGA
CAGAGGTGACAGGGGGCGGCGCTCTCGCAGTCGATCGCCTCCGCGTGGAC
GAAGGGATGATCGTGGCTGGGACCGTGACCGAGGAGATAGGAGGGATAGA
GGGGATAAGCGGAGGCGAAGCCGTAGCAGTGATAATCGATACGGGCCTGC
AAGTGATGGCGATAGCCGATATGGGCCCAGTGGAGGAGATAAACGAAGGC
GGTAGCTTTGAGAGGTGTGCGTGTCTAGTGGTGGTGGTGGTTGGGTGTGG
GAGGGGGGGAAAGCAAATGAATCAAGACTTTGGCAGCTAA back to top
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