NO21G01130, NO21G01130 (gene) Nannochloropsis oceanica

Overview
NameNO21G01130
Unique NameNO21G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr21:349545..350237 +

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Properties
Property NameValue
DescriptionRna methylase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:349545..350237 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Homology
BLAST of NO21G01130 vs. NCBI_GenBank
Match: EWM22616.1 (rna methylase [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 1.400e-53
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 0
Query:   17 QIEAFVSRHQAATDELEDIHMNACIDEAQACAERRTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDK-VKFFRLDLLDDQDKALRFLIAAVEAQMSETG-----GGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVTLAYHFRGPL----TETVDLNQAGEGRIHVHRLNR 231
            QIEA V+RH   T+ LED H+++CIDEA    +R TLSPFLPT A DLA+IF  L++GPRHI+VDLGCGDGRPLIAAALL  CRG+GVDISQ+CI LA++I ++EGL D+ V FFR DLL DQ+  L  L+ AVEA+  E       G E VV+FLY+YP+LL RLV L+ RL  A +   R   V+VVTL YH   P+     E V   + G GR+ +H L +
Sbjct:   14 QIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRR---VEVVTLTYHLEAPVGGGEGEGVLYRECG-GRVEIHTLEK 233          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: XP_005855210.1 (rna methylase, partial [Nannochloropsis gaditana CCMP526] >EKU21150.1 rna methylase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 213.8 bits (543), Expect = 5.700e-52
Identity = 116/199 (58.29%), Postives = 143/199 (71.86%), Query Frame = 0
Query:   17 QIEAFVSRHQAATDELEDIHMNACIDEAQACAERRTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDK-VKFFRLDLLDDQDKALRFLIAAVEAQMSETG-----GGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVTLAYHFRGPL 210
            QIEA V+RH   T+ LED H+++CIDEA    +R TLSPFLPT A DLA+IF  L++GPRHI+VDLGCGDGRPLIAAALL  CRG+GVDISQ+CI LA++I ++EGL D+ V FFR DLL DQ+  L  L+ AVEA+  E       G E VV+FLY+YP+LL RLV L+ RL  A +   R   V+VVTL YH   P+
Sbjct:   14 QIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRR---VEVVTLTYHLEAPV 209          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: XP_002178009.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50823.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 106.3 bits (264), Expect = 1.300e-19
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 0
Query:   53 LSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVEAQMSETGGGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVTLAYH 205
            LSP++PTTA  +A   E   +    +++D+GCGDGR  ++AA L GCR +G+D+S  CI +AR +A EE L D++ FF  D   D  + L       ++ + E+   +  VIFLY YP+LL RL  L+ +              +VVTL YH
Sbjct:   85 LSPYVPTTAAKIAKFVEFASLLESDVLLDIGCGDGRICVSAARLSGCRAVGIDVSPLCIAMARELAREENLEDRLSFFEADATIDPKRLL-------QSPLLESDLKDVTVIFLYTYPTLLGRLFPLLAKFT-------ENGKARVVTLTYH 222          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: WP_088335618.1 (methyltransferase domain-containing protein [Methanopyrus sp. KOL6])

HSP 1 Score: 77.4 bits (189), Expect = 6.400e-11
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 0
Query:   56 FLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVEAQMSETGGGEKVVIFLYIYPSLLERLVE 179
            F+PT    +  I   L++ P + +VDLGCGDGR +I+AA L GC G+GVD+ ++ ++LA T +   G+ DK  F   D+ D         +  +E         +  V+F+Y+ PSLLE + E
Sbjct:   36 FVPTPIETVVRILRKLELTPENRVVDLGCGDGRFVISAAYLYGCEGVGVDVREDVLELALTKSETLGVDDKTIFIHSDVRD---------VDLLEL--------DPDVVFVYLVPSLLEEISE 141          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: WP_017288877.1 (class I SAM-dependent methyltransferase [Leptolyngbya boryana] >BAS56546.1 putative SAM-dependent methyltransferase [Leptolyngbya boryana IAM M-101] >BAS62894.1 putative SAM-dependent methyltransferase [Leptolyngbya boryana dg5] >BAY57275.1 putative SAM-dependent methyltransferase [Leptolyngbya boryana NIES-2135])

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-10
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0
Query:   50 RRTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDL 135
            RR    F+PT    + T+ E LQ+    +I DLGCGDGR LI+AAL  G RG+G+D+    +  A+  A E G+RD+VKF   DL
Sbjct:    3 RRPDIAFIPTPEAAIETLLEVLQVNDSDVIYDLGCGDGRILISAALQFGARGVGIDLDPLRVKEAQAKADELGIRDRVKFQEADL 87          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: OLE97624.1 (hypothetical protein AUG75_06060 [Cyanobacteria bacterium 13_1_20CM_4_61_6])

HSP 1 Score: 74.3 bits (181), Expect = 5.400e-10
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 0
Query:   55 PFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVEAQMSETGGGEKVVIFLYIYPSLLERLV-ELVRRLA 185
            P+ P+T   ++ + E  + GP+ ++ DLGCGDGR +IAAA   G RG+GV+I    + +A   A   G+ D+V+F R DL                    E   GE  V+ L++Y +L  RL+ +L+R LA
Sbjct:   43 PYFPSTDAAVSAMLELARTGPKDVVYDLGCGDGRIVIAAAKDFGARGVGVEIDPAPLRMAVYRAQRAGVGDRVRFVRGDLF-------------------EADIGEATVVTLFLYETLNRRLLPKLLRELA 154          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: AAM01668.1 (SAM-dependent methyltransferase [Methanopyrus kandleri AV19])

