NO21G01100.1, NO21G01100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01100.1
Unique NameNO21G01100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1160
Alignment locationchr21:342915..344531 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:342915..344531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01100.1 vs.
Match: XP_005852627.1 (large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526]; EKU23205.1 large subunit ribosomal protein L27e [Nannochloropsis gaditana CCMP526]; EWM22601.1 ribosomal protein l27 [Nannochloropsis gaditana])

HSP 1 Score: 247.3 bits (630), Expect = 2.900e-62
Identity = 125/141 (88.65%), Postives = 137/141 (97.16%), Query Frame = 0 
Query:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPRKVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQTDDKKTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF 142
            MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGS DK+FPHAIVCGIDVAPRKVTR+MNKKTIKRK+KVKPF+K++NYTHI+PTRY VDIDLKKAEE TDD+K LKRAIRKTLEERYL+QA++AAKSERKSQGT+YFYKKLRF
Sbjct:    1 MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSVDKRFPHAIVCGIDVAPRKVTRSMNKKTIKRKSKVKPFVKAINYTHILPTRYVVDIDLKKAEEPTDDRKALKRAIRKTLEERYLDQASIAAKSERKSQGTAYFYKKLRF 141
The following BLAST results are available for this feature:
BLAST of NO21G01100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
10020030040050060070080090010001100SequenceXP_005852627.1
Match NameE-valueIdentityDescription
XP_005852627.12.900e-6288.65large subunit ribosomal protein L27e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01100NO21G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01100.1NO21G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01100.1.cds1NO21G01100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01100.1.cds2NO21G01100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01100.1 ID=NO21G01100.1|Name=NO21G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp
AAAAATCAGTACTAAAACAAAGCATTACTTTTTTCCGCATGCCTACCAGT
CATGCTGCTCCTTTCCTTCCCCCAGAAGAACCTTCCCCTTCGCCGTGTGT
AAGCCAATTTGCCTTCGCGCCTTGGCGCAAAGCGACCCGGAGGAGACCCG
TAGCCGCGCCGTGGACCCCACAAGTGATGAGATGAAGAAGCAAATTGGTG
GCCTTCCCAGGACCGCTCGCTTGAGGATGTGCCTTTCTTTTACACTGTGT
GATGGCTGAGGATGTCGGAGAGGGAAGGGTGGTGGCCTTATGGTGTTAGG
AGGGGACGGGGTGTTGTTGCAAGGAGGATGTCTGTCCGAGACGCTTCTTC
GCCTCCCACCATCAGTTCTCTCCTCCCCACCCTCCATCATTACCTTCCGC
GATCGAGACGACTGCCTCTCGTGCTTGCGTTGTGGAGACACCACACTCGC
ACTGATCCCGCGCCACTCTTTCCCACACACTTAACGACACAGGTTACGCC
AATTGGTTGCACTTCGCCTCGAAGGGACAGCAGCGGCCATGGGAATCATC
AAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTCGCTATGCCGGTAAGAA
GGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCAGCGGACAAGAAGTTCC
CCCACGCCATCGTGTGTGGAATAGACGTCGCCCCCCGTAAGGTCACGCGC
ACGATGAACAAGAAGACCATCAAGCGCAAGACGAAGGTGAAACCTTTCAT
CAAGTCCTTGAACTACACCCATATCATGCCCACGCGGTATGCAGTGGATA
TAGACTTAAAGAAGGCGGAGGAGCAGACGGATGACAAGAAAACCCTGAAG
CGCGCGATTCGCAAGACCTTGGAAGAGCGCTACTTGAACCAAGCGGCCGT
TGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACAAGCTACTTTTACAAGA
AGCTGCGATTCTAAAGATTGGGAGGAAGGGAGGGTGGTAAGCGGAGGAGG
GAGAATGTTGTCTACTTCTTGTCTTCTTTTCGCCTCCAGGGTAGGGAAGG
TGGTTAGGTGTGCGTTTGAATCAGAGACCGGTAGAGCGCGGCCTGAACGA
CTGAAGGGTGGGGAGGAGTACGACCAAAGGAAGAAATAAAAGGTGGAAGC
AACGAAATGT
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protein sequence of NO21G01100.1

