NO21G00850.1, NO21G00850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00850.1
Unique NameNO21G00850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length964
Alignment locationchr21:284508..286245 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:284508..286245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00850.1 vs.
Match: CBJ30820.1 (40S ribosomal protein S28 [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 3.100e-22
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0 
Query:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 67
            MD+Q +KL KV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    1 MDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
The following BLAST results are available for this feature:
BLAST of NO21G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900SequenceCBJ30820.1
Match NameE-valueIdentityDescription
CBJ30820.13.100e-2281.8240S ribosomal protein S28 [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00850NO21G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00850.1NO21G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00850.1.cds1NO21G00850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00850.1.cds2NO21G00850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00850.1.cds3NO21G00850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00850.1.cds4NO21G00850.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00850.1 ID=NO21G00850.1|Name=NO21G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=964bp
CCCGTGATGTTTTGTTTTTCCCTATTGTTGTTGTGAAGCTTCAGGAGTGT
GTGCGTGCGCCGAGCGAGGCGCGGTTGAAAGGAGGGAAAAGCAAACCACA
AAAGCCTTCCAAAAAAGGGACCAAAACAGTTGAATCTAAGGACACGAATA
CCTCAGACACGGTATTATTGTATATATCTCTATTCTTGGTGTGTTTGTGC
CTTCGCTTTTCGAACGCGTCGTCAGGAGGCAGGCCATGGATGGGCCATGG
ACCTTCTCGCTAGTGGACATTGTGCCGCGGCCTGGCTGCCATCCAGTCGA
CCCCCCCACCGTTCTCCCGCATTCTTCACGCCGCATGACTTGTTGATGAC
CAAACAACACACCGCCTGACCCAAAGCCGACACACACTCACATATTCATC
ACAATTTACTTGCTATATCACACCTACATTGGCCCTCTTCGCTCTCCTCC
ACCAGTCATCATGGACTCTCAACAAGTCAAGCTCGTCAAGGTCAAGTCGG
TAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAGGTGCGGGTGGAG
TTTTTGGACGACCCTACGCGTAGCATCCGGCGGAACGTGAAAGGCCCCGT
GCGGGAGGGGGATGTACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCC
GACTTCGATAAGCTGCGGCCGACGTTGCCGCCATCGCCGCAGCAGCAGCA
GGAGTCACACCAAAAGCAGCACCAGTAGCAGCAGCAGCAGCAAGTGGGAG
AGGAGCAGCAGCTGCCGAATAGCAACATTAAATGGGGAACTTTTGTGGAA
GCAGGAGCAGCATTGTCTTTTCTTTCCTCACTATATTGTCTTCTCTCATT
GCAGCAATAGCAGCAGAAGGAACGGGTTGAGAGGGGAAAAGGGGGGGCTT
CGCGCTAGGTGAGAGAACGATAGAAGCAAAAGGACCTGGGGAAAACTATC
ACTTGGCTTGACCT
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protein sequence of NO21G00850.1

