NO21G01280.1, NO21G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01280.1
Unique NameNO21G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr21:388857..390380 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:388857..390380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO21G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Position :
0
Zoom :
x 1
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01280NO21G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01280.1NO21G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01280.1.cds1NO21G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01280.1 ID=NO21G01280.1|Name=NO21G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
CACAAGATCATGGACGATCCGGACACGGAAGCGGCGGAGATGTCGTCTTC
TACAGCCTCGACGGCCACTCCCTCTTGCACCAACTGCGAGACATACTTGC
AAGGAGACTTCTCCAACGGGTACGCCCAGCGGGTCAGCCCGTCCAACCTC
ATCCTCTTCCACGTCTGCAAACTCCGCACGGGCACCAAGAAGGAGAAGCA
TGAGGCGTGCATCCAGCTAGGCAAGTATGCCGCCACTTCAGCTGACTTGA
GAGGCCAAGTTCTGGCTGCCGGGGGGCTGGCCTCGTTGATTCAAGTCCGG
CCCGACGTGCAATTGGCGTCGGCTAAGGCCATCGCCCATGCCATCTTGGG
TGTAGACGATGCGTGGGTTTTGTTGAGATTTTCACGGGGCATTCTGGATG
CGTTGCGCCTGTTGCTAGTAACGAGCAAGGAGGCCCGAGAGGCAAAGCAG
CAGGAGGAGCTGTTGTTGCAGCAGGGCGAGCAGGAGCAAAAGCAGGAGCT
AGATGAGCCAAAGCCAACTTCAGCACCTGAAACGGAGGAAATGCAAAGAG
TGGATGAGACCAGTCCTTGTCATTACAGGCATTTGGTTGCACGTGTACTG
GCGCACATGATCGTTATAATCAAGCAGGAATGGAGGCACGCATCCGGAGA
TGCCCCTCCAACCTCGGAGAGGTTTTTGGCCTGGACGACGAGCAAGACAA
AGAGCTCCTCGACCATAACTGATAGCTTGGGGAGGGTGGTGGAACTTGCA
ATGATGCTGGCAGAGGATGACTGTGGTCGGACAATCACCTCGGGGGGACG
AAGAGGGCAAGGAAACGGAGGAGCAGGAGGAGGAGGAGGAGGAGCCTGTC
CTAAGTCGTCCTCGTCATTTCGAGCGCAACAACAGCAGTTGCAGGGCAGT
AGTGCCTTTCTTGCTTCTTCCCTGCAGATGGATCCTTCCGATCGTGATGC
TACTATTCTAACGGCGTTTTCTCTCGCGCAGACTGCACATGTAGAAGCTA
GCCGTGTCCTGCTTGTCAACCGCGGACTCCTCCCCCTCCTCGAGGAATGG
CTTACCTCAAACGTCAAGGATATAGAACGCCAAGCCGTTTCTATCGTCGC
TTCACTCTGTGCCCGGCCCCATGACGACGAAAAAAGCTGTGGCACCAACA
ACAGCAGCAGCAGCAGTAACAGTTCCGGAGTTGGTTCCCTCGACATATAC
ACACGAGGCTTCATCGACGCCAAAATTCTGGCATCCAATATTTTACCTCA
CCTTCTTCCTCTTGCGTCTAGTAATGAAGTCGAAATTAGAGGGCATGTGG
CGGAGGCCCTGGCTGACCTGTCGAGGCAAGCACAGAACCGATCAGCGCTG
GTTAGGACAGGAGGAATCTCTTCCTTGGTCTTGTTGTTGGGGGATGCAGC
GGGCGAACTGAATGCTCAAGCTGAGGTGGCGGAGCATGCCTTGACGGCTC
TGAATAACCTTGCGATGGACCACCAGGAAGCAGGGGGGGGGGTGGAGGAG
