NO21G00850, NO21G00850 (gene) Nannochloropsis oceanica

Overview
NameNO21G00850
Unique NameNO21G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1738
Alignment locationchr21:284508..286245 -

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Properties
Property NameValue
Description40S ribosomal protein S28
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:284508..286245 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000289Ribosomal_S28e
Homology
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: CBJ30820.1 (40S ribosomal protein S28 [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 3.100e-22
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MD+Q +KL KV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: XP_009032667.1 (hypothetical protein AURANDRAFT_19173 [Aureococcus anophagefferens] >EGB13061.1 hypothetical protein AURANDRAFT_19173 [Aureococcus anophagefferens])

HSP 1 Score: 107.8 bits (268), Expect = 1.300e-20
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 0 
Query:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MD+  +KL K+  V  RTG+TGNVTQVRVEF+DDP RSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    1 MDTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: GAP83161.1 (putative 40S ribosomal protein S28 [Rosellinia necatrix] >GAW18055.1 hypothetical protein ANO14919_075250 [fungal sp. No.14919])

HSP 1 Score: 98.2 bits (243), Expect = 1.000e-17
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 0 
Query:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MD Q VKLVKV  V  RTGS G VTQVRVEFL+D TRSI RNVKGPVRE D+LCLLE ER+ARRLR
Sbjct:    1 MDKQPVKLVKVTRVLGRTGSRGGVTQVRVEFLEDQTRSIIRNVKGPVREDDILCLLESEREARRLR 66
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: GBG24606.1 (40S ribosomal protein S28 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 97.1 bits (240), Expect = 2.300e-17
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 0 
Query:    3 SQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            +Q V L +V  V +RTG+TGNVTQVRVEFLDD  RSI RNVKGPVREGDVL LLEWER+ARRLR
Sbjct:    9 TQAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: KUI56796.1 (40S ribosomal protein S28 [Valsa mali var. pyri] >KUI71137.1 40S ribosomal protein S28 [Valsa mali])

HSP 1 Score: 95.9 bits (237), Expect = 5.100e-17
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0 
Query:    1 MDS--QQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MDS  Q VKLVKV  V  RTGS G VTQVRVEF+DD TRSI RNVKGPVRE D+LCLLE ER+ARRLR
Sbjct:    1 MDSSKQPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVRENDILCLLESEREARRLR 68
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: GAY03952.1 (katanin p60 ATPase-containing subunit A [Pythium insidiosum])

HSP 1 Score: 95.9 bits (237), Expect = 5.100e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    3 SQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            S+   L KV +V  RTG+TGNVTQVRVEFL D  R I RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:  550 SRDYMLAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 613
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: GAY03819.1 (katanin p60 ATPase-containing subunit A [Pythium insidiosum])

HSP 1 Score: 95.9 bits (237), Expect = 5.100e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:    3 SQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            S+   L KV +V  RTG+TGNVTQVRVEFL D  R I RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:  312 SRDYMLAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 375
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: XP_007827699.1 (40S ribosomal protein S28 [Pestalotiopsis fici W106-1] >XP_008099256.1 ribosomal protein S28e [Colletotrichum graminicola M1.001] >XP_018163793.1 Ribosomal protein S28e [Colletotrichum higginsianum IMI 349063] >EFQ35236.1 ribosomal protein S28e [Colletotrichum graminicola M1.001] >CCF46007.1 40S ribosomal protein S28 [Colletotrichum higginsianum] >ETS87099.1 40S ribosomal protein S28 [Pestalotiopsis fici W106-1] >KDN65874.1 putative 40S ribosomal protein S28 [Colletotrichum sublineola] >KZL71826.1 40S ribosomal protein S28 [Colletotrichum tofieldiae] >OBR15276.1 Ribosomal protein S28e [Colletotrichum higginsianum IMI 349063] >OHW93033.1 40s ribosomal protein s28 [Colletotrichum incanum])

HSP 1 Score: 95.5 bits (236), Expect = 6.600e-17
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0 
Query:    1 MDS--QQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MDS  Q VKLVKV  V  RTGS G VTQVRVEF+DD TRSI RNVKGPVRE D+LCLLE ER+ARRLR
Sbjct:    1 MDSAKQPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILCLLESEREARRLR 68
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: ELA33106.1 (ribosomal protein s28e [Colletotrichum gloeosporioides Nara gc5])

HSP 1 Score: 95.5 bits (236), Expect = 6.600e-17
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0 
Query:    1 MDS--QQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MDS  Q VKLVKV  V  RTGS G VTQVRVEF+DD TRSI RNVKGPVRE D+LCLLE ER+ARRLR
Sbjct:    1 MDSTKQPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILCLLESEREARRLR 68
[Close]
BLAST of NO21G00850 vs. NCBI_GenBank
Match: ENH88571.1 (ribosomal protein s28e [Colletotrichum orbiculare MAFF 240422])