HSP 1 Score: 73.9 bits (180), Expect = 7.100e-10
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 0
Query:   57 LPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVEAQMSETGGGEKVVIFLYIYPSLLERLVE 179
            +PT    +  I   L++ P++ +VDLGCGDGR +I+AA L GC G+GVD+ ++ ++LAR  +    + DK  F   D+ D   + L                    V+F+Y+ PSLLE + E
Sbjct:   37 VPTPIEIVVEILRKLELTPKNRVVDLGCGDGRFVISAAYLYGCEGMGVDVREDVLELARAKSETLRVDDKTIFIHSDVRDIDLREL-----------------NPDVVFVYLMPSLLEEISE 141          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: KLI65244.1 (hypothetical protein AAV99_04530 [Erythrobacter marinus])

HSP 1 Score: 73.9 bits (180), Expect = 7.100e-10
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0
Query:   55 PFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLD----DQDKALRFLIAAVEAQM 154
            P++ T +  +  + +  ++GP   ++DLG GDGR LIAAAL RG  GLGVD+    ID A+  A   GL D+V F   DL D    D D    FL+ +V  ++
Sbjct:   23 PYVGTRSAMVDAMLDMAEVGPSDYVIDLGTGDGRILIAAALDRGAGGLGVDLDPSLIDDAKAEADRLGLSDRVAFREQDLFDTSLQDADVVTMFLLPSVNLRL 125          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: WP_052768903.1 (methyltransferase domain-containing protein [Erythrobacter marinus])

HSP 1 Score: 73.9 bits (180), Expect = 7.100e-10
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 0
Query:   55 PFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLD----DQDKALRFLIAAVEAQM 154
            P++ T +  +  + +  ++GP   ++DLG GDGR LIAAAL RG  GLGVD+    ID A+  A   GL D+V F   DL D    D D    FL+ +V  ++
Sbjct:   52 PYVGTRSAMVDAMLDMAEVGPSDYVIDLGTGDGRILIAAALDRGAGGLGVDLDPSLIDDAKAEADRLGLSDRVAFREQDLFDTSLQDADVVTMFLLPSVNLRL 154          
BLAST of NO21G01130 vs. NCBI_GenBank
Match: OLP94540.1 (Neurofilament heavy polypeptide [Symbiodinium microadriaticum])

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-9
Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 0
Query:   32 LEDIHMNACIDEAQACAERRTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVEAQ 153
            LED+   A  D   +     ++SPF+P  A  +  + +A ++GP  ++ DLGCGDG  LI AA   GCR +G+DI   CI  A   A E  + ++  F R DLL      L  L A  E Q
Sbjct: 2111 LEDLQQFA--DSEDSAFGPLSVSPFVPCAAGRIPYVLQAARLGPEDVLWDLGCGDGVVLIEAARRCGCRCVGLDIDGPCITAALQRAREANVEERCTFLRCDLLQLPQGTLGGLSAEQEFQ 2229          
The following BLAST results are available for this feature:
BLAST of NO21G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22616.11.400e-5354.91rna methylase [Nannochloropsis gaditana][more]
XP_005855210.15.700e-5258.29rna methylase, partial [Nannochloropsis gaditana C... [more]
XP_002178009.11.300e-1938.16predicted protein [Phaeodactylum tricornutum CCAP ... [more]
WP_088335618.16.400e-1135.77methyltransferase domain-containing protein [Metha... [more]
WP_017288877.11.900e-1045.88class I SAM-dependent methyltransferase [Leptolyng... [more]
OLE97624.15.400e-1035.11hypothetical protein AUG75_06060 [Cyanobacteria ba... [more]
AAM01668.17.100e-1034.43SAM-dependent methyltransferase [Methanopyrus kand... [more]
KLI65244.17.100e-1039.81hypothetical protein AAV99_04530 [Erythrobacter ma... [more]
WP_052768903.17.100e-1039.81methyltransferase domain-containing protein [Eryth... [more]
OLP94540.11.600e-937.19Neurofilament heavy polypeptide [Symbiodinium micr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004667NSK004667Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01130.1NO21G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602390gene_8068Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100528g4gene7823Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01130.1NO21G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01130 ID=NO21G01130|Name=NO21G01130|organism=Nannochloropsis oceanica|type=gene|length=693bp
ATGGCGACAAAACCGTCACCACAACCCTTGCTACAGCTATTCACTGTGCA
AATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACCGATGAGCTCGAAG
ATATCCATATGAACGCGTGTATAGACGAAGCGCAAGCGTGTGCCGAACGA
AGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAGATTTGGCCACCAT
TTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATAGTCGACTTGGGCT
GTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCTGCGTGGATGCCGT
GGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACCTGGCCAGAACCAT
TGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTCTTTAGATTAGACC
TGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAATAGCAGCGGTGGAG
GCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCGTAATTTTCCTATA
CATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTGGTGAGGCGCTTGG
CCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGTACAAGTTGTTACG
CTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTGTAGACTTGAATCA
GGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAACAGGTGA
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protein sequence of NO21G01130.1

>NO21G01130.1-protein ID=NO21G01130.1-protein|Name=NO21G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MATKPSPQPLLQLFTVQIEAFVSRHQAATDELEDIHMNACIDEAQACAER
RTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCR
GLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVE
AQMSETGGGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVT
LAYHFRGPLTETVDLNQAGEGRIHVHRLNR*
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Synonyms
Publications