GGGGAGGGATGGGGGGAGGGTTGA
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protein sequence of NO21G01280.1

>NO21G01280.1-protein ID=NO21G01280.1-protein|Name=NO21G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MDDPDTEAAEMSSSTASTATPSCTNCETYLQGDFSNGYAQRVSPSNLILF
HVCKLRTGTKKEKHEACIQLGKYAATSADLRGQVLAAGGLASLIQVRPDV
QLASAKAIAHAILGVDDAWVLLRFSRGILDALRLLLVTSKEAREAKQQEE
LLLQQGEQEQKQELDEPKPTSAPETEEMQRVDETSPCHYRHLVARVLAHM
IVIIKQEWRHASGDAPPTSERFLAWTTSKTKSSSTITDSLGRVVELAMML
AEDDCGRTITSGGRRGQGNGGAGGGGGGACPKSSSSFRAQQQQLQGSSAF
LASSLQMDPSDRDATILTAFSLAQTAHVEASRVLLVNRGLLPLLEEWLTS
NVKDIERQAVSIVASLCARPHDDEKSCGTNNSSSSSNSSGVGSLDIYTRG
FIDAKILASNILPHLLPLASSNEVEIRGHVAEALADLSRQAQNRSALVRT
GGISSLVLLLGDAAGELNAQAEVAEHALTALNNLAMDHQEAGGGVEEGEG
WGEG*
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mRNA from alignment at chr21:388857..390380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01280.1 ID=NO21G01280.1|Name=NO21G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at chr21:388857..390380- (Nannochloropsis oceanica)
CACAAGATCATGGACGATCCGGACACGGAAGCGGCGGAGATGTCGTCTTC
TACAGCCTCGACGGCCACTCCCTCTTGCACCAACTGCGAGACATACTTGC
AAGGAGACTTCTCCAACGGGTACGCCCAGCGGGTCAGCCCGTCCAACCTC
ATCCTCTTCCACGTCTGCAAACTCCGCACGGGCACCAAGAAGGAGAAGCA
TGAGGCGTGCATCCAGCTAGGCAAGTATGCCGCCACTTCAGCTGACTTGA
GAGGCCAAGTTCTGGCTGCCGGGGGGCTGGCCTCGTTGATTCAAGTCCGG
CCCGACGTGCAATTGGCGTCGGCTAAGGCCATCGCCCATGCCATCTTGGG
TGTAGACGATGCGTGGGTTTTGTTGAGATTTTCACGGGGCATTCTGGATG
CGTTGCGCCTGTTGCTAGTAACGAGCAAGGAGGCCCGAGAGGCAAAGCAG
CAGGAGGAGCTGTTGTTGCAGCAGGGCGAGCAGGAGCAAAAGCAGGAGCT
AGATGAGCCAAAGCCAACTTCAGCACCTGAAACGGAGGAAATGCAAAGAG
TGGATGAGACCAGTCCTTGTCATTACAGGCATTTGGTTGCACGTGTACTG
GCGCACATGATCGTTATAATCAAGCAGGAATGGAGGCACGCATCCGGAGA
TGCCCCTCCAACCTCGGAGAGGTTTTTGGCCTGGACGACGAGCAAGACAA
AGAGCTCCTCGACCATAACTGATAGCTTGGGGAGGGTGGTGGAACTTGCA
ATGATGCTGGCAGAGGATGACTGTGGTCGGACAATCACCTCGGGGGGACG
AAGAGGGCAAGGAAACGGAGGAGCAGGAGGAGGAGGAGGAGGAGCCTGTC
CTAAGTCGTCCTCGTCATTTCGAGCGCAACAACAGCAGTTGCAGGGCAGT
AGTGCCTTTCTTGCTTCTTCCCTGCAGATGGATCCTTCCGATCGTGATGC
TACTATTCTAACGGCGTTTTCTCTCGCGCAGACTGCACATGTAGAAGCTA
GCCGTGTCCTGCTTGTCAACCGCGGACTCCTCCCCCTCCTCGAGGAATGG
CTTACCTCAAACGTCAAGGATATAGAACGCCAAGCCGTTTCTATCGTCGC
TTCACTCTGTGCCCGGCCCCATGACGACGAAAAAAGCTGTGGCACCAACA
ACAGCAGCAGCAGCAGTAACAGTTCCGGAGTTGGTTCCCTCGACATATAC
