NO21G01230, NO21G01230 (gene) Nannochloropsis oceanica

Overview
NameNO21G01230
Unique NameNO21G01230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2355
Alignment locationchr21:374503..376857 +

Link to JBrowse

Properties
Property NameValue
DescriptionC6 transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:374503..376857 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO21G01230 vs. NCBI_GenBank
Match: EWM22661.1 (c6 transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 4.500e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 
Query:  558 KAFRKSCDFCTSTKIRCDGHKPSCSNCEKRSITCHYSQRKRPGPKLSVSYLSGREMFHAKW 619
            K FRKSCDFCT+TKIRCDG KP+C NC+KR + CHYS++KRPGPKLS ++   R   + +W
Sbjct:  394 KRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNAFKRERGRVNTRW 454
The following BLAST results are available for this feature:
BLAST of NO21G01230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceEWM22661.1
Match NameE-valueIdentityDescription
EWM22661.14.500e-1562.30c6 transcription factor [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004656NSK004656Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01230.1NO21G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201348gene_8083Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100023g58gene7811Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01230.1NO21G01230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01230 ID=NO21G01230|Name=NO21G01230|organism=Nannochloropsis oceanica|type=gene|length=2355bp
AGGAGCAGACAGCGTAAGTAAAGTTGTCGCGGATGGTGCTTAGGCGGATA
ATATCCGTACGCCGTCGGGACCAAGCATGGTGACCAAGTCAGAGTCGGCC
AACAACCGCATTAACTGCAGCACCAGTTCGCCTTCATTAGCAGTGCCGCG
CGCCCCTCACTCTGAGCCTAGGATGGATGAGACTACAAGTGACTTGAGCA
TGGCGGCCCAACTACTGGCATCTGAATGGAATGTGGCAGGGCAGGGCACC
GGGCAAGGGAAGGCCACGGCATCAATAACCGGCAACAGCTTGAAGCGAGA
GCGAGGAGCTCCGTCGACAGATCTGACTAGAAGAGGACCGGGCATGGGGA
GCAACCAAAgtaagtgcggccgccttcttaattatctcagatatcaagag
atgactaagttacggccttgtagttgccccttccatcttattccctgcag
atgccgtcggagaaaacgaatacacccctcactctcctacctccacctcc
ccgaccccgtccaaacaccacagGACACGCATCTCGTGAACCTCTTATCA
ATCCCAGTTCACATGGTGAGACAAAACAGCAACAGTTGCAAGCCAGTTTA
CCGACGGCTCAAGGAGCAATGGCTGCGGTAGGAAGGGGACAATCCATAGT
CTGGCCTAGGGCAACATTAGGTAGCGATGATGGCCACGCGCGCTTGCCTG
TGACACTGAGGAAAGAGGAGGGGATCGCAGTTGCTGGAGGGGGACAGCAA
CAGCAGCAGCTTCAAGTCGCTCATCGGCAACATCATCACCTGCATCACCA
TCACCACAACCATCACCGGCAGGATGGGGACCGGCAATTTAATCATGATC
ATCACCATTTGCAGCAGCTCCAGCAGCGGTACCATCTAAAGCAGCAACAA
GAGCAACAAGATATAGACATCAGTGCCAGCAACCAGGAATTGAAAGAGAT
GTTGAAACAGGCGAAAGCTAGGATCAAAGACCTTAGCAGCATGCTCGAGA
AATACGAGGCAGAAAACAGTTATCTGAGACACTTCATGGAAACGCTGCCT
CGCAGGGGAGAGGAAAGGGGGAGGGATGGGTATGCATTGCCAGGGCTTTC
TATTGCTGATGATGGTCCGCCAATACGGATCAGTGCACCTTGCCTGTATG
GGGAAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGATGGAATATTTGTAAGACCACGGCATATTCTTGCTC
AACCCCAGCTGTGGCAGCAGCAGCAGCAGCAGCTACAACAATACCAACAG
CAGCAGCAACAACAACAACCACCTCAGCAGCAGTATCTGCAGCAGCATCA
GCAGCAGATCCAGCAACAGCAGCCGGGGCAGCAGCAGCAGCATCAAGGAG
ACAGTAATCCTTTAGGCAGGCAGGGGGGAATCGATATGAGCATTAAGAGT
CTGGAAATTTGTCGCAGTAGCAGCGGCAGCCGGGGCACAACCAATGGTGT
TGAGAGCGCCGAGTGTCGGAAACGGGCACGTGGACCCGACCTTGATGATC
AGCAACAGCAGTACCAGCAGCAGCAGTACCATCTGCAACACCACCACTAC
CGCTGTCAGGGTGAAGTAGAAGGAGGATATGTAGGAAGTGAGAAATGTTT
GATGACTGCTAGACCTTTCAACGTTGCTTGCCCTCCTCTTCCTGCTGCTG
CTGCTGCGGTAACTTCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCTTCCA
ACGATGGCAGCCTCGTGCCTACAACTGCCGCCAGCAGGAAGGGCACTAAA
CGAGGGAGGAATGACTGGAATCCATGACAGCGACAGTAGCACCAGCAGCA
CTAACCACAGCAAGGCCTTTCGGAAGAGCTGTGACTTCTGTACGAGCACC
AAGATCAGGTGTGATGGGCACAAGCCCTCTTGTAGCAACTGTGAGAAGAG
AAGCATCACATGTCACTACTCTCAGCGGAAACGACCAGGCCCTAAACTAA
GTGTTTCGTATTTGAGTGGTCGAGAAATGTTTCATGCAAAGTGGGCGCGT
GATAACTCTCTTTCTGCTTTACCAGGGGCAGGGAGAGGAGGAGGAGGAGG
AGGAGAAGTTGCAGCAGCAGCAGAAGCAGCTGGATCAGGAGGAGGGGGCC
CACCGCATTACGTGGCGCAAGTGATGCGCTTTCCACAGCTTCCTGTCCCT
TGTCGACCGCAACCGCAACAGCAACAGCAACAGCAACCGCAACAACAACA
GCAACAGCAGCAACAACAACAGCCGTTACCACCACCACCACCACCACCAC
CATAA
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protein sequence of NO21G01230.1

