NO21G00940.1, NO21G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00940.1
Unique NameNO21G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr21:307804..308798 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:307804..308798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00940.1 vs.
Match: EWM22608.1 (aminotransferase class i and ii [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.100e-68
Identity = 125/151 (82.78%), Postives = 141/151 (93.38%), Query Frame = 0 
Query:   54 KNNSNSHS-YDPLFDDVPDRRNTSSLKWSKYGDEILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSHGLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEGEGG 204
            +++S+S+S Y+PLFDD PDRR TSSLKW+KYG +ILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVP+EEVT  VIKYL+RTAHY++EP+WIVWSHGLVPALTVAARMAGG GDSVMTNTPIYPPFLWTPKTADM TLQVPL+F+ + G
Sbjct:   30 RHSSSSYSGYNPLFDDAPDRRATSSLKWTKYGPDILPLWVADMDFRAPQCVIDAMHARAEHGVYGYSVPREEVTQAVIKYLERTAHYKVEPEWIVWSHGLVPALTVAARMAGGAGDSVMTNTPIYPPFLWTPKTADMQTLQVPLRFDEDLG 180
The following BLAST results are available for this feature:
BLAST of NO21G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22608.11.100e-6882.78aminotransferase class i and ii [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00940NO21G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00940.1NO21G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00940.1.cds1NO21G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00940.1.cds2NO21G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00940.1.cds3NO21G00940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00940.1 ID=NO21G00940.1|Name=NO21G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
ATGTTAAGGCGCTCTGTATCATCCTGGCTGAGGCGCGGCAGCGCAACTCC
CAAGAGCACGCTCTTCATCGCTCCGTCCGGCGTTAGCCTTCACAGAAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGC
AGCGATAGCAAAAATAATAGCAACAGCCACAGCTACGATCCTCTATTCGA
TGACGTACCGGACCGAAGAAATACTTCCAGTTTGAAGTGGTCCAAATATG
GTGATGAGATATTACCGCTGTGGGTGGCTGACATGGACTTCCGGGCGCCA
CAATGTGTGATTGACGCGATGCACGCTCGGGCCGAGCACGGCGTCTACGG
CTACTCTGTTCCGAAAGAGGAGGTGACGATGGAGGTGATAAAGTACTTGA
AACGGACGGCGCATTACCAGATTGAGCCCGACTGGATCGTCTGGAGCCAT
GGCCTGGTCCCTGCGCTCACTGTCGCCGCACGCATGGCTGGTGGGCCTGG
GGATAGCGTGATGACCAACACTCCGATCTACCCTCCCTTCCTGTGGACCC
CTAAAACCGCCGACATGACCACACTGCAAGTGCCCCTCAAATTTGAAGGA
GAGGGGGGGGGGGGCAATGGAGGATGGACATCGCGAAAATGGAAGAGATG
GTGA
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protein sequence of NO21G00940.1

>NO21G00940.1-protein ID=NO21G00940.1-protein|Name=NO21G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MLRRSVSSWLRRGSATPKSTLFIAPSGVSLHRSSSSSSSSSSSSSSGGGG
SDSKNNSNSHSYDPLFDDVPDRRNTSSLKWSKYGDEILPLWVADMDFRAP
QCVIDAMHARAEHGVYGYSVPKEEVTMEVIKYLKRTAHYQIEPDWIVWSH
GLVPALTVAARMAGGPGDSVMTNTPIYPPFLWTPKTADMTTLQVPLKFEG
EGGGGNGGWTSRKWKRW*
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mRNA from alignment at chr21:307804..308798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00940.1 ID=NO21G00940.1|Name=NO21G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=995bp|location=Sequence derived from alignment at chr21:307804..308798- (Nannochloropsis oceanica)
ATGTTAAGGCGCTCTGTATCATCCTGGCTGAGGCGCGGCAGCGCAACTCC
CAAGAGCACGCTCTTCATCGCTCCGTCCGGCGTTAGCCTTCACAGAAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGC
AGCGATAGCAAAAATAATAGCAACAGCCACAGCTACGATCCTCTATTCGA
TGACGTACCGGACCGAAGGTAAATGCTCTCCATATAGATCTCTTCGCTGT
TTGGTTTTTTAGGAAAGAGCTCCCATTTGGGTGCTTTTTAGCAAAGTCTG
TCGGGTCAAATAAATCTCTGAGCTCAACAGCGAGACCTCTGCTTACTACC
CTTGATCCATTCCCTTTCCCTCCCTCCCTTCCCCATCCTCCAACCATCAA
AACAGAAATACTTCCAGTTTGAAGTGGTCCAAATATGGTGATGAGATATT
ACCGCTGTGGGTGGCTGACATGGACTTCCGGGCGCCACAATGTGTGATTG
ACGCGATGCACGCTCGGGCCGAGCACGGCGTCTACGGCTACTCTGTTCCG
AAAGAGGAGGTGACGATGGAGGTGATAAAGTACTTGAAACGGACGGCGCA
TTACCAGGTACGCAGCAGTTTTTATCTCCTCCGGTGTTGTTTTCCTCGTG
TTATCCTACATATTATGGGTGCATTACAGTCTTGCCATACTGTGTAGATA
CTGGCACCTATCCTCACCCTTCCTTCCGTGCTTTTTCCTTTACTTTACTC
TCCAACCACAGATTGAGCCCGACTGGATCGTCTGGAGCCATGGCCTGGTC
CCTGCGCTCACTGTCGCCGCACGCATGGCTGGTGGGCCTGGGGATAGCGT
GATGACCAACACTCCGATCTACCCTCCCTTCCTGTGGACCCCTAAAACCG
CCGACATGACCACACTGCAAGTGCCCCTCAAATTTGAAGGAGAGGGGGGG
GGGGGCAATGGAGGATGGACATCGCGAAAATGGAAGAGATGGTGA
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Coding sequence (CDS) from alignment at chr21:307804..308798-

>NO21G00940.1 ID=NO21G00940.1|Name=NO21G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr21:307804..308798- (Nannochloropsis oceanica)
ATGTTAAGGCGCTCTGTATCATCCTGGCTGAGGCGCGGCAGCGCAACTCC
CAAGAGCACGCTCTTCATCGCTCCGTCCGGCGTTAGCCTTCACAGAAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGC
AGCGATAGCAAAAATAATAGCAACAGCCACAGCTACGATCCTCTATTCGA
TGACGTACCGGACCGAAGAAATACTTCCAGTTTGAAGTGGTCCAAATATG
GTGATGAGATATTACCGCTGTGGGTGGCTGACATGGACTTCCGGGCGCCA
CAATGTGTGATTGACGCGATGCACGCTCGGGCCGAGCACGGCGTCTACGG
CTACTCTGTTCCGAAAGAGGAGGTGACGATGGAGGTGATAAAGTACTTGA
AACGGACGGCGCATTACCAGATTGAGCCCGACTGGATCGTCTGGAGCCAT
GGCCTGGTCCCTGCGCTCACTGTCGCCGCACGCATGGCTGGTGGGCCTGG
GGATAGCGTGATGACCAACACTCCGATCTACCCTCCCTTCCTGTGGACCC
CTAAAACCGCCGACATGACCACACTGCAAGTGCCCCTCAAATTTGAAGGA
GAGGGGGGGGGGGGCAATGGAGGATGGACATCGCGAAAATGGAAGAGATG
GTGA
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Synonyms
Publications