NO21G01040, NO21G01040 (gene) Nannochloropsis oceanica

Overview
NameNO21G01040
Unique NameNO21G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2246
Alignment locationchr21:329052..331297 -

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Properties
Property NameValue
DescriptionLipid-binding START
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:329052..331297 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR002913START_lipid-bd_dom
Homology
BLAST of NO21G01040 vs. NCBI_GenBank
Match: EWM22607.1 (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 1.400e-82
Identity = 174/307 (56.68%), Postives = 199/307 (64.82%), Query Frame = 0
Query:    4 PLSHVLRRATAVLALSAFASLFFLTHDDGARQGARFPLISILGLAGASSTELIFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEGQWVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLVKKADPHPVFMQW 311
            PL  VLRRAT VLA +A ASL  LTH D  ++  + PLI++LGLAGAS TE                                                              EG+WVE  SADGR+TTA+ ++ G  GTI LRGQA VDHHI+EVLTVFLNTSLSTEWVSYLDHAEELPT QEN HIIYQFFDMPLPLSDREFL  R V SDR++ TV A Y SVEHASKP+R++VVRGET  T W F    K QT I+V+S+LNPKLP+NGW+VQMMQNTYQRASLL+MLDL+K+A PHP F  W
Sbjct:   47 PLGQVLRRATLVLAAAACASLLVLTHGD-VQEVGKLPLITLLGLAGASFTE----------EPASVGASRADSLSAVVGRTSVGVQIPPSSTQTQAKSLGRGSRQVTEGEDGGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW 342          
BLAST of NO21G01040 vs. NCBI_GenBank
Match: CBJ33104.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.8 bits (268), Expect = 6.000e-20
Identity = 60/202 (29.70%), Postives = 99/202 (49.01%), Query Frame = 0
Query:  116 EEGQWVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTH-------IIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLVKKADPHPVFMQW 311
            EE    E     G   T   +  GS  ++ LRG+  VD HI  + T FLNT+ + +WV +L   EELPT   +         +++Q +DMP P+ DRE +  R V  D++ K ++A Y+S +H ++P     VR   + T W    L   +T IE ++  +PK  +   +V  +Q  + R ++   +   +  + HP   +W
Sbjct:   61 EESIAWELVEDSGGFRTFSSRVQGS-SSLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRLDKRAKKMIASYQSTDHPARPITSATVRAIVYRTSWILTSLGSSKTSIEFETRTDPKGSLPSAMVGFLQVKFPRETVAGFVSSARNVELHPAMTKW 261          
BLAST of NO21G01040 vs. NCBI_GenBank
Match: SMF29914.1 (START domain-containing protein [Pseudobacteriovorax antillogorgiicola])

HSP 1 Score: 80.5 bits (197), Expect = 1.000e-11
Identity = 54/187 (28.88%), Postives = 90/187 (48.13%), Query Frame = 0
Query:  119 QWVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNV-VRGETHNTFWKFRVL---NKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLVKKA 302
            QW +    DG   + Y K        G+ G AL+D   S+++ V ++     +WV     A  + T    T I Y  F MP P+SDR+F++    +    R  +    +SVEH S P+  +V VRGE      K+R+    N +QT +EV+   +PK  +  W+V ++Q  +   ++  +   V+K+
Sbjct:   27 QWEQVKVEDG--ISVYRKSFEDSNVKGVAGAALIDAPASKIVWVLMDHEHKDDWVDKFRDARTIETPSRLTSIQYAAFSMPFPVSDRDFVYAYEFQYHSNRNMIEVDVKSVEHKSAPEDDSVGVRGEI--IMGKYRLYPSKNGKQTYVEVEYLADPKGLLPSWIVNIVQKNWPYKTIKGLRKQVQKS 209          
BLAST of NO21G01040 vs. NCBI_GenBank
Match: OUR96712.1 (hypothetical protein A9Q84_10240 [Halobacteriovorax marinus])

HSP 1 Score: 71.6 bits (174), Expect = 4.700e-9
Identity = 50/183 (27.32%), Postives = 91/183 (49.73%), Query Frame = 0
Query:  120 WVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYR--SVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLVKK 301
            W E    +G   T Y  +      +  +G+ +++    ++L V  +     +WV  LD  +EL    +   +IYQ F MPL +S+R+ ++  R    R ++T V K+   SVEHA  P+    VR E  N+ +  + L+  +T++ V+   +PK  +  W+V ++Q ++   +L  +   VKK
Sbjct:   23 WDEINQEEG--ITVYSAEVPDNPLVAFKGKVIIEAPAKKILWVLADRKHRRDWVDRLDINDELEIISKVERVIYQSFKMPLFISNRDMVY--RSVLSRNKETGVYKFHLFSVEHAKAPETIG-VRAELVNSSYLVKPLSANKTEVTVEILSDPKGLLPAWLVNLIQKSWPLKTLRGLRTQVKK 200          
BLAST of NO21G01040 vs. NCBI_GenBank
Match: WP_084191104.1 (hypothetical protein [Methylomarinum vadi])

