NO21G01070, NO21G01070 (gene) Nannochloropsis oceanica

Overview
NameNO21G01070
Unique NameNO21G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4506
Alignment locationchr21:334906..339411 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:334906..339411 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01070 vs. NCBI_GenBank
Match: EWM22602.1 (hypothetical protein Naga_100126g22 [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 3.400e-32
Identity = 144/385 (37.40%), Postives = 185/385 (48.05%), Query Frame = 0 
Query:  122 LAGGIHSPYMRHLRRESTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVTRAECENCGFKFLCAWSKGGSAYCSLDCRTTHNLHGVEDAFNHLPTGGSIEAAEHCYSLTPQKQ----------QYLQQQQTVEVSPVVHVE----VPDQPQLQGHVGPEAVVPVPA-----PATGGAEVIAAATMA-----------------NVNTDPAITVVDTASGIISSCSSSITTTDATFLPREPGV-IPSSASPLPL-QAQXXXXXXXXXXXXXXXXXXILSLLDP---NAVVALGPRPHACPTPSMMVMPCVSSFSTSNNSSHSDSGGIEGQAARPPSLLPSLTQPLPESSSATCGRGSGP-----SPSLFDSAQIASLERRRHAALH 461
            L GG  SPYMR  R++S G                            RVTRAECENCG+ FLCA+SKGGS YCSLDCRTTHNL+GVEDAFNH+ TG S++AA H +S+TPQ+Q          Q L   Q    +P   ++    V  Q + + +      V + A     P+  G       T A                   +  P     +   G  S+ +++        LP E  +  P+ AS L   + Q       XXXXXXXXXXX      P   + V    PRP AC TP  M+MPC+SSFSTS     + +G  +GQ++  PS   +  +PLP  ++A   R  G      SP  FD+A IASLERRRHAALH
Sbjct:   91 LVGGQASPYMRQARKDSLG--------------SSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQAVYAHRPPPRQPLPGPQGSSEAPRARMDAARSVVRQSENKQNAAAHEDVNMGAGTGVCPSGVGGXXXRTQTEAVHGRARRPVRWPLRPKRRKHPPPLEPRAEGREGAHSAMTTAGLRRPHEGLPSEEEMATPALASDLKCSRGQGLTDPPAXXXXXXXXXXXXXXXSSPLFLHPVAVPRPRPAACATPLEMIMPCLSSFSTSGGEESAAAGDGQGQSSH-PSYPQAFPRPLPPPTAAIRSRAPGSKSDEGSPLPFDTAHIASLERRRHAALH 460
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BLAST of NO21G01070 vs. NCBI_GenBank
Match: XP_005852628.1 (hypothetical protein NGA_0686700, partial [Nannochloropsis gaditana CCMP526] >EKU23206.1 hypothetical protein NGA_0686700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 125.9 bits (315), Expect = 4.100e-25
Identity = 62/113 (54.87%), Postives = 73/113 (64.60%), Query Frame = 0 
