NO21G00940, NO21G00940 (gene) Nannochloropsis oceanica

Overview
NameNO21G00940
Unique NameNO21G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length995
Alignment locationchr21:307804..308798 -

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Properties
Property NameValue
DescriptionAminotransferase class i and ii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:307804..308798 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Homology
BLAST of NO21G00940 vs. NCBI_GenBank
Match: EWM22608.1 (aminotransferase class i and ii [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 4.900e-69
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0
Query:   62 YDPLFDDVPDRRNTSSLKWSKYGDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEGEGG 204
            Y+PLFDD PDRR TSSLKW+KYG +ILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVP+EEVT  VIKYL+RTAHY++EP+WIVWSHGLVPALTVAARMAGG GDSVMTNTPIYPPFLWTPKTADM TLQVPL+F+ + G
Sbjct:   39 YNPLFDDAPDRRATSSLKWTKYGPDILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPREEVTQAVIKYLERTAHYKVEPEWIVWSHGLVPALTVAARMAGGAGDSVMTNTPIYPPFLWTPKTADMQTLQVPLRFDEDLG 180          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: OIP98302.1 (aspartate aminotransferase [Syntrophobacteraceae bacterium CG2_30_61_12])

HSP 1 Score: 153.3 bits (386), Expect = 8.700e-34
Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = 0
Query:   66 FDDVPDRRNTSSLKWSKYGD-EILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEGE 202
            FD + DRR T+S KW KY D +++PLWVADMDF +P+ V+DA+  R +HGVYGY++P  E+   V+ YL    ++ I PDW+VW  GLV  L V +RM G PGD VMT TPIYP F+  P       ++VPL  +GE
Sbjct:   16 FDAIVDRRGTASQKWEKYKDRDVIPLWVADMDFVSPRAVVDALRDRVDHGVYGYTLPPLELAEAVLAYLASRYNWTISPDWLVWLPGLVTGLNVCSRMIGRPGDQVMTATPIYPAFMTAPVNQQRELVKVPLVLDGE 152          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: WP_028455998.1 (putative C-S lyase [Chitinilyticum litopenaei])

HSP 1 Score: 152.5 bits (384), Expect = 1.500e-33
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 0
Query:   70 PDRRNTSSLKWSKYGD-EILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEGEGGGGNGGW 210
            PDRR T+SLKW KY D +ILPLWVADMDF AP  V+ A+H R  HGV GY  P E +    I Y  R   +QI+PDW+VW  GLV  L +A R  G PGD+V+T TP+YPPFL  P  A  T + VPL  +    GG  GW
Sbjct:    6 PDRRLTASLKWDKYRDRDILPLWVADMDFAAPPAVLAALHERIAHGVLGYGNPPESLPAAFIDYAARHYGWQIDPDWLVWLPGLVQGLNLACRAVGEPGDAVLTATPVYPPFLRAPGLAGRTLITVPLAEQ----GGRWGW 142          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: KPJ78609.1 (aspartate aminotransferase [Deltaproteobacteria bacterium SG8_13])

HSP 1 Score: 152.1 bits (383), Expect = 1.900e-33
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 0
Query:   66 FDDVPDRRNTSSLKWSKY-GDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEG 201
            FD+V DRR+TSS KW KY G +ILPLWVADMDFR+P  V+DA+  RA+HGV+GYS P  E+T EV + L    +++++  WIVW  GLV  L V+ R  G  GD VMT TP+YPPFL  P  ++     VPL   G
Sbjct:    7 FDEVIDRRSTSSAKWDKYAGKDILPLWVADMDFRSPPAVVDALKQRADHGVFGYSQPPMELTREVARMLASRYNWRVDERWIVWIPGLVTGLNVSCRAVGESGDGVMTATPVYPPFLTAPGFSNRKLATVPLAKNG 142          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: WP_078790076.1 (putative C-S lyase [Geobacter thiogenes] >SJZ84007.1 cystathione beta-lyase [Geobacter thiogenes])

HSP 1 Score: 151.4 bits (381), Expect = 3.300e-33
Identity = 66/132 (50.00%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   66 FDDVPDRRNTSSLKWSKY-GDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPL 197
            FD + DRR+T+S KW +Y G +++PLWVADMDFR+P  V++A+  R EHGV+GYS P +E+   V+  L++   +Q++PDW+VW  GLV  L V  R  G PGD+V T TP+YPPFL  P  A+   + VPL
Sbjct:    4 FDTLIDRRHTASEKWDRYAGQDVIPLWVADMDFRSPPAVLEALQQRVEHGVFGYSSPPKELIAVVLAMLQQEYRWQVQPDWLVWLPGLVCGLNVTCRAVGAPGDAVATFTPVYPPFLTAPGLAERDLISVPL 135          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: OIP07768.1 (aspartate aminotransferase [Betaproteobacteria bacterium CG2_30_68_42] >PIV73408.1 aspartate aminotransferase [Rhodocyclales bacterium CG17_big_fil_post_rev_8_21_14_2_50_68_7])