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-8
Identity = 36/157 (22.93%), Postives = 80/157 (50.96%), Query Frame = 0
Query:  144 IGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLVKK 301
            +  +G  ++ H ++++++V  +   + +W++ +  A+ +      T I Y    +P  L+DR+F+F+        R+ ++    SVEH  KP R N+VRG    ++ K R L   +T +E+    +PK  +  W+V ++   +   ++  + + +K+
Sbjct:   49 VAFKGVDILHHSMTDIISVLSDIEKADQWINGMVEADIVEILGPTTRIDYNRQHLPWSLNDRDFVFKITTRLSDDRQQIIFDLASVEHEQKPIRPNIVRGHLLKSYLKLRALAANKTALEIMMLADPKGALPVWLVNLVNRQWAPNTINGLRNYLKQ 205          
BLAST of NO21G01040 vs. NCBI_GenBank
Match: PIP93230.1 (hypothetical protein COW78_16590 [Bdellovibrio sp. CG22_combo_CG10-13_8_21_14_all_39_27] >PIQ59294.1 hypothetical protein COW00_11235 [Bdellovibrio sp. CG12_big_fil_rev_8_21_14_0_65_39_13] >PIR32305.1 hypothetical protein COV37_20525 [Bdellovibrio sp. CG11_big_fil_rev_8_21_14_0_20_39_38] >PJB52544.1 hypothetical protein CO099_12035 [Bdellovibrio sp. CG_4_9_14_3_um_filter_39_7])

HSP 1 Score: 65.1 bits (157), Expect = 4.400e-7
Identity = 40/165 (24.24%), Postives = 77/165 (46.67%), Query Frame = 0
Query:  119 QWVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQ 284
            +W  ++  D  I   Y       G + ++GQ + +H ISE+L++  +T     WV YL  +  +        + Y  ++ P P  DR F+ +   + ++++K V    +S++H   P+  N VRG T+    + R +   +T  E+    +    +  W+V M+Q
Sbjct:   27 KWEIASQTDDII--VYKAPKHESGVVPIKGQTVFNHSISEILSLIADTPKKINWVPYLKESYLVDAVNPFRRVEYARYNSPWPFEDRVFVLDIEGDYNKEKKEVFIALKSIDHPKIPKDDNSVRGMTYYGAIRIRDMGINKTYFEIVLLSDFAGNVPHWIVNMVQ 189          
BLAST of NO21G01040 vs. NCBI_GenBank
Match: WP_065675761.1 (hypothetical protein [Vibrio celticus] >SBT12297.1 START domain protein [Vibrio celticus])