>NO21G00850.1-protein ID=NO21G00850.1-protein|Name=NO21G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MDSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREG
DVLCLLEWERDARRLR*
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mRNA from alignment at chr21:284508..286245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00850.1 ID=NO21G00850.1|Name=NO21G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at chr21:284508..286245- (Nannochloropsis oceanica)
CCCGTGATGTTTTGTTTTTCCCTATTGTTGTTGTGAAGCTTCAGGAGTGT
GTGCGTGCGCCGAGCGAGGCGCGGTTGAAAGGAGGGAAAAGCAAACCACA
AAAGCCTTCCAAAAAAGGGACCAAAACAGTTGAATCTAAGGACACGAATA
CCTCAGACACGGTATTATTGTATATATCTCTATTCTTGGTGTGTTTGTGC
CTTCGCTTTTCGAACGCGTCGTCAGGAGGCAGGCCATGGATGGGCCATGG
ACCTTCTCGCTAGTGGACATTGTGCCGCGGCCTGGCTGCCATCCAGTCGA
CCCCCCCACCGTTCTCCCGCATTCTTCACGCCGCATGACTTGTTGATGAC
CAAACAACACACCGCCTGACCCAAAGCCGACACACACTCACATATTCATC
ACAATTTACTTGCTATATCACACCTACATTGGCCCTCTTCGCTCTCCTCC
ACCAGTCATCATGGTACGTTATGCCTCCTCATGTCCTTGCCCCACCCTCC
TTCCCTCCCTTCCTCCCCCTCGTTCCCTTGGTCCCGTTTTGTAACACCTC
CTCCTTTCACCTCTTCAACAGGACTCTCAACAAGTCAAGCTCGTCAAGGT
CAAGTCGGTAGAGGCCCGCACGGGCAGCACGGGGAATGTGACCCAGGTGA
GTAGGCGTGCATCGTGCGCCGAGGAGAAGCGAGTGAGGGAGGGAGGGGAT
GATTCTACTGCTGGAAGAAATCCGTGGAGAGCATGATGCTGCCTGCAACA
CAGAGGCCTCCTCGACTTCATGAAATGATGTGTGGCGGTCGTTGGCCCGC
GAGTGGGTGGGCGAGACTAGGGCAGGAGCTGCGTGCGCTTAGAGGGCCTA
ATCATCCTGCATCCTGCTGGGTTCTACGCAAACCACCGACCAACCCGACA
AGTCTTGCATCCAGTTTTCCTCTATCTTGACACTAGTCATCCTATCAGTA
CTACCGAGCCTGTTGTCTGTGCCCTTAATACAGCAACACGATGCTTGCCG
TCATACTAAACCCTCCATGCGTCATGCTAACCCTGTCCCTCCCTATTTTC
CTCTCTCCCTCCTTCCCTTCATTCTCTCGGAACCTAGGTGCGGGTGGAGT
TTTTGGACGACCCTACGCGTAGCATCCGGCGGAACGTGAAAGGCCCCGTG
CGGGAGGTACGTCTGCGTTTGAGGGAGGAGGAAAAGCTAGACTGAGGGAA
GGAGGGAGAGGCGGGCGAGGTTATTTTGCGTATGGGTGGGATTCTGTGCT
GGCTTGTGTACGGACCAGTGCAACTGCGTGTCTGCAAGGCTGATTTTATT
GATACACGACTTCCTTGAGTGGGAAAACACTCTCACCCTTCCTTCTTCCT
CCTTCCCTTCCTCTCTTTTTTTCCTGTGCAGGGGGATGTACTGTGCCTGT
TGGAATGGGAGCGTGATGCCCGCCGACTTCGATAAGCTGCGGCCGACGTT
GCCGCCATCGCCGCAGCAGCAGCAGGAGTCACACCAAAAGCAGCACCAGT
AGCAGCAGCAGCAGCAAGTGGGAGAGGAGCAGCAGCTGCCGAATAGCAAC
ATTAAATGGGGAACTTTTGTGGAAGCAGGAGCAGCATTGTCTTTTCTTTC
CTCACTATATTGTCTTCTCTCATTGCAGCAATAGCAGCAGAAGGAACGGG
TTGAGAGGGGAAAAGGGGGGGCTTCGCGCTAGGTGAGAGAACGATAGAAG
CAAAAGGACCTGGGGAAAACTATCACTTGGCTTGACCT
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Coding sequence (CDS) from alignment at chr21:284508..286245-

>NO21G00850.1 ID=NO21G00850.1|Name=NO21G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=201bp|location=Sequence derived from alignment at chr21:284508..286245- (Nannochloropsis oceanica)
ATGGACTCTCAACAAGTCAAGCTCGTCAAGGTCAAGTCGGTAGAGGCCCG
CACGGGCAGCACGGGGