NO21G01100, NO21G01100 (gene) Nannochloropsis oceanica

Overview
NameNO21G01100
Unique NameNO21G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1617
Alignment locationchr21:342915..344531 +

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Properties
Property NameValue
DescriptionRibosomal protein l27
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:342915..344531 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR001141Ribosomal_L27e
IPR005824KOW
Homology
BLAST of NO21G01100 vs. NCBI_GenBank
Match: XP_005852627.1 (large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526] >EKU23205.1 large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526] >EWM22601.1 ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 247.3 bits (630), Expect = 2.900e-62
Identity = 125/141 (88.65%), Postives = 137/141 (97.16%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGS DK+FPHAIVCGIDVAPRKVTR+MNKKTIKRK+KVKPF+K++NYTHI+PTRY VDIDLKKAEE TDD+K LKRAIRKTLEERYL+QA++AAKSERKSQGT+YFYKKLRF
Sbjct:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: CBJ25831.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 164.9 bits (416), Expect = 1.900e-37
Identity = 89/144 (61.81%), Postives = 113/144 (78.47%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQTDDKKT---LKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGIIK GKVVV+LAGRYAG+KA+VVK  DEGS ++KF HAIV GID  PR+VT+ M+K  IK++TK+KPF+K +N  HIMPTRY VDIDLKKA ++T  K +   +++A+RK  EERYLNQ  V  KSE+K+ G  YF++KLRF
Sbjct:   21 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPFVKYVNVNHIMPTRYQVDIDLKKAVDETAIKASPTDVRKAVRKIFEERYLNQKDV--KSEKKATGVKYFFEKLRF 162          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: XP_008614658.1 (hypothetical protein SDRG_10447 [Saprolegnia diclina VS20] >XP_012205390.1 hypothetical protein SPRG_10070 [Saprolegnia parasitica CBS 223.65] >EQC31930.1 hypothetical protein SDRG_10447 [Saprolegnia diclina VS20] >KDO23924.1 hypothetical protein SPRG_10070 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 162.5 bits (410), Expect = 9.300e-37
Identity = 85/146 (58.22%), Postives = 111/146 (76.03%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQ-----TDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGI+K GKVVV+L GRYAG+KA+VVK  DEG  D+KF HAIV GID  PRK+TR+M KK + +++KVKPF+K++NYTHIMPTRY  DIDLKK  ++      + +   ++ I+K  E+RYLNQA  A KSE+K+ G S+F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPFVKAVNYTHIMPTRYVADIDLKKVLDEEVMATPEARIESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: XP_002906319.1 (60S ribosomal protein L27 [Phytophthora infestans T30-4] >EEY65720.1 60S ribosomal protein L27 [Phytophthora infestans T30-4])

HSP 1 Score: 162.5 bits (410), Expect = 9.300e-37
Identity = 89/150 (59.33%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKA---------EEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGI+K GKVVV+L GR+AG+KA+VVK  DEG  D+KF HAIV GID  PRKVTR M K  +K++TKVKPF+K +NY HIMPTRY  DIDLKK          E + + +KT+K    K  EERYLNQA  A KSE+K+ G S+F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFSHAIVAGIDRYPRKVTRAMGKNKLKKRTKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPESRIESRKTIK----KVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: OQR91445.1 (60S ribosomal protein L27 [Thraustotheca clavata])

HSP 1 Score: 161.0 bits (406), Expect = 2.700e-36
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 0
Query:    4 IKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLK---------KAEEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            +K GKVVVVL GRYAG+KA+VVKA DEG+ D+KF HAIV GID  PRK+TR+M KK + +++K+KPF+K++NY HIMPTRY  DIDLK         KAE + + +KT+K    K  E+RYLNQA  A KSE+K+ G S+F+KKLRF
Sbjct:   10 VKNGKVVVVLNGRYAGRKAIVVKAYDEGNGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKIKPFVKAINYNHIMPTRYVADIDLKKVLDEEVLSKAEARVESRKTIK----KVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 150          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: XP_008911708.1 (hypothetical protein PPTG_16130 [Phytophthora parasitica INRA-310] >ETI37493.1 hypothetical protein F443_16524 [Phytophthora parasitica P1569] >ETK77718.1 hypothetical protein L915_16051 [Phytophthora parasitica] >ETL31164.1 hypothetical protein L916_15944 [Phytophthora parasitica] >ETL84426.1 hypothetical protein L917_15744 [Phytophthora parasitica] >ETM37587.1 hypothetical protein L914_15879 [Phytophthora parasitica] >ETN03164.1 hypothetical protein PPTG_16130 [Phytophthora parasitica INRA-310] >ETO66274.1 hypothetical protein F444_16494 [Phytophthora parasitica P1976] >ETP07366.1 hypothetical protein F441_16335 [Phytophthora parasitica CJ01A1] >ETP35416.1 hypothetical protein F442_16361 [Phytophthora parasitica P10297] >KUF78997.1 60S ribosomal protein L27 [Phytophthora nicotianae] >KUF86688.1 60S ribosomal protein L27 [Phytophthora nicotianae])