HSP 1 Score: 151.0 bits (380), Expect = 4.300e-33
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = 0
Query:   64 PLFDDVPDRRNTSSLKWSKYGD-EILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLK 198
            P FD   +R    SLKW++YG  ++LP+WVADMDFRAP+ V+DA+H R EHGV+GY+ P   +   V++ L R   ++IEPDW++W  GLV  L VA R  G PGD+V+T TPIYPPFL  P+ A       PL+
Sbjct:    5 PDFDAPAERHGGDSLKWNRYGGRDVLPMWVADMDFRAPEAVLDALHRRVEHGVFGYARPWASLVEAVVEALARDHRWRIEPDWLIWLPGLVTGLNVACRAVGEPGDAVLTCTPIYPPFLSAPRHAARVLATAPLE 139          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: WP_012528497.1 (putative C-S lyase [Geobacter bemidjiensis] >ACH37087.1 pyridoxal-5'-phosphate-dependent enzyme [Geobacter bemidjiensis Bem])

HSP 1 Score: 150.2 bits (378), Expect = 7.400e-33
Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 0
Query:   66 FDDVPDRRNTSSLKWSKYGD-EILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEGEGGGG 206
            FD++ DRR TSS KW KY D +I+PLWVADMDFR+P  VIDA+H R  HGV+GY+ P E +   V++ L+    +Q+  +WIVW  GLV  L V+ R  G  GD V+T TP+YPPF+  P  +    ++VPL+ E EG  G
Sbjct:    7 FDEIIDRRGTSSEKWDKYRDRDIIPLWVADMDFRSPPAVIDALHERVSHGVFGYTAPSESLVEAVLQSLRDEFGWQVAKEWIVWLPGLVTGLNVSCRAVGAAGDDVITLTPVYPPFMSAPPLSGRNAIKVPLRCE-EGRWG 146          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: AQT68929.1 (Cystathionine beta-lyase PatB [Phycisphaerae bacterium ST-NAGAB-D1])

HSP 1 Score: 150.2 bits (378), Expect = 7.400e-33
Identity = 68/135 (50.37%), Postives = 91/135 (67.41%), Query Frame = 0
Query:   63 DPLFDDVPDRRNTSSLKWSKY-GDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPL 197
            D +FD V DR  +SSLKW +Y G +I+P+WVADMDF AP  VI A+H R +HGV+GY++P  E+T  +++YL     +QIEP WIVW  GLV  + VA+R  G  G+ ++T TP YPPFL  P  +D   + VPL
Sbjct:    2 DSVFDKVVDRSCSSSLKWDRYKGRDIIPMWVADMDFEAPPAVIQALHTRVDHGVFGYTLPPAELTNTILEYLADEFSWQIEPGWIVWLPGLVTGINVASRSTGESGNEIITFTPAYPPFLDAPGLSDRKNVTVPL 136          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: WP_012471008.1 (pyridoxal phosphate-dependent aminotransferase [Geobacter lovleyi] >ACD96683.1 aminotransferase class I and II [Geobacter lovleyi SZ])

HSP 1 Score: 149.1 bits (375), Expect = 1.600e-32
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 0
Query:   66 FDDVPDRRNTSSLKWSKY-GDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPL 197
            FD V DRRNT S KW +Y G +I+PLWVADMDFR+P  V++A+  R EHGV+GYS P EE+   V+  L++   +Q++  W+VW  GLV  L V+ R  G PGD+V T TP+YPPFL  P  A    + VPL
Sbjct:    4 FDTVIDRRNTGSEKWDRYAGQDIIPLWVADMDFRSPPAVLEALQQRVEHGVFGYSRPPEELVAVVLAMLRQEYGWQVQSKWLVWLPGLVCGLNVSCRAVGAPGDAVATFTPVYPPFLTAPGLAGRELISVPL 135          
BLAST of NO21G00940 vs. NCBI_GenBank
Match: WP_091196771.1 (putative C-S lyase [Formivibrio citricus] >SFN85122.1 cystathione beta-lyase [Formivibrio citricus])

