Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:374503..376857 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01230.1 vs.
Match: EWM22661.1 (c6 transcription factor [Nannochloropsis gaditana])
HSP 1 Score: 73.9 bits (180), Expect = 2.200e-9
Identity = 61/145 (42.07%), Postives = 77/145 (53.10%), Query Frame = 0
Query: 558 KAFRKSCDFCTSTKIRCDGHKPSCSNCEKRSITCHYSQRKRPGPKLSVSYLSGREMFHAKWARDNSLSALPGAGRGGGGGGEVAAAAEAAGSGGGGP----PHYVAQVMRFPQLPVPCRPQPQQQQQQQPQQQQQQQQQQQPLPP 699
K FRKSCDFCT+TKIRCDG KP+C NC+KR + CHYS++KRPGPKLS ++ R + +W V A++ + P P AQ + PQ P Q Q QP +QQQQQ+QQPL P
Sbjct: 394 KRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNAFKRERGRVNTRWG--------------------VPLASQTEETHLQPPLLKEPRKGAQAAQ-PQDQHKQLPAYDQHQLPQPPCEQQQQQEQQPLHP 517
The following BLAST results are available for this feature:
BLAST of NO21G01230.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 2.20e-9 / Id = 42.07 Sequence EWM22661.1
Match Name E-value Identity Description
EWM22661.1 2.200e-9 42.07 c6 transcription factor [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01230.1 ID=NO21G01230.1|Name=NO21G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2191bp back to top protein sequence of NO21G01230.1
>NO21G01230.1-protein ID=NO21G01230.1-protein|Name=NO21G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp back to top mRNA from alignment at chr21:374503..376857+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01230.1 ID=NO21G01230.1|Name=NO21G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at chr21:374503..376857+ (Nannochloropsis oceanica)ATGGTGACCAAGTCAGAGTCGGCC
AACAACCGCATTAACTGCAGCACCAGTTCGCCTTCATTAGCAGTGCCGCG
CGCCCCTCACTCTGAGCCTAGGATGGATGAGACTACAAGTGACTTGAGCA
TGGCGGCCCAACTACTGGCATCTGAATGGAATGTGGCAGGGCAGGGCACC
GGGCAAGGGAAGGCCACGGCATCAATAACCGGCAACAGCTTGAAGCGAGA
GCGAGGAGCTCCGTCGACAGATCTGACTAGAAGAGGACCGGGCATGGGGA
GCAACCAAA GTAAGTGCGGCCGCCTTCTTAATTATCTCAGATATCAAGAG
ATGACTAAGTTACGGCCTTGTAGTTGCCCCTTCCATCTTATTCCCTGCAG
ATGCCGTCGGAGAAAACGAATACACCCCTCACTCTCCTACCTCCACCTCC
CCGACCCCGTCCAAACACCACAGGACACGCATCTCGTGAACCTCTTATCA
ATCCCAGTTCACATGGTGAGACAAAACAGCAACAGTTGCAAGCCAGTTTA
CCGACGGCTCAAGGAGCAATGGCTGCGGTAGGAAGGGGACAATCCATAGT
CTGGCCTAGGGCAACATTAGGTAGCGATGATGGCCACGCGCGCTTGCCTG
TGACACTGAGGAAAGAGGAGGGGATCGCAGTTGCTGGAGGGGGACAGCAA
CAGCAGCAGCTTCAAGTCGCTCATCGGCAACATCATCACCTGCATCACCA
TCACCACAACCATCACCGGCAGGATGGGGACCGGCAATTTAATCATGATC
ATCACCATTTGCAGCAGCTCCAGCAGCGGTACCATCTAAAGCAGCAACAA
GAGCAACAAGATATAGACATCAGTGCCAGCAACCAGGAATTGAAAGAGAT
GTTGAAACAGGCGAAAGCTAGGATCAAAGACCTTAGCAGCATGCTCGAGA
AATACGAGGCAGAAAACAGTTATCTGAGACACTTCATGGAAACGCTGCCT
CGCAGGGGAGAGGAAAGGGGGAGGGATGGGTATGCATTGCCAGGGCTTTC
TATTGCTGATGATGGTCCGCCAATACGGATCAGTGCACCTTGCCTGTATG
GGGAAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGATGGAATATTTGTAAGACCACGGCATATTCTTGCTC
AACCCCAGCTGTGGCAGCAGCAGCAGCAGCAGCTACAACAATACCAACAG
CAGCAGCAACAACAACAACCACCTCAGCAGCAGTATCTGCAGCAGCATCA
GCAGCAGATCCAGCAACAGCAGCCGGGGCAGCAGCAGCAGCATCAAGGAG
ACAGTAATCCTTTAGGCAGGCAGGGGGGAATCGATATGAGCATTAAGAGT
CTGGAAATTTGTCGCAGTAGCAGCGGCAGCCGGGGCACAACCAATGGTGT
TGAGAGCGCCGAGTGTCGGAAACGGGCACGTGGACCCGACCTTGATGATC
AGCAACAGCAGTACCAGCAGCAGCAGTACCATCTGCAACACCACCACTAC
CGCTGTCAGGGTGAAGTAGAAGGAGGATATGTAGGAAGTGAGAAATGTTT
GATGACTGCTAGACCTTTCAACGTTGCTTGCCCTCCTCTTCCTGCTGCTG
CTGCTGCGGTAACTTCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCTTCCA
ACGATGGCAGCCTCGTGCCTACAACTGCCGCCAGCAGGAAGGGCACTAAA
CGAGGGAGGAATGACTGGAATCCATGACAGCGACAGTAGCACCAGCAGCA
CTAACCACAGCAAGGCCTTTCGGAAGAGCTGTGACTTCTGTACGAGCACC
AAGATCAGGTGTGATGGGCACAAGCCCTCTTGTAGCAACTGTGAGAAGAG
AAGCATCACATGTCACTACTCTCAGCGGAAACGACCAGGCCCTAAACTAA
GTGTTTCGTATTTGAGTGGTCGAGAAATGTTTCATGCAAAGTGGGCGCGT
GATAACTCTCTTTCTGCTTTACCAGGGGCAGGGAGAGGAGGAGGAGGAGG
AGGAGAAGTTGCAGCAGCAGCAGAAGCAGCTGGATCAGGAGGAGGGGGCC
CACCGCATTACGTGGCGCAAGTGATGCGCTTTCCACAGCTTCCTGTCCCT
TGTCGACCGCAACCGCAACAGCAACAGCAACAGCAACCGCAACAACAACA
GCAACAGCAGCAACAACAACAGCCGTTACCACCACCACCACCACCACCAC
CATAA back to top Coding sequence (CDS) from alignment at chr21:374503..376857+
>NO21G01230.1 ID=NO21G01230.1|Name=NO21G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at chr21:374503..376857+ (Nannochloropsis oceanica) back to top