>NO21G01230.1-protein ID=NO21G01230.1-protein|Name=NO21G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MVTKSESANNRINCSTSSPSLAVPRAPHSEPRMDETTSDLSMAAQLLASE
WNVAGQGTGQGKATASITGNSLKRERGAPSTDLTRRGPGMGSNQRHASRE
PLINPSSHGETKQQQLQASLPTAQGAMAAVGRGQSIVWPRATLGSDDGHA
RLPVTLRKEEGIAVAGGGQQQQQLQVAHRQHHHLHHHHHNHHRQDGDRQF
NHDHHHLQQLQQRYHLKQQQEQQDIDISASNQELKEMLKQAKARIKDLSS
MLEKYEAENSYLRHFMETLPRRGEERGRDGYALPGLSIADDGPPIRISAP
CLYGEGRGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGIFVRPRH
ILAQPQLWQQQQQQLQQYQQQQQQQQPPQQQYLQQHQQQIQQQQPGQQQQ
HQGDSNPLGRQGGIDMSIKSLEICRSSSGSRGTTNGVESAECRKRARGPD
LDDQQQQYQQQQYHLQHHHYRCQGEVEGGYVGSEKCLMTARPFNVACPPL
PAAAAAVTSAAAAAPPPPLPTMAASCLQLPPAGRALNEGGMTGIHDSDSS
TSSTNHSKAFRKSCDFCTSTKIRCDGHKPSCSNCEKRSITCHYSQRKRPG
PKLSVSYLSGREMFHAKWARDNSLSALPGAGRGGGGGGEVAAAAEAAGSG
GGGPPHYVAQVMRFPQLPVPCRPQPQQQQQQQPQQQQQQQQQQQPLPPPP
PPPP*
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Synonyms
Publications