Query:  122 LAGGIHSPYMRHLRRESTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVTRAECENCGFKFLCAWSKGGSAYCSLDCRTTHNLHGVEDAFNHLPTGGSIEAAEHCYSLTPQKQ 235
            L GG  SPYMR  R++S G                            RVTRAECENCG+ FLCA+SKGGS YCSLDCRTTHNL+GVEDAFNH+ TG S++AA H +S+TPQ+Q
Sbjct:   91 LVGGQASPYMRQARKDSLG--------------SSISSMGGSEGGSPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQ 189
The following BLAST results are available for this feature:
BLAST of NO21G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22602.13.400e-3237.40hypothetical protein Naga_100126g22 [Nannochlorops... [more]
XP_005852628.14.100e-2554.87hypothetical protein NGA_0686700, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004673NSK004673Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01070.1NO21G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602371gene_8063Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100126g22gene7829Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01070.1NO21G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01070 ID=NO21G01070|Name=NO21G01070|organism=Nannochloropsis oceanica|type=gene|length=4506bp
CTTTGCTGGGCCTTTAAATTGCGAAATCCTCCCAATTATGGCTCCAAATG
CAACCCTTCGGATCCCACGAGAAATTATCGTGGTTTTCTCTGCCATTACT
CCTCAGGCTGTCCTTGGGACGTCAAATTGATCCTCGTTAGTCCTTTGAGC
TCTGCTTCAAGCGTGACTTCTCCTCACGTGGGATGTATCGGCGTCTAACC
GCGCCGCTGCTCTAGCGTTGGATTTTTGTACTTTGAGAGGGGCGTAACAT
GCGTCCGTCGTATGCATCTATCTGCAAGTTTTATGTCCGCGAAGCTCTTG
TAATGTCCGGAATAGTCCTGGCGTTGCCCCATATGGCAGCAACACCCAGA
CGCTCAAACTTTGATCATGCCGAGAGCTCAGTTTGTATCTCCTTCTTACT
ACGCTTCTTCTCGTTGAGTTATAGTCACTTGACTCATCCGCTTGATTTTG
TTCATGTTGCTAACTACCCTAAGCCACGTCGACTCTTCGCTCTCGTCTTG
GCCCTTTCAAAGCTCAGTGTGCTTTCCCACGGGCATTTGATCATACATCT
TCCTTGGCTTAGTTGACGGCTTGCGTTGACTCAAAAGTAGCGCCCCCCGC
GTTCTCGCCCTAAAGGCAAAGCAACACTTAGCTCCTCATAGAGGCTTTCC
CCTTCCCCATCTTTGCAACTTAAGGACACTCTTGCCAACCACACACCAAT
GCACACATATGACACTCAGGGTTGCTTGGTAGGGCCCGACGTGGGGCGCC
TGGCCAGAGAGCTTAACCCAGCAGCGCCTTGACTCCTTCGCTCCGGTTGT
GGGCGTGTGCGGGTAAAACGAGCGAGAGGGCAACAAGAAACGAAAAGGAG
GTGGGTGTCATGGCATGCTAAGCCAACACCAACACAACGGGAGAGCAGCA
ACTACGTACAGCAAACAAAGCGAGATAGCGGTGCGCTAGCGTGTCCTGGA
TTGATTTGTGCGCGTTTCGTGTATCGTCGTGTGGGTCAGCAATCTATTTT
GAGACATAGAGTTCCTTCGCATCTGCCCGTCGTCACACCCTCCATCAGCA
CCCGCCGCTGTAGAACAAGTCAGAAGTGGATAGTGTGCTTGTGTTCAGGG
