NO21G01280, NO21G01280 (gene) Nannochloropsis oceanica

Overview
NameNO21G01280
Unique NameNO21G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr21:388857..390380 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:388857..390380 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR000225Armadillo
Homology
The following BLAST results are available for this feature:
BLAST of NO21G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01280.1NO21G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01280.1NO21G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01280 ID=NO21G01280|Name=NO21G01280|organism=Nannochloropsis oceanica|type=gene|length=1524bp
CACAAGATCATGGACGATCCGGACACGGAAGCGGCGGAGATGTCGTCTTC
TACAGCCTCGACGGCCACTCCCTCTTGCACCAACTGCGAGACATACTTGC
AAGGAGACTTCTCCAACGGGTACGCCCAGCGGGTCAGCCCGTCCAACCTC
ATCCTCTTCCACGTCTGCAAACTCCGCACGGGCACCAAGAAGGAGAAGCA
TGAGGCGTGCATCCAGCTAGGCAAGTATGCCGCCACTTCAGCTGACTTGA
GAGGCCAAGTTCTGGCTGCCGGGGGGCTGGCCTCGTTGATTCAAGTCCGG
CCCGACGTGCAATTGGCGTCGGCTAAGGCCATCGCCCATGCCATCTTGGG
TGTAGACGATGCGTGGGTTTTGTTGAGATTTTCACGGGGCATTCTGGATG
CGTTGCGCCTGTTGCTAGTAACGAGCAAGGAGGCCCGAGAGGCAAAGCAG
CAGGAGGAGCTGTTGTTGCAGCAGGGCGAGCAGGAGCAAAAGCAGGAGCT
AGATGAGCCAAAGCCAACTTCAGCACCTGAAACGGAGGAAATGCAAAGAG
TGGATGAGACCAGTCCTTGTCATTACAGGCATTTGGTTGCACGTGTACTG
GCGCACATGATCGTTATAATCAAGCAGGAATGGAGGCACGCATCCGGAGA
TGCCCCTCCAACCTCGGAGAGGTTTTTGGCCTGGACGACGAGCAAGACAA
AGAGCTCCTCGACCATAACTGATAGCTTGGGGAGGGTGGTGGAACTTGCA
ATGATGCTGGCAGAGGATGACTGTGGTCGGACAATCACCTCGGGGGGACG
AAGAGGGCAAGGAAACGGAGGAGCAGGAGGAGGAGGAGGAGGAGCCTGTC
CTAAGTCGTCCTCGTCATTTCGAGCGCAACAACAGCAGTTGCAGGGCAGT
AGTGCCTTTCTTGCTTCTTCCCTGCAGATGGATCCTTCCGATCGTGATGC
TACTATTCTAACGGCGTTTTCTCTCGCGCAGACTGCACATGTAGAAGCTA
GCCGTGTCCTGCTTGTCAACCGCGGACTCCTCCCCCTCCTCGAGGAATGG
CTTACCTCAAACGTCAAGGATATAGAACGCCAAGCCGTTTCTATCGTCGC
TTCACTCTGTGCCCGGCCCCATGACGACGAAAAAAGCTGTGGCACCAACA
ACAGCAGCAGCAGCAGTAACAGTTCCGGAGTTGGTTCCCTCGACATATAC
ACACGAGGCTTCATCGACGCCAAAATTCTGGCATCCAATATTTTACCTCA
CCTTCTTCCTCTTGCGTCTAGTAATGAAGTCGAAATTAGAGGGCATGTGG
CGGAGGCCCTGGCTGACCTGTCGAGGCAAGCACAGAACCGATCAGCGCTG
GTTAGGACAGGAGGAATCTCTTCCTTGGTCTTGTTGTTGGGGGATGCAGC
GGGCGAACTGAATGCTCAAGCTGAGGTGGCGGAGCATGCCTTGACGGCTC
TGAATAACCTTGCGATGGACCACCAGGAAGCAGGGGGGGGGGTGGAGGAG
GGGGAGGGATGGGGGGAGGGTTGA
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protein sequence of NO21G01280.1

>NO21G01280.1-protein ID=NO21G01280.1-protein|Name=NO21G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MDDPDTEAAEMSSSTASTATPSCTNCETYLQGDFSNGYAQRVSPSNLILF
HVCKLRTGTKKEKHEACIQLGKYAATSADLRGQVLAAGGLASLIQVRPDV
QLASAKAIAHAILGVDDAWVLLRFSRGILDALRLLLVTSKEAREAKQQEE
LLLQQGEQEQKQELDEPKPTSAPETEEMQRVDETSPCHYRHLVARVLAHM
IVIIKQEWRHASGDAPPTSERFLAWTTSKTKSSSTITDSLGRVVELAMML
AEDDCGRTITSGGRRGQGNGGAGGGGGGACPKSSSSFRAQQQQLQGSSAF
LASSLQMDPSDRDATILTAFSLAQTAHVEASRVLLVNRGLLPLLEEWLTS
NVKDIERQAVSIVASLCARPHDDEKSCGTNNSSSSSNSSGVGSLDIYTRG
FIDAKILASNILPHLLPLASSNEVEIRGHVAEALADLSRQAQNRSALVRT
GGISSLVLLLGDAAGELNAQAEVAEHALTALNNLAMDHQEAGGGVEEGEG
WGEG*
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Synonyms
Publications