Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:334906..339411 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01070.1 vs.
Match: EWM22602.1 (hypothetical protein Naga_100126g22 [Nannochloropsis gaditana])
HSP 1 Score: 194.1 bits (492), Expect = 1.200e-45
Identity = 127/234 (54.27%), Postives = 153/234 (65.38%), Query Frame = 0
Query: 1 MVRYLSGNGTVLHHSNLRRTVSASCSSSSSSSSSSSTSTSSKDTKKAHNPSSSGLPPPPLPTRTSTTTSTISNASTTATTTAPGSTSTLSSLSLADLGLSNLNLALLGRSNSSSTSSFLPALAGGIHSPYMRHLRRESTGSSISSMGGSEGGREGERGGGCGSGGSSTRVTRAECENCGFKFLCAWSKGGSAYCSLDCRTTHNLHGVEDAFNHLPTGGSIEAAEHCYSLTPQKQ 235
MVRYLSGNG V HH+ LRR+VSAS S S ++ D KK P G+ PPP P R++T AS T+T+++P S++ D GLS+LNL+LLG S SSS L GG SPYMR R++S GSSISSMGGSEGG S RVTRAECENCG+ FLCA+SKGGS YCSLDCRTTHNL+GVEDAFNH+ TG S++AA H +S+TPQ+Q
Sbjct: 1 MVRYLSGNGAVFHHAQLRRSVSAS----------DSPSCTAADQKKETCPG--GILPPPFPGRSATI------ASNTSTSSSP-------SIATTDTGLSHLNLSLLGGSVSSSH------LVGGQASPYMRQARKDSLGSSISSMGGSEGG--------------SPRVTRAECENCGYVFLCAYSKGGSTYCSLDCRTTHNLYGVEDAFNHMVTGTSLDAAAHSFSVTPQRQ 189
The following BLAST results are available for this feature:
BLAST of NO21G01070.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 1.20e-45 / Id = 54.27 Sequence EWM22602.1
Match Name E-value Identity Description
EWM22602.1 1.200e-45 54.27 hypothetical protein Naga_100126g22 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01070.1 ID=NO21G01070.1|Name=NO21G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=4506bp back to top protein sequence of NO21G01070.1
>NO21G01070.1-protein ID=NO21G01070.1-protein|Name=NO21G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp back to top mRNA from alignment at chr21:334906..339411-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01070.1 ID=NO21G01070.1|Name=NO21G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=4506bp|location=Sequence derived from alignment at chr21:334906..339411- (Nannochloropsis oceanica)A
TGGTTCGATACCTAAGTGGAAATGGGACTGTCCTCCACCACTCCAATCTC
CGGCGCACTGTCTCGGCCTCCTGTTCCTCATCCTCGTCCTCGTCCTCGTC
CTCGTCAACTAGCACCAGCAGCAAAGACACCAAGAAAGCGCATAATCCCT
CCTCCAGCGGGCTGCCTCCTCCTCCCCTCCCTACCCGGACCTCCACCACC
ACGTCCACCATCAGCAATGCTAGTACCACTGCTACCACCACAGCCCCGGG
ATCCACCTCCACCCTTTCTTCACTTTCACTGGCCGATCTCGGTTTGAGCA
ATCTTAACCTTGCCTTGCTGGGCCGCTCCAATTCTTCCTCCACCTCTTCC
TTCCTCCCCGCTTTGGCAGGAGGTATCCATTCCCCCTATATGCGGCATTT
GCGACGTGAAAGCACCGGCAGCAGTATCAGCAGCATGGGGGGAAGCGAAG
GAGGGCGGGAGGGAGAACGAGGAGGGGGATGTGGAAGCGGGGGCTCCTCG
ACTCGTGTTACGAGAGCTGAATGTGAGAATTGCGGTTTCAAGTTCTTATG
CGCCTGGAGCAAGGGAGGATCAGCTTATTGCTCGTTGGACTGTCGGACCA
CGCATAATCTCCATGGGGTGGAAGACGCCTTCAACCACCTTCCTACCGGT
GGGTCTATCGAGGCCGCCGAGCACTGCTATTCCCTGACGCCTCAGAAGCA
ACAGTATCTGCAGCAGCAGCAGACGGTTGAAGTGTCGCCGGTGGTGCATG
TTGAGGTCCCGGACCAGCCTCAGCTTCAGGGGCATGTTGGGCCGGAAGCA
GTGGTGCCAGTGCCAGCGCCAGCAACAGGAGGCGCAGAGGTAATAGCAGC
GGCGACGATGGCAAATGTTAATACGGATCCCGCCATCACCGTTGTCGACA
CCGCTAGTGGCATCATTAGCAGTTGCAGCAGCAGTATCACCACCACCGAC
GCCACTTTCCTTCCTCGTGAGCCCGGGGTCATCCCCTCGAGTGCTTCCCC
CCTTCCTTTGCAAGCACAACAGCGGCAGCAGGAGCCTGGAAGGCAGCAGG
AGGAAAACACCGCGCCCCCTCCAATTTTATCCCTCCTAGATCCAAATGCG
GTTGTCGCCCTTGGTCCTCGACCTCACGCTTGCCCCACGCCGTCGATGAT
GGTAATGCCCTGCGTCAGCTCCTTCAGCACTAGCAACAACAGCAGCCACA
GCGACAGTGGCGGCATCGAAGGCCAGGCGGCCAGGCCACCTTCCCTGCTT
CCTTCCCTTACTCAACCCCTCCCTGAAAGCAGCAGTGCTACTTGTGGGAG
GGGAAGTGGGCCGTCCCCTTCACTTTTTGACTCGGCGCAAATTGCCTCCC
TGGAACGACGGAGGCATGCAGCCCTCCATCTCCAACCTCCTTCCCTGCAG
GAGGAAGAGCAGCAGCAGCAGCCACTGCAGGACGACGAAGTGCAATGGCC
ACAGCAACAGCAACAGCAGGAGGAGACGGTGTTGGTGCGTCCACAAGCGC
GTTTACCGGCCTCGCGGGCAGTTCTGACAGCGACAACATCTGCTGGTGCC
CTAGACCCCACCGTTCATGCTCAGCAGTCGTTCAAGTCCTTAACTCTGCC
TTGTCTGCCTCGTCACAGCAGCGATAGGGACATGACAGGTGCGTGCCGTC
AGCAGCATCGCCACGAGCAACAGCACCAGCTCCAGCAGCAACAAGAACGG
AAGCAGCATAAGGGGTACCAGCAGCACCAGCAGCGGGAGTCCGCAATAGG
CTCCCCGTTTGAGCGGCTGGCAGCGGCGATTCGGAACGTATAA back to top Coding sequence (CDS) from alignment at chr21:334906..339411-
>NO21G01070.1 ID=NO21G01070.1|Name=NO21G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr21:334906..339411- (Nannochloropsis oceanica) back to top