>NO21G01100.1-protein ID=NO21G01100.1-protein|Name=NO21G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPR
KVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQTDDK
KTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF*
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mRNA from alignment at chr21:342915..344531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01100.1 ID=NO21G01100.1|Name=NO21G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at chr21:342915..344531+ (Nannochloropsis oceanica)
AAAAATCAGTACTAAAACAAAGCATTACTTTTTTCCGCATGCCTACCAGT
CATGCTGCTCCTTTCCTTCCCCCAGAAGAACCTTCCCCTTCGCCGTGTGT
AAGCCAATTTGCCTTCGCGCCTTGGCGCAAAGCGACCCGGAGGAGACCCG
TAGCCGCGCCGTGGACCCCACAAGTGATGAGATGAAGAAGCAAATTGGTG
GCCTTCCCAGGACCGCTCGCTTGAGGATGTGCCTTTCTTTTACACTGTGT
GATGGCTGAGGATGTCGGAGAGGGAAGGGTGGTGGCCTTATGGTGTTAGG
AGGGGACGGGGTGTTGTTGCAAGGAGGATGTCTGTCCGAGACGCTTCTTC
GCCTCCCACCATCAGTTCTCTCCTCCCCACCCTCCATCATTACCTTCCGC
GATCGAGACGACTGCCTCTCGTGCTTGCGTTGTGGAGACACCACACTCGC
ACTGATCCCGCGCCACTCTTTCCCACACACTTAACGACACAGGTTACGCC
AATTGGTTGCACTTCGCCTCGAAGGGACAGCAGCGGCCATGGGAATGTAC
GTGTGAGGGGGTTGGAAGAAAGAAGGGGAGGAGATGGGTGTGATCATGAT
GCGGACAGTGCTTGTGGACGACCACTCTGCATCAGCAGGCATAGGCCCTG
GCACATTTAATGCCACATGTGGCCCTATATGGGCGGCGGGGCGGGTTTGG
ATGGAGGCGAGGGATGGCTGGGATTGCTAGGTTTTCCTTGGTGGATGACG
GAGGAGGAGGAGGAGGAGGAGGAGTGGAGGACTAGTTGATGTTGTCGGGT
GGCTGGGATGGGTGCGCTGGGGTGGCTGCGCTTATGCAGTGACTGAACAG
GGGTAGCATTTAAGCTCCCACAGTAGTTGTGCTTGCATTATTCCTGTGCT
GTCTAGGTGCCTGTGGCTCTAGTGCCTTCTTTCAATGCCCTTATATCTAC
TAATGACTCACCCTTTCTCTTTACAACCCTCCCCCCTAATTCTAAAACAA
CAGCATCAAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTCGCTATGCCG
GTAAGAAGGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCAGCGGACAAG
AAGTTCCCCCACGCCATCGTGTGTGGAATAGACGTCGCCCCCCGTAAGGT
CACGCGCACGATGAACAAGAAGACCATCAAGCGCAAGACGAAGGTGAAAC
CTTTCATCAAGTCCTTGAACTACACCCATATCATGCCCACGCGGTATGCA
GTGGATATAGACTTAAAGAAGGCGGAGGAGCAGACGGATGACAAGAAAAC
CCTGAAGCGCGCGATTCGCAAGACCTTGGAAGAGCGCTACTTGAACCAAG
CGGCCGTTGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACAAGCTACTTT
TACAAGAAGCTGCGATTCTAAAGATTGGGAGGAAGGGAGGGTGGTAAGCG
GAGGAGGGAGAATGTTGTCTACTTCTTGTCTTCTTTTCGCCTCCAGGGTA
GGGAAGGTGGTTAGGTGTGCGTTTGAATCAGAGACCGGTAGAGCGCGGCC
TGAACGACTGAAGGGTGGGGAGGAGTACGACCAAAGGAAGAAATAAAAGG
TGGAAGCAACGAAATGT
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Coding sequence (CDS) from alignment at chr21:342915..344531+

>NO21G01100.1 ID=NO21G01100.1|Name=NO21G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr21:342915..344531+ (Nannochloropsis oceanica)
ATGGGAATCATCAAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTCGCTA
TGCCGGTAAGAAGGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCAGCGG
ACAAGAAGTTCCCCCACGCCATCGTGTGTGGAATAGACGTCGCCCCCCGT
AAGGTCACGCGCACGATGAACAAGAAGACCATCAAGCGCAAGACGAAGGT
GAAACCTTTCATCAAGTCCTTGAACTACACCCATATCATGCCCACGCGGT
ATGCAGTGGATATAGACTTAAAGAAGGCGGAGGAGCAGACGGATGACAAG
AAAACCCTGAAGCGCGCGATTCGCAAGACCTTGGAAGAGCGCTACTTGAA
CCAAGCGGCCGTTGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACAAGCT
ACTTTTACAAGAAGCTGCGATTCTAA
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Synonyms
Publications