HSP 1 Score: 149.1 bits (375), Expect = 1.600e-32
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0
Query:   66 FDDVPDRRNTSSLKWSKY-GDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPL 197
            FD V  R+ TSSLKW KY G ++LPLWVADMDF AP  VI+A+HAR +HG++GY+         V++YL+    + I+P+WIVW  GLVP + +A R  G PGD+ +T TP+YPPFL+ P    +  + VPL
Sbjct:    5 FDAVIPRQGTSSLKWEKYAGRDVLPLWVADMDFAAPPAVIEALHARIDHGIFGYTRSPASANAAVVEYLQARYGWAIQPEWIVWLPGLVPGINLACRAVGEPGDAALTCTPVYPPFLFAPGLNQLELVAVPL 136          
The following BLAST results are available for this feature:
BLAST of NO21G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22608.14.900e-6985.92aminotransferase class i and ii [Nannochloropsis g... [more]
OIP98302.18.700e-3450.36aspartate aminotransferase [Syntrophobacteraceae b... [more]
WP_028455998.11.500e-3353.19putative C-S lyase [Chitinilyticum litopenaei][more]
KPJ78609.11.900e-3352.94aspartate aminotransferase [Deltaproteobacteria ba... [more]
WP_078790076.13.300e-3350.00putative C-S lyase [Geobacter thiogenes] >SJZ84007... [more]
OIP07768.14.300e-3350.37aspartate aminotransferase [Betaproteobacteria bac... [more]
WP_012528497.17.400e-3349.65putative C-S lyase [Geobacter bemidjiensis] >ACH37... [more]
AQT68929.17.400e-3350.37Cystathionine beta-lyase PatB [Phycisphaerae bacte... [more]
WP_012471008.11.600e-3251.52pyridoxal phosphate-dependent aminotransferase [Ge... [more]
WP_091196771.11.600e-3250.00putative C-S lyase [Formivibrio citricus] >SFN8512... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00940.1NO21G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00940.1NO21G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00940 ID=NO21G00940|Name=NO21G00940|organism=Nannochloropsis oceanica|type=gene|length=995bp
ATGTTAAGGCGCTCTGTATCATCCTGGCTGAGGCGCGGCAGCGCAACTCC
CAAGAGCACGCTCTTCATCGCTCCGTCCGGCGTTAGCCTTCACAGAAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGC
AGCGATAGCAAAAATAATAGCAACAGCCACAGCTACGATCCTCTATTCGA
TGACGTACCGGACCGAAGgtaaatgctctccatatagatctcttcgctgt
ttggttttttaggaaagagctcccatttgggtgctttttagcaaagtctg
tcgggtcaaataaatctctgagctcaacagcgagacctctgcttactacc
cttgatccattccctttccctccctcccttccccatcctccaaccatcaa
aacagAAATACTTCCAGTTTGAAGTGGTCCAAATATGGTGATGAGATATT
ACCGCTGTGGGTGGCTGACATGGACTTCCGGGCGCCACAATGTGTGATTG
ACGCGATGCACGCTCGGGCCGAGCACGGCGTCTACGGCTACTCTGTTCCG
AAAGAGGAGGTGACGATGGAGGTGATAAAGTACTTGAAACGGACGGCGCA
TTACCAGgtacgcagcagtttttatctcctccggtgttgttttcctcgtg
ttatcctacatattatgggtgcattacagtcttgccatactgtgtagata
ctggcacctatcctcacccttccttccgtgctttttcctttactttactc
tccaaccacagATTGAGCCCGACTGGATCGTCTGGAGCCATGGCCTGGTC
CCTGCGCTCACTGTCGCCGCACGCATGGCTGGTGGGCCTGGGGATAGCGT
GATGACCAACACTCCGATCTACCCTCCCTTCCTGTGGACCCCTAAAACCG
CCGACATGACCACACTGCAAGTGCCCCTCAAATTTGAAGGAGAGGGGGGG
GGGGGCAATGGAGGATGGACATCGCGAAAATGGAAGAGATGGTGA
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protein sequence of NO21G00940.1

>NO21G00940.1-protein ID=NO21G00940.1-protein|Name=NO21G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MLRRSVSSWLRRGSATPKSTLFIAPSGVSLHRSSSSSSSSSSSSSSGGGG
SDSKNNSNSHSYDPLFDDVPDRRNTSSLKWSKYGDEILPLWVADMDFRAP
QCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSH
GLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEG
EGGGGNGGWTSRKWKRW*
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Synonyms
Publications