NO21G01130.1, NO21G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01130.1
Unique NameNO21G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr21:349545..350237 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:349545..350237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01130.1 vs.
Match: EWM22616.1 (rna methylase [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 1.400e-53
Identity = 123/224 (54.91%), Postives = 154/224 (68.75%), Query Frame = 0 
Query:   17 QIEAFVSRHQAATDELEDIHMNACIDEAQACAERRTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCRGLGVDISQECIDLARTIATEEGLRDK-VKFFRLDLLDDQDKALRFLIAAVEAQMSETG-----GGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVTLAYHFRGPL----TETVDLNQAGEGRIHVHRLNR 231
            QIEA V+RH   T+ LED H+++CIDEA    +R TLSPFLPT A DLA+IF  L++GPRHI+VDLGCGDGRPLIAAALL  CRG+GVDISQ+CI LA++I ++EGL D+ V FFR DLL DQ+  L  L+ AVEA+  E       G E VV+FLY+YP+LL RLV L+ RL  A +   R   V+VVTL YH   P+     E V   + G GR+ +H L +
Sbjct:   14 QIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRR---VEVVTLTYHLEAPVGGGEGEGVLYRECG-GRVEIHTLEK 233
The following BLAST results are available for this feature:
BLAST of NO21G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22616.11.400e-5354.91rna methylase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01130NO21G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01130.1NO21G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01130.1.cds1NO21G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01130.1 ID=NO21G01130.1|Name=NO21G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
ATGGCGACAAAACCGTCACCACAACCCTTGCTACAGCTATTCACTGTGCA
AATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACCGATGAGCTCGAAG
ATATCCATATGAACGCGTGTATAGACGAAGCGCAAGCGTGTGCCGAACGA
AGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAGATTTGGCCACCAT
TTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATAGTCGACTTGGGCT
GTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCTGCGTGGATGCCGT
GGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACCTGGCCAGAACCAT
TGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTCTTTAGATTAGACC
TGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAATAGCAGCGGTGGAG
GCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCGTAATTTTCCTATA
CATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTGGTGAGGCGCTTGG
CCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGTACAAGTTGTTACG
CTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTGTAGACTTGAATCA
GGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAACAGGTGA
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protein sequence of NO21G01130.1

>NO21G01130.1-protein ID=NO21G01130.1-protein|Name=NO21G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MATKPSPQPLLQLFTVQIEAFVSRHQAATDELEDIHMNACIDEAQACAER
RTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCR
GLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVE
AQMSETGGGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVT
LAYHFRGPLTETVDLNQAGEGRIHVHRLNR*
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mRNA from alignment at chr21:349545..350237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01130.1 ID=NO21G01130.1|Name=NO21G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp|location=Sequence derived from alignment at chr21:349545..350237+ (Nannochloropsis oceanica)
ATGGCGACAAAACCGTCACCACAACCCTTGCTACAGCTATTCACTGTGCA
AATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACCGATGAGCTCGAAG
ATATCCATATGAACGCGTGTATAGACGAAGCGCAAGCGTGTGCCGAACGA
AGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAGATTTGGCCACCAT
TTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATAGTCGACTTGGGCT
GTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCTGCGTGGATGCCGT
GGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACCTGGCCAGAACCAT
TGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTCTTTAGATTAGACC
TGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAATAGCAGCGGTGGAG
GCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCGTAATTTTCCTATA
CATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTGGTGAGGCGCTTGG
CCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGTACAAGTTGTTACG
CTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTGTAGACTTGAATCA
GGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAACAGGTGA
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Coding sequence (CDS) from alignment at chr21:349545..350237+

>NO21G01130.1 ID=NO21G01130.1|Name=NO21G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr21:349545..350237+ (Nannochloropsis oceanica)
ATGGCGACAAAACCGTCACCACAACCCTTGCTACAGCTATTCACTGTGCA
AATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACCGATGAGCTCGAAG
ATATCCATATGAACGCGTGTATAGACGAAGCGCAAGCGTGTGCCGAACGA
AGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAGATTTGGCCACCAT
TTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATAGTCGACTTGGGCT
GTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCTGCGTGGATGCCGT
GGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACCTGGCCAGAACCAT
TGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTCTTTAGATTAGACC
TGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAATAGCAGCGGTGGAG
GCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCGTAATTTTCCTATA
CATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTGGTGAGGCGCTTGG
CCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGTACAAGTTGTTACG
CTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTGTAGACTTGAATCA
GGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAACAGGTGA
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Synonyms
Publications