HSP 1 Score: 160.6 bits (405), Expect = 3.500e-36
Identity = 88/150 (58.67%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKA---------EEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGI+K GKVVV+L GR+AG+KA+VVK  DEG  D+KF HAIV GID  PRKVTR M K  +K+++KVKPF+K +NY HIMPTRY  DIDLKK          E + + +KT+K    K  EERYLNQA  A KSE+K+ G S+F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPESRIESRKTIK----KVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: XP_009515343.1 (hypothetical protein PHYSODRAFT_353474 [Phytophthora sojae] >EGZ28068.1 hypothetical protein PHYSODRAFT_353474 [Phytophthora sojae])

HSP 1 Score: 160.2 bits (404), Expect = 4.600e-36
Identity = 85/146 (58.22%), Postives = 107/146 (73.29%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEE-----QTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGI+K GKVVV+L GR+AG+KA+VVK  DEG  D+KF HAIV GID  PRKVTR M K  +K+++KVKPF+K +NY HIMPTRY  DIDLKK  +       + +   ++ I+K  EERYLNQA  A KSE+K+ G S+F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTYDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPFVKYVNYNHIMPTRYVADIDLKKVLDDEVLANPETRNESRKTIKKVFEERYLNQA--ACKSEKKAAGVSFFFKKLRF 144          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: GAX92938.1 (60S ribosomal protein L27 [Pythium insidiosum])

HSP 1 Score: 159.5 bits (402), Expect = 7.900e-36
Identity = 89/150 (59.33%), Postives = 111/150 (74.00%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKA---------EEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGI+K GKVV++L GR+AG+KAVVVK  DEG  D+KF HAIV GID  PRKVTR M+K  +K+K+KVKPFIK +N +H+MPTRY VDIDLKK          E + + +KT+K    K  EERYLNQ+AV  KSE+K+ G S+F+KKLRF
Sbjct:    1 MGIVKNGKVVIMLNGRFAGRKAVVVKTHDEGHGDRKFGHAIVAGIDRYPRKVTRAMSKTKLKKKSKVKPFIKVVNLSHVMPTRYVVDIDLKKVLDDEVLANPESRIESRKTIK----KVFEERYLNQSAV--KSEKKAAGVSFFFKKLRF 144          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: OQR87439.1 (60S ribosomal protein L27 [Achlya hypogyna])

HSP 1 Score: 157.1 bits (396), Expect = 3.900e-35
Identity = 82/143 (57.34%), Postives = 108/143 (75.52%), Query Frame = 0
Query:    4 IKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQ-----TDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            +K GKVVV+L GRYAG+KA+VVK  DEG  D+KF HAIV GID  PRK+TR+M KK + +++KVKPF+K++NYTHIMPTRY  DIDLKK  ++      + +   ++ I+K  E+RYLNQA  A KSE+K+ G S+F+KKLRF
Sbjct:    6 VKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPFVKAVNYTHIMPTRYVADIDLKKVLDEEVMATPEARIESRKTIKKVFEDRYLNQA--ACKSEKKAAGVSFFFKKLRF 146          
BLAST of NO21G01100 vs. NCBI_GenBank
Match: XP_008871435.1 (hypothetical protein H310_07727 [Aphanomyces invadans] >ETV99659.1 hypothetical protein H310_07727 [Aphanomyces invadans])