HSP 1 Score: 64.3 bits (155), Expect = 7.600e-7
Identity = 38/152 (25.00%), Postives = 71/152 (46.71%), Query Frame = 0
Query:  147 RGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLV 299
            R +A +  +++ ++ +F +TS+ T+WV  +D  EE+    E   +   +   P P+SDRE + E  +E D    TV+       H      K +VR     + W  + L+   T I  Q   +P   I  W++ M+  +    +LL + +++
Sbjct:   50 RAEADIQANLTSIIALFTDTSVGTQWVENIDEMEEIEHFSEVHTVTKTYTKAPWPVSDREAIVENFIEQDPDALTVMITQHGRPHYQPNNDKRIVRVAHLESRWILKPLDNNTTHISYQVLSDPGGSIPSWLINMVAVSQPYKTLLGLSEML 201          
The following BLAST results are available for this feature:
BLAST of NO21G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22607.11.400e-8256.68Lipid-binding START [Nannochloropsis gaditana][more]
CBJ33104.16.000e-2029.70conserved unknown protein [Ectocarpus siliculosus][more]
SMF29914.11.000e-1128.88START domain-containing protein [Pseudobacteriovor... [more]
OUR96712.14.700e-927.32hypothetical protein A9Q84_10240 [Halobacteriovora... [more]
WP_084191104.11.100e-822.93hypothetical protein [Methylomarinum vadi][more]
PIP93230.14.400e-724.24hypothetical protein COW78_16590 [Bdellovibrio sp.... [more]
WP_065675761.17.600e-725.00hypothetical protein [Vibrio celticus] >SBT12297.1... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004676NSK004676Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01040.2NO21G01040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G01040.1NO21G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602361gene_8060Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100126g16gene7832Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01040.2NO21G01040.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G01040.1NO21G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01040 ID=NO21G01040|Name=NO21G01040|organism=Nannochloropsis oceanica|type=gene|length=2246bp
CAGGCAAACTTCCCATTCGTCCTTGCTGTTCTACCTTTCATCAGCCAAGC
TGCAAGAACTTGGAAGCGGATCAAAGCAACGTCTGCCTGCCCTCTGGTCG
CAGCAGCAGCCAACAGCACTTCTTACTCCAGCCACTACACAATCCCCAAC
AACACCGTCCAGTCGCTCGACCAATCAAACACAAACGTTTTAAATTTGGC
ACGGATGGTAACACCTCTCAGCCATGTCCTACGCAGgtacgtgtgggtcg
tctgggtgtgctgtgctagctgttcttggatgcaagaaggcctcccttcc
ctgggacaagggtaggatcctcccttatcgttctgtgagctatataaagc
gaataccgtaataagttgacaaaagtttcctgtccataggcctctgtagg
ctgtctatgcgcaatcaatcattcattccttctcctcccatccaccccaa
ttaacaacctccaaaacactcacagAGCCACTGCCGTCCTTGCCCTCTCC
GCCTTTGCCAGTCTCTTTTTCCTCACCCACGACGATGGTGCCCGACAAGG
CGCAAGATTTCCCTTAATCTCCATTCTGGGGCTGGCCGGTGCTTCTTCAA
CTGAGTTAATTTTCCTAGGAGCAGCAGCAGCACCAGCACCAGCAGATATG
GATTCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGAGGAGGAGGAGG
CAAAACGACCATAACGAAGAGAGAAAAGAGACAACTAGAGAAAAAGCGAA
AAAGGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGGAGGAGGGGCAG
TGGGTGGAAAGTACGTCAGCTGACGGGCGTATCACAACGGCCTACCTGAA
ACAAGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACAGgtaattgtgg
gagggagggagtatgtgtgtgggagagagagagaaaaaaaaggcggaata
aactcagctctgtgcgggactctcaccatccctccctcattcctcttttc
cttccccttttcctccttcttttccttcctccccttcttcccttctatct
gcagGCCCTTGTCGACCACCACATTTCTGAGGTCCTCACCGTCTTCTTGA
ACACCTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCATGCGGAAGAG
CTGCCAACGTCGCAGGAGAACACTCACATCATCTATCAGTTTTTTGACAT
GCCCTTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAGGGTGGAGA
GCGACCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTGTGGAGCAC
GCCAGCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAGTAAGTGGAAGAAG
CTTCGGAAGAAGGAAAAGACAGAGGGAGGGAAAGAGAAGGAGAGGGAGGG
AGGGAGAGGAGGGCGTTAGTACTTTTGGATGCATTGACATATTGCACCCC
ATACATCTCCCACCGACTCACCCTCCCTCTCCCCCTCCCTTCCTCGCTGC
CTGCCTCATTTTCAACCAGGAAACCCACAACACCTTCTGGAAGTTCCGCG
TTCTCAACAAGCGACAAACGCAAATAGAGGTCCAATCAACGCTCAATCCC
AAGCTACCCATCAACGGGTGGGTGGTACAGATGATGCAGAACACCTACCA
GCGAGCCTCGCTCCTGTCAATGCTGGATTTGGTGAAAAAAGCGGATCCGC
ACCCCGTGTTTATGCAGTGGTAGTGTCAGAAAAAATTGGAATATAGGGAG
GAAGCGGGGGAAAGAAGATGCGAGGCAGGCGAAGGAGGCGCACAGGGTGC
ATTTGGTGATTCGTATAAATCAAAGGGGAAATGAGAAGATAGGTCAATCT
GCTGCGCCTTCCTCGTGGCGAGGAGATTAGGGTCGGGGTTTCCCGTAATT
AATTGAACTGCCTCATGGCCACAACCTTGACCTCGTTTGCGATCGGAGGA
AAGGAGGGGCAAGGATTCATGCCCGGCTTAGTTTCCTTCTCTCTGTATCT
GAAAGGAGAGAGGGGAGGGGGGATGGGATGTTGATTGGTCTTTATTGGTT
TGCCGCTACTACTGAGAGACAGGTGAGGTGATGAAGGGTGGGTGTGAGTA
AAGTAACATGTGCCTCTCACTCCTACCTCCTTTCGCGCGGCCGTACATGC
GATGTAGATTAGGAAAAGACAGGAAGGTAAGCATTTACATCATATGAAAG
GAAAAGGAAATACGTAGATAAAAAGTGAATATTTACATGTACATAC
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protein sequence of NO21G01040.2

>NO21G01040.2-protein ID=NO21G01040.2-protein|Name=NO21G01040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MVTPLSHVLRRATAVLALSAFASLFFLTHDDGARQGARFPLISILGLAGA
SSTELIFLGAAAAPAPADMDSAAAVTAAAGGGGGGGKTTITKREKRQLEK
KRKREEQEAKRNKEVEEGQWVESTSADGRITTAYLKQAGSKGTIGLRGQA
LVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPL
PLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGVSGRSFG
RRKRQREGKRRRGREGEEGVSTFGCIDILHPIHLPPTHPPSPPPFLAACL
IFNQETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRA
SLLSMLDLVKKADPHPVFMQW*
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protein sequence of NO21G01040.1

>NO21G01040.1-protein ID=NO21G01040.1-protein|Name=NO21G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MVTPLSHVLRRATAVLALSAFASLFFLTHDDGARQGARFPLISILGLAGA
SSTELIFLGAAAAPAPADMDSAAAVTAAAGGGGGGGKTTITKREKRQLEK
KRKREEQEAKRNKEVEEGQWVESTSADGRITTAYLKQAGSKGTIGLRGQA
LVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPL
PLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGETHNTFW
KFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRASLLSMLDLVKK
ADPHPVFMQW*
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Synonyms
Publications