NO21G01040.2, NO21G01040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01040.2
Unique NameNO21G01040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1843
Alignment locationchr21:329052..331297 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:329052..331297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01040.2 vs.
Match: EWM22607.1 (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 225.7 bits (574), Expect = 2.400e-55
Identity = 139/240 (57.92%), Postives = 162/240 (67.50%), Query Frame = 0 
Query:    4 PLSHVLRRATAVLALSAFASLFFLTHDDGARQGARFPLISILGLAGASSTELIFLGAAAAPAPADMDSAAAVTAAAGGGGGGGKTTITKREKRQLEKKRKREEQEAKRNKEVEEGQWVESTSADGRITTAYLKQAGSKGTIGLRGQALVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPLPLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRG 244
            PL  VLRRAT VLA +A ASL  LTH D    G + PLI++LGLAGAS TE         PA      A +++A  G    G    I     +   K   R  ++    ++  EG+WVE  SADGR+TTA+ ++ G  GTI LRGQA VDHHI+EVLTVFLNTSLSTEWVSYLDHAEELPT QEN HIIYQFFDMPLPLSDREFL  R V SDR++ TV A Y SVEHASKP+R++VVRG
Sbjct:   47 PLGQVLRRATLVLAAAACASLLVLTHGDVQEVG-KLPLITLLGLAGASFTE--------EPASVGASRADSLSAVVGRTSVG--VQIPPSSTQTQAKSLGRGSRQVTEGEDGGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRG 275
The following BLAST results are available for this feature:
BLAST of NO21G01040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22607.12.400e-5557.92Lipid-binding START [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01040NO21G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01040.2NO21G01040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01040.2.cds1NO21G01040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01040.2.cds2NO21G01040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01040.2.cds3NO21G01040.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01040.2 ID=NO21G01040.2|Name=NO21G01040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp
CAGGCAAACTTCCCATTCGTCCTTGCTGTTCTACCTTTCATCAGCCAAGC
TGCAAGAACTTGGAAGCGGATCAAAGCAACGTCTGCCTGCCCTCTGGTCG
CAGCAGCAGCCAACAGCACTTCTTACTCCAGCCACTACACAATCCCCAAC
AACACCGTCCAGTCGCTCGACCAATCAAACACAAACGTTTTAAATTTGGC
ACGGATGGTAACACCTCTCAGCCATGTCCTACGCAGAGCCACTGCCGTCC
TTGCCCTCTCCGCCTTTGCCAGTCTCTTTTTCCTCACCCACGACGATGGT
GCCCGACAAGGCGCAAGATTTCCCTTAATCTCCATTCTGGGGCTGGCCGG
TGCTTCTTCAACTGAGTTAATTTTCCTAGGAGCAGCAGCAGCACCAGCAC
CAGCAGATATGGATTCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGA
GGAGGAGGAGGCAAAACGACCATAACGAAGAGAGAAAAGAGACAACTAGA
GAAAAAGCGAAAAAGGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGG
AGGAGGGGCAGTGGGTGGAAAGTACGTCAGCTGACGGGCGTATCACAACG
GCCTACCTGAAACAAGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACA
GGCCCTTGTCGACCACCACATTTCTGAGGTCCTCACCGTCTTCTTGAACA
CCTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCATGCGGAAGAGCTG
CCAACGTCGCAGGAGAACACTCACATCATCTATCAGTTTTTTGACATGCC
CTTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAGGGTGGAGAGCG
ACCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTGTGGAGCACGCC
AGCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAGTAAGTGGAAGAAGCTT
CGGAAGAAGGAAAAGACAGAGGGAGGGAAAGAGAAGGAGAGGGAGGGAGG
GAGAGGAGGGCGTTAGTACTTTTGGATGCATTGACATATTGCACCCCATA
CATCTCCCACCGACTCACCCTCCCTCTCCCCCTCCCTTCCTCGCTGCCTG
CCTCATTTTCAACCAGGAAACCCACAACACCTTCTGGAAGTTCCGCGTTC
TCAACAAGCGACAAACGCAAATAGAGGTCCAATCAACGCTCAATCCCAAG
CTACCCATCAACGGGTGGGTGGTACAGATGATGCAGAACACCTACCAGCG
AGCCTCGCTCCTGTCAATGCTGGATTTGGTGAAAAAAGCGGATCCGCACC
CCGTGTTTATGCAGTGGTAGTGTCAGAAAAAATTGGAATATAGGGAGGAA
GCGGGGGAAAGAAGATGCGAGGCAGGCGAAGGAGGCGCACAGGGTGCATT
TGGTGATTCGTATAAATCAAAGGGGAAATGAGAAGATAGGTCAATCTGCT
GCGCCTTCCTCGTGGCGAGGAGATTAGGGTCGGGGTTTCCCGTAATTAAT
TGAACTGCCTCATGGCCACAACCTTGACCTCGTTTGCGATCGGAGGAAAG
GAGGGGCAAGGATTCATGCCCGGCTTAGTTTCCTTCTCTCTGTATCTGAA
AGGAGAGAGGGGAGGGGGGATGGGATGTTGATTGGTCTTTATTGGTTTGC
CGCTACTACTGAGAGACAGGTGAGGTGATGAAGGGTGGGTGTGAGTAAAG
TAACATGTGCCTCTCACTCCTACCTCCTTTCGCGCGGCCGTACATGCGAT
GTAGATTAGGAAAAGACAGGAAGGTAAGCATTTACATCATATGAAAGGAA
AAGGAAATACGTAGATAAAAAGTGAATATTTACATGTACATAC
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protein sequence of NO21G01040.2

>NO21G01040.2-protein ID=NO21G01040.2-protein|Name=NO21G01040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MVTPLSHVLRRATAVLALSAFASLFFLTHDDGARQGARFPLISILGLAGA
SSTELIFLGAAAAPAPADMDSAAAVTAAAGGGGGGGKTTITKREKRQLEK
KRKREEQEAKRNKEVEEGQWVESTSADGRITTAYLKQAGSKGTIGLRGQA
LVDHHISEVLTVFLNTSLSTEWVSYLDHAEELPTSQENTHIIYQFFDMPL
PLSDREFLFERRVESDRKRKTVVAKYRSVEHASKPQRKNVVRGVSGRSFG
RRKRQREGKRRRGREGEEGVSTFGCIDILHPIHLPPTHPPSPPPFLAACL
IFNQETHNTFWKFRVLNKRQTQIEVQSTLNPKLPINGWVVQMMQNTYQRA
SLLSMLDLVKKADPHPVFMQW*
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mRNA from alignment at chr21:329052..331297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01040.2 ID=NO21G01040.2|Name=NO21G01040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2246bp|location=Sequence derived from alignment at chr21:329052..331297- (Nannochloropsis oceanica)
CAGGCAAACTTCCCATTCGTCCTTGCTGTTCTACCTTTCATCAGCCAAGC
TGCAAGAACTTGGAAGCGGATCAAAGCAACGTCTGCCTGCCCTCTGGTCG
CAGCAGCAGCCAACAGCACTTCTTACTCCAGCCACTACACAATCCCCAAC
AACACCGTCCAGTCGCTCGACCAATCAAACACAAACGTTTTAAATTTGGC
ACGGATGGTAACACCTCTCAGCCATGTCCTACGCAGGTACGTGTGGGTCG
TCTGGGTGTGCTGTGCTAGCTGTTCTTGGATGCAAGAAGGCCTCCCTTCC
CTGGGACAAGGGTAGGATCCTCCCTTATCGTTCTGTGAGCTATATAAAGC
GAATACCGTAATAAGTTGACAAAAGTTTCCTGTCCATAGGCCTCTGTAGG
CTGTCTATGCGCAATCAATCATTCATTCCTTCTCCTCCCATCCACCCCAA
TTAACAACCTCCAAAACACTCACAGAGCCACTGCCGTCCTTGCCCTCTCC
GCCTTTGCCAGTCTCTTTTTCCTCACCCACGACGATGGTGCCCGACAAGG
CGCAAGATTTCCCTTAATCTCCATTCTGGGGCTGGCCGGTGCTTCTTCAA
CTGAGTTAATTTTCCTAGGAGCAGCAGCAGCACCAGCACCAGCAGATATG
GATTCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGAGGAGGAGGAGG
CAAAACGACCATAACGAAGAGAGAAAAGAGACAACTAGAGAAAAAGCGAA
AAAGGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGGAGGAGGGGCAG
TGGGTGGAAAGTACGTCAGCTGACGGGCGTATCACAACGGCCTACCTGAA
ACAAGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACAGGTAATTGTGG
GAGGGAGGGAGTATGTGTGTGGGAGAGAGAGAGAAAAAAAAGGCGGAATA
AACTCAGCTCTGTGCGGGACTCTCACCATCCCTCCCTCATTCCTCTTTTC
CTTCCCCTTTTCCTCCTTCTTTTCCTTCCTCCCCTTCTTCCCTTCTATCT
GCAGGCCCTTGTCGACCACCACATTTCTGAGGTCCTCACCGTCTTCTTGA
ACACCTCCTTGAGCACGGAATGGGTCTCCTACCTTGATCATGCGGAAGAG
CTGCCAACGTCGCAGGAGAACACTCACATCATCTATCAGTTTTTTGACAT
GCCCTTGCCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAGGGTGGAGA
GCGACCGGAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTGTGGAGCAC
GCCAGCAAGCCCCAGAGGAAAAACGTAGTGCGAGGAGTAAGTGGAAGAAG
CTTCGGAAGAAGGAAAAGACAGAGGGAGGGAAAGAGAAGGAGAGGGAGGG
AGGGAGAGGAGGGCGTTAGTACTTTTGGATGCATTGACATATTGCACCCC
ATACATCTCCCACCGACTCACCCTCCCTCTCCCCCTCCCTTCCTCGCTGC
CTGCCTCATTTTCAACCAGGAAACCCACAACACCTTCTGGAAGTTCCGCG
TTCTCAACAAGCGACAAACGCAAATAGAGGTCCAATCAACGCTCAATCCC
AAGCTACCCATCAACGGGTGGGTGGTACAGATGATGCAGAACACCTACCA
GCGAGCCTCGCTCCTGTCAATGCTGGATTTGGTGAAAAAAGCGGATCCGC
ACCCCGTGTTTATGCAGTGGTAGTGTCAGAAAAAATTGGAATATAGGGAG
GAAGCGGGGGAAAGAAGATGCGAGGCAGGCGAAGGAGGCGCACAGGGTGC
ATTTGGTGATTCGTATAAATCAAAGGGGAAATGAGAAGATAGGTCAATCT
GCTGCGCCTTCCTCGTGGCGAGGAGATTAGGGTCGGGGTTTCCCGTAATT
AATTGAACTGCCTCATGGCCACAACCTTGACCTCGTTTGCGATCGGAGGA
AAGGAGGGGCAAGGATTCATGCCCGGCTTAGTTTCCTTCTCTCTGTATCT
GAAAGGAGAGAGGGGAGGGGGGATGGGATGTTGATTGGTCTTTATTGGTT
TGCCGCTACTACTGAGAGACAGGTGAGGTGATGAAGGGTGGGTGTGAGTA
AAGTAACATGTGCCTCTCACTCCTACCTCCTTTCGCGCGGCCGTACATGC
GATGTAGATTAGGAAAAGACAGGAAGGTAAGCATTTACATCATATGAAAG
GAAAAGGAAATACGTAGATAAAAAGTGAATATTTACATGTACATAC
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Coding sequence (CDS) from alignment at chr21:329052..331297-

>NO21G01040.2 ID=NO21G01040.2|Name=NO21G01040.2|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr21:329052..331297- (Nannochloropsis oceanica)
ATGGTAACACCTCTCAGCCATGTCCTACGCAGAGCCACTGCCGTCCTTGC
CCTCTCCGCCTTTGCCAGTCTCTTTTTCCTCACCCACGACGATGGTGCCC
GACAAGGCGCAAGATTTCCCTTAATCTCCATTCTGGGGCTGGCCGGTGCT
TCTTCAACTGAGTTAATTTTCCTAGGAGCAGCAGCAGCACCAGCACCAGC
AGATATGGATTCTGCAGCAGCAGTAACAGCAGCAGCAGGAGGAGGAGGAG
GAGGAGGCAAAACGACCATAACGAAGAGAGAAAAGAGACAACTAGAGAAA
AAGCGAAAAAGGGAGGAGCAGGAGGCGAAACGCAACAAGGAGGTGGAGGA
GGGGCAGTGGGTGGAAAGTACGTCAGCTGACGGGCGTATCACAACGGCCT
ACCTGAAACAAGCCGGAAGCAAGGGCACCATCGGTTTAAGGGGACAGGCC
CTTGTCGACCACCACATTTCTGAGGTCCTCACCGTCTTCTTGAACACCTC
CTTGAGCACGGAATGGGTCTCCTACCTTGATCATGCGGAAGAGCTGCCAA
CGTCGCAGGAGAACACTCACATCATCTATCAGTTTTTTGACATGCCCTTG
CCCTTGAGCGATCGGGAATTCTTGTTTGAGCGGAGGGTGGAGAGCGACCG
GAAACGGAAGACGGTGGTGGCCAAGTACAGGAGTGTGGAGCACGCCAGCA
AGCCCCAGAGGAAAAACGTAGTGCGAGGAGTAAGTGGAAGAAGCTTCGGA
AGAAGGAAAAGACAGAGGGAGGGAAAGAGAAGGAGAGGGAGGGAGGGAGA
GGAGGGCGTTAGTACTTTTGGATGCATTGACATATTGCACCCCATACATC
TCCCACCGACTCACCCTCCCTCTCCCCCTCCCTTCCTCGCTGCCTGCCTC
ATTTTCAACCAGGAAACCCACAACACCTTCTGGAAGTTCCGCGTTCTCAA
CAAGCGACAAACGCAAATAGAGGTCCAATCAACGCTCAATCCCAAGCTAC
CCATCAACGGGTGGGTGGTACAGATGATGCAGAACACCTACCAGCGAGCC
TCGCTCCTGTCAATGCTGGATTTGGTGAAAAAAGCGGATCCGCACCCCGT
GTTTATGCAGTGGTAG
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Synonyms
Publications