HSP 1 Score: 95.5 bits (236), Expect = 6.600e-17
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0 
Query:    1 MDS--QQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MDS  Q VKLVKV  V  RTGS G VTQVRVEF+DD TRSI RNVKGPVRE D+LCLLE ER+ARRLR
Sbjct:    1 MDSSKQPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIVRNVKGPVREDDILCLLESEREARRLR 68
The following BLAST results are available for this feature:
BLAST of NO21G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
2004006008001000120014001600SequenceCBJ30820.1XP_009032667.1GAP83161.1GBG24606.1KUI56796.1GAY03952.1GAY03819.1XP_007827699.1ELA33106.1ENH88571.1
Match NameE-valueIdentityDescription
CBJ30820.13.100e-2281.8240S ribosomal protein S28 [Ectocarpus siliculosus][more]
XP_009032667.11.300e-2075.76hypothetical protein AURANDRAFT_19173 [Aureococcus... [more]
GAP83161.11.000e-1777.27putative 40S ribosomal protein S28 [Rosellinia nec... [more]
GBG24606.12.300e-1776.5640S ribosomal protein S28 [Aurantiochytrium sp. FC... [more]
KUI56796.15.100e-1776.4740S ribosomal protein S28 [Valsa mali var. pyri] >... [more]
GAY03952.15.100e-1773.44katanin p60 ATPase-containing subunit A [Pythium i... [more]
GAY03819.15.100e-1773.44katanin p60 ATPase-containing subunit A [Pythium i... [more]
XP_007827699.16.600e-1776.4740S ribosomal protein S28 [Pestalotiopsis fici W10... [more]
ELA33106.16.600e-1776.47ribosomal protein s28e [Colletotrichum gloeosporio... [more]
ENH88571.16.600e-1776.47ribosomal protein s28e [Colletotrichum orbiculare ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004708NSK004708Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00850.1NO21G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602276gene_8039Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100155g5gene7857Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00850.1NO21G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00850 ID=NO21G00850|Name=NO21G00850|organism=Nannochloropsis oceanica|type=gene|length=1738bp
CCCGTGATGTTTTGTTTTTCCCTATTGTTGTTGTGAAGCTTCAGGAGTGT
GTGCGTGCGCCGAGCGAGGCGCGGTTGAAAGGAGGGAAAAGCAAACCACA
AAAGCCTTCCAAAAAAGGGACCAAAACAGTTGAATCTAAGGACACGAATA
CCTCAGACACGGTATTATTGTATATATCTCTATTCTTGGTGTGTTTGTGC
CTTCGCTTTTCGAACGCGTCGTCAGGAGGCAGGCCATGGATGGGCCATGG
ACCTTCTCGCTAGTGGACATTGTGCCGCGGCCTGGCTGCCATCCAGTCGA
CCCCCCCACCGTTCTCCCGCATTCTTCACGCCGCATGACTTGTTGATGAC
CAAACAACACACCGCCTGACCCAAAGCCGACACACACTCACATATTCATC
ACAATTTACTTGCTATATCACACCTACATTGGCCCTCTTCGCTCTCCTCC
ACCAGTCATCATGgtacgttatgcctcctcatgtccttgccccaccctcc
ttccctcccttcctccccctcgttcccttggtcccgttttgtaacacctc
ctcctttcacctcttcaacagGACTCTCAACAAGTCAAGCTCGTCAAGGT
CAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAGgtga
gtaggcgtgcatcgtgcgccgaggagaagcgagtgagggagggaggggat
gattctactgctggaagaaatccgtggagagcatgatgctgcctgcaaca
cagaggcctcctcgacttcatgaaatgatgtgtggcggtcgttggcccgc
gagtgggtgggcgagactagggcaggagctgcgtgcgcttagagggccta
atcatcctgcatcctgctgggttctacgcaaaccaccgaccaacccgaca
agtcttgcatccagttttcctctatcttgacactagtcatcctatcagta
ctaccgagcctgttgtctgtgcccttaatacagcaacacgatgcttgccg
tcatactaaaccctccatgcgtcatgctaaccctgtccctccctattttc
ctctctccctccttcccttcattctctcggaacctagGTGCGGGTGGAGT
TTTTGGACGACCCTACGCGTAGCATCCGGCGGAACGTGAAAGGCCCCGTG
CGGGAGgtacgtctgcgtttgagggaggaggaaaagctagactgagggaa
ggagggagaggcgggcgaggttattttgcgtatgggtgggattctgtgct
ggcttgtgtacggaccagtgcaactgcgtgtctgcaaggctgattttatt
gatacacgacttccttgagtgggaaaacactctcacccttccttcttcct
ccttcccttcctctctttttttcctgtgcagGGGGATGTACTGTGCCTGT
TGGAATGGGAGCGTGATGCCCGCCGACTTCGATAAGCTGCGGCCGACGTT
GCCGCCATCGCCGCAGCAGCAGCAGGAGTCACACCAAAAGCAGCACCAGT
AGCAGCAGCAGCAGCAAGTGGGAGAGGAGCAGCAGCTGCCGAATAGCAAC
ATTAAATGGGGAACTTTTGTGGAAGCAGGAGCAGCATTGTCTTTTCTTTC
CTCACTATATTGTCTTCTCTCATTGCAGCAATAGCAGCAGAAGGAACGGG
TTGAGAGGGGAAAAGGGGGGGCTTCGCGCTAGGTGAGAGAACGATAGAAG
CAAAAGGACCTGGGGAAAACTATCACTTGGCTTGACCT
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protein sequence of NO21G00850.1

>NO21G00850.1-protein ID=NO21G00850.1-protein|Name=NO21G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREG
DVLCLLEWERDARRLR*
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Synonyms
Publications