HSP 1 Score: 156.0 bits (393), Expect = 8.700e-35
Identity = 84/150 (56.00%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKA---------EEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGI+K GKVVV+L GRYAG+KA+VVK  DEG  D+KF HAIV GID  PRKVTR+M KK + +++K+KPF+K +NY HI+PTRY  DI+LKK          E + + +KT+K    K  E+RYLNQ   A KSE+K+ G S+F+KKLRF
Sbjct:    1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFAHAIVAGIDRYPRKVTRSMGKKKVAKRSKIKPFVKYVNYNHILPTRYVADIELKKVLDDEVLATPEARIESRKTIK----KVFEDRYLNQG--ATKSEKKAAGVSFFFKKLRF 144          
The following BLAST results are available for this feature:
BLAST of NO21G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
2004006008001000120014001600SequenceXP_005852627.1CBJ25831.1XP_008614658.1XP_002906319.1OQR91445.1XP_008911708.1XP_009515343.1GAX92938.1OQR87439.1XP_008871435.1
Match NameE-valueIdentityDescription
XP_005852627.12.900e-6288.65large subunit ribosomal protein L27e [Nannochlorop... [more]
CBJ25831.11.900e-3761.81conserved unknown protein [Ectocarpus siliculosus][more]
XP_008614658.19.300e-3758.22hypothetical protein SDRG_10447 [Saprolegnia dicli... [more]
XP_002906319.19.300e-3759.3360S ribosomal protein L27 [Phytophthora infestans ... [more]
OQR91445.12.700e-3658.5060S ribosomal protein L27 [Thraustotheca clavata][more]
XP_008911708.13.500e-3658.67hypothetical protein PPTG_16130 [Phytophthora para... [more]
XP_009515343.14.600e-3658.22hypothetical protein PHYSODRAFT_353474 [Phytophtho... [more]
GAX92938.17.900e-3659.3360S ribosomal protein L27 [Pythium insidiosum][more]
OQR87439.13.900e-3557.3460S ribosomal protein L27 [Achlya hypogyna][more]
XP_008871435.18.700e-3556.00hypothetical protein H310_07727 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004671NSK004671Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01100.1NO21G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602380gene_8065Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100126g25gene7827Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01100.1NO21G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01100 ID=NO21G01100|Name=NO21G01100|organism=Nannochloropsis oceanica|type=gene|length=1617bp
AAAAATCAGTACTAAAACAAAGCATTACTTTTTTCCGCATGCCTACCAGT
CATGCTGCTCCTTTCCTTCCCCCAGAAGAACCTTCCCCTTCGCCGTGTGT
AAGCCAATTTGCCTTCGCGCCTTGGCGCAAAGCGACCCGGAGGAGACCCG
TAGCCGCGCCGTGGACCCCACAAGTGATGAGATGAAGAAGCAAATTGGTG
GCCTTCCCAGGACCGCTCGCTTGAGGATGTGCCTTTCTTTTACACTGTGT
GATGGCTGAGGATGTCGGAGAGGGAAGGGTGGTGGCCTTATGGTGTTAGG
AGGGGACGGGGTGTTGTTGCAAGGAGGATGTCTGTCCGAGACGCTTCTTC
GCCTCCCACCATCAGTTCTCTCCTCCCCACCCTCCATCATTACCTTCCGC
GATCGAGACGACTGCCTCTCGTGCTTGCGTTGTGGAGACACCACACTCGC
ACTGATCCCGCGCCACTCTTTCCCACACACTTAACGACACAGGTTACGCC
AATTGGTTGCACTTCGCCTCGAAGGGACAGCAGCGGCCATGGGAATgtac
gtgtgagggggttggaagaaagaaggggaggagatgggtgtgatcatgat
gcggacagtgcttgtggacgaccactctgcatcagcaggcataggccctg
gcacatttaatgccacatgtggccctatatgggcggcggggcgggtttgg
atggaggcgagggatggctgggattgctaggttttccttggtggatgacg
gaggaggaggaggaggaggaggagtggaggactagttgatgttgtcgggt
ggctgggatgggtgcgctggggtggctgcgcttatgcagtgactgaacag
gggtagcatttaagctcccacagtagttgtgcttgcattattcctgtgct
gtctaggtgcctgtggctctagtgccttctttcaatgcccttatatctac
taatgactcaccctttctctttacaaccctcccccctaattctaaaacaa
cagCATCAAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTCGCTATGCCG
GTAAGAAGGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCAGCGGACAAG
AAGTTCCCCCACGCCATCGTGTGTGGAATAGACGTCGCCCCCCGTAAGGT
CACGCGCACGATGAACAAGAAGACCATCAAGCGCAAGACGAAGGTGAAAC
CTTTCATCAAGTCCTTGAACTACACCCATATCATGCCCACGCGGTATGCA
GTGGATATAGACTTAAAGAAGGCGGAGGAGCAGACGGATGACAAGAAAAC
CCTGAAGCGCGCGATTCGCAAGACCTTGGAAGAGCGCTACTTGAACCAAG
CGGCCGTTGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACAAGCTACTTT
TACAAGAAGCTGCGATTCTAAAGATTGGGAGGAAGGGAGGGTGGTAAGCG
GAGGAGGGAGAATGTTGTCTACTTCTTGTCTTCTTTTCGCCTCCAGGGTA
GGGAAGGTGGTTAGGTGTGCGTTTGAATCAGAGACCGGTAGAGCGCGGCC
TGAACGACTGAAGGGTGGGGAGGAGTACGACCAAAGGAAGAAATAAAAGG
TGGAAGCAACGAAATGT
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protein sequence of NO21G01100.1

>NO21G01100.1-protein ID=NO21G01100.1-protein|Name=NO21G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPR
KVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQTDDK
KTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF*
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Synonyms
Publications