ACACGAGGCTTCATCGACGCCAAAATTCTGGCATCCAATATTTTACCTCA
CCTTCTTCCTCTTGCGTCTAGTAATGAAGTCGAAATTAGAGGGCATGTGG
CGGAGGCCCTGGCTGACCTGTCGAGGCAAGCACAGAACCGATCAGCGCTG
GTTAGGACAGGAGGAATCTCTTCCTTGGTCTTGTTGTTGGGGGATGCAGC
GGGCGAACTGAATGCTCAAGCTGAGGTGGCGGAGCATGCCTTGACGGCTC
TGAATAACCTTGCGATGGACCACCAGGAAGCAGGGGGGGGGGTGGAGGAG
GGGGAGGGATGGGGGGAGGGTTGA
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Coding sequence (CDS) from alignment at chr21:388857..390380-

>NO21G01280.1 ID=NO21G01280.1|Name=NO21G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=1515bp|location=Sequence derived from alignment at chr21:388857..390380- (Nannochloropsis oceanica)
ATGGACGATCCGGACACGGAAGCGGCGGAGATGTCGTCTTCTACAGCCTC
GACGGCCACTCCCTCTTGCACCAACTGCGAGACATACTTGCAAGGAGACT
TCTCCAACGGGTACGCCCAGCGGGTCAGCCCGTCCAACCTCATCCTCTTC
CACGTCTGCAAACTCCGCACGGGCACCAAGAAGGAGAAGCATGAGGCGTG
CATCCAGCTAGGCAAGTATGCCGCCACTTCAGCTGACTTGAGAGGCCAAG
TTCTGGCTGCCGGGGGGCTGGCCTCGTTGATTCAAGTCCGGCCCGACGTG
CAATTGGCGTCGGCTAAGGCCATCGCCCATGCCATCTTGGGTGTAGACGA
TGCGTGGGTTTTGTTGAGATTTTCACGGGGCATTCTGGATGCGTTGCGCC
TGTTGCTAGTAACGAGCAAGGAGGCCCGAGAGGCAAAGCAGCAGGAGGAG
CTGTTGTTGCAGCAGGGCGAGCAGGAGCAAAAGCAGGAGCTAGATGAGCC
AAAGCCAACTTCAGCACCTGAAACGGAGGAAATGCAAAGAGTGGATGAGA
CCAGTCCTTGTCATTACAGGCATTTGGTTGCACGTGTACTGGCGCACATG
ATCGTTATAATCAAGCAGGAATGGAGGCACGCATCCGGAGATGCCCCTCC
AACCTCGGAGAGGTTTTTGGCCTGGACGACGAGCAAGACAAAGAGCTCCT
CGACCATAACTGATAGCTTGGGGAGGGTGGTGGAACTTGCAATGATGCTG
GCAGAGGATGACTGTGGTCGGACAATCACCTCGGGGGGACGAAGAGGGCA
AGGAAACGGAGGAGCAGGAGGAGGAGGAGGAGGAGCCTGTCCTAAGTCGT
CCTCGTCATTTCGAGCGCAACAACAGCAGTTGCAGGGCAGTAGTGCCTTT
CTTGCTTCTTCCCTGCAGATGGATCCTTCCGATCGTGATGCTACTATTCT
AACGGCGTTTTCTCTCGCGCAGACTGCACATGTAGAAGCTAGCCGTGTCC
TGCTTGTCAACCGCGGACTCCTCCCCCTCCTCGAGGAATGGCTTACCTCA
AACGTCAAGGATATAGAACGCCAAGCCGTTTCTATCGTCGCTTCACTCTG
TGCCCGGCCCCATGACGACGAAAAAAGCTGTGGCACCAACAACAGCAGCA
GCAGCAGTAACAGTTCCGGAGTTGGTTCCCTCGACATATACACACGAGGC
TTCATCGACGCCAAAATTCTGGCATCCAATATTTTACCTCACCTTCTTCC
TCTTGCGTCTAGTAATGAAGTCGAAATTAGAGGGCATGTGGCGGAGGCCC
TGGCTGACCTGTCGAGGCAAGCACAGAACCGATCAGCGCTGGTTAGGACA
GGAGGAATCTCTTCCTTGGTCTTGTTGTTGGGGGATGCAGCGGGCGAACT
GAATGCTCAAGCTGAGGTGGCGGAGCATGCCTTGACGGCTCTGAATAACC
TTGCGATGGACCACCAGGAAGCAGGGGGGGGGGTGGAGGAGGGGGAGGGA
TGGGGGGAGGGTTGA
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Synonyms
Publications