TATATTGTTCGTCAGGAGAAGCAACGGTATACCTTGCGTACCCACGTCAA
GCGAACAACAAGATCTTTTCTCCCTCGGCGTGCCTACCAGTTACGTCGAC
GACACACACCCTCTTCGTTTTAAAAACATCGACATCTTGAAGATTTAAAA
TGGTTCGATACCTAAGTGGAAATGGGACTGTCCTCCACCACTCCAATCTC
CGGCGCACTGTCTCGGCCTCCTGTTCCTCATCCTCGTCCTCGTCCTCGTC
CTCGTCAACTAGCACCAGCAGCAAAGACACCAAGAAAGCGCATAATCCCT
CCTCCAGCGGGCTGCCTCCTCCTCCCCTCCCTACCCGGACCTCCACCACC
ACGTCCACCATCAGCAATGCTAGTACCACTGCTACCACCACAGCCCCGGG
ATCCACCTCCACCCTTTCTTCACTTTCACTGGCCGATCTCGGTTTGAGCA
ATCTTAACCTTGCCTTGCTGGGCCGCTCCAATTCTTCCTCCACCTCTTCC
TTCCTCCCCGCTTTGGCAGGAGGTATCCATTCCCCCTATATGCGGCATTT
GCGACGTGAAAGCACCGGCAGCAGTATCAGCAGCATGGGGGGAAGCGAAG
GAGGGCGGGAGGGAGAACGAGGAGGGGGATGTGGAAGCGGGGGCTCCTCG
ACTCGTGTTACGAGAGCTGAATGTGAGAATTGCGGTTTCAAGTTCTTATG
CGCCTGGAGCAAGGGAGGATCAGCTTATTGCTCGTTGGACTGTCGGACCA
CGCATAATCTCCATGGGGTGGAAGACGCCTTCAACCACCTTCCTACCGGT
GGGTCTATCGAGGCCGCCGAGCACTGCTATTCCCTGACGCCTCAGAAGCA
ACAGTATCTGCAGCAGCAGCAGACGGTTGAAGTGTCGCCGGTGGTGCATG
TTGAGGTCCCGGACCAGCCTCAGCTTCAGGGGCATGTTGGGCCGGAAGCA
GTGGTGCCAGTGCCAGCGCCAGCAACAGGAGGCGCAGAGGTAATAGCAGC
GGCGACGATGGCAAATGTTAATACGGATCCCGCCATCACCGTTGTCGACA
CCGCTAGTGGCATCATTAGCAGTTGCAGCAGCAGTATCACCACCACCGAC
GCCACTTTCCTTCCTCGTGAGCCCGGGGTCATCCCCTCGAGTGCTTCCCC
CCTTCCTTTGCAAGCACAACAGCGGCAGCAGGAGCCTGGAAGGCAGCAGG
AGGAAAACACCGCGCCCCCTCCAATTTTATCCCTCCTAGATCCAAATGCG
GTTGTCGCCCTTGGTCCTCGACCTCACGCTTGCCCCACGCCGTCGATGAT
GGTAATGCCCTGCGTCAGCTCCTTCAGCACTAGCAACAACAGCAGCCACA
GCGACAGTGGCGGCATCGAAGGCCAGGCGGCCAGGCCACCTTCCCTGCTT
CCTTCCCTTACTCAACCCCTCCCTGAAAGCAGCAGTGCTACTTGTGGGAG
GGGAAGTGGGCCGTCCCCTTCACTTTTTGACTCGGCGCAAATTGCCTCCC
TGGAACGACGGAGGCATGCAGCCCTCCATCTCCAACCTCCTTCCCTGCAG
GAGGAAGAGCAGCAGCAGCAGCCACTGCAGGACGACGAAGTGCAATGGCC
ACAGCAACAGCAACAGCAGGAGGAGACGGTGTTGGTGCGTCCACAAGCGC
GTTTACCGGCCTCGCGGGCAGTTCTGACAGCGACAACATCTGCTGGTGCC
CTAGACCCCACCGTTCATGCTCAGCAGTCGTTCAAGTCCTTAACTCTGCC
TTGTCTGCCTCGTCACAGCAGCGATAGGGACATGACAGGTGCGTGCCGTC
AGCAGCATCGCCACGAGCAACAGCACCAGCTCCAGCAGCAACAAGAACGG
AAGCAGCATAAGGGGTACCAGCAGCACCAGCAGCGGGAGTCCGCAATAGG
CTCCCCGTTTGAGCGGCTGGCAGCGGCGATTCGGAACGTATAATAAAACG
GACAAGGTGAGGGACGGAGGTGTCGGAGGAGATCGACCCGTACATACAAC
GGGGAGATGGTAGATGAATAGATATAATTTTAAATAATTGGACAGCAACA
AGAGCATGAGCGCGACTAGTAACTTGCCATAAATATGCGTTTGTAAGTAA
ATAAGAGAGAGATTAAGAGAAAATACGGGTCGTTGTGTGAGAAAGGATGA
TAGAAGCTTACAGTTTGAGTTGAGGCGTACTGATTTGACTCGATTTCTAT
TTTGTATTTTTTGTCTTGTGTGTGTCTGATACTTTTTGAGGGATTTATTG
TTTGATATTGATTGCTCAAATATACATACACATATTATCACCACTTATCC
TTCACAAACTTCTTTTTTGGCGATGTACATGCCTGTTTTGACAACCGCGG
TGAGAAAATACACAGAGAGAGGTAGTATTAGAGAGAGAGTCGTAGATTTT
CAATTTTTGAATGTATTCGCCTCAATAGACTGGTCGGAGGGTATTTGTGT
CACTCTGTGTGTATAAGATTGAGTTATGTTTTTTGCCTTTTGCTCGTACA
TCGACCTGCGAGAGAGAGAGAGAGAGAGATCGGTGCGTGTGTAGTTCTGT
GAGTTGAATGTGCGTGCTCATTCCGGCGTCGCCCAAAATGTAGGTCTGTC
TTCTTTTTCAATCATGCACCCGACTTATTATTTTTTAATGAGCAGTTCTC
CTCAACGTTGATGGCAGCAGCGAATCAAGCGCTGATTAAAAAAAAACTTC
GACCGACACCTATGTATGACGTCAAGGTCTGTGTATGGATACCACGGAGA
GGGAATTAAAAACGGGTGTCTGTGGTTACATCACATTATTTTCTTTCCCC
TTCGACTGAAACTTATATATGACGTGAAGGCCATGCATAAACATAACAGA
GGTTGAATTTTATAGATTTTTTTTCCATTGATTTTTTTTTGCCACGCAAC
CTCCCCCCCCAAAAAATCAAAGTGTGCTGCTTGCGTAAGAGCCTGCCAAC
GCGCGATTGGAAAATTATGACATCCTTCTATAGAATAAGCGGACTTTGGA
AAAGTTTCGAGGGAGGGAGAGAGTGATGGAAGAGAAGAGATATGAAAAAT
TACCATAATTTGTTTGACAATTGACCATAAATTTACAGATATGAAACAAA
GGGAGAAATATGGGATAGCTCGGCAAGGACCTACACTATTAAATCATAAT
ATGGTGATAATCTCGATGTTTCCCTGAAGCAAAATAGGGTGACGAAGGAA
GAACATCCAACCATACGAGTGTGGGCACATCACCCCGAGCGCGGATGAAG
CCAAAAACAGGTAAAGAAGCAACATAGGCAAGCGAACCCTCTCCTGAGGC
CGTACATTGTAGCGGTGTTAATCACTTGGTGGGGGGACGGTCATCAATAA
TGAAGGACGAGAAACGTATGAAAAGAAGGAAACTAGATACTAGAACACCA
AAACCA
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protein sequence of NO21G01070.1

>NO21G01070.1-protein ID=NO21G01070.1-protein|Name=NO21G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MVRYLSGNGTVLHHSNLRRTVSASCSSSSSSSSSSSTSTSSKDTKKAHNP
SSSGLPPPPLPTRTSTTTSTISNASTTATTTAPGSTSTLSSLSLADLGLS
NLNLALLGRSNSSSTSSFLPALAGGIHSPYMRHLRRESTGSSISSMGGSE
GGREGERGGGCGSGGSSTRVTRAECENCGFKFLCAWSKGGSAYCSLDCRT
THNLHGVEDAFNHLPTGGSIEAAEHCYSLTPQKQQYLQQQQTVEVSPVVH
VEVPDQPQLQGHVGPEAVVPVPAPATGGAEVIAAATMANVNTDPAITVVD
TASGIISSCSSSITTTDATFLPREPGVIPSSASPLPLQAQQRQQEPGRQQ
EENTAPPPILSLLDPNAVVALGPRPHACPTPSMMVMPCVSSFSTSNNSSH
SDSGGIEGQAARPPSLLPSLTQPLPESSSATCGRGSGPSPSLFDSAQIAS
LERRRHAALHLQPPSLQEEEQQQQPLQDDEVQWPQQQQQQEETVLVRPQA
RLPASRAVLTATTSAGALDPTVHAQQSFKSLTLPCLPRHSSDRDMTGACR
QQHRHEQQHQLQQQQERKQHKGYQQHQQRESAIGSPFERLAAAIRNV*
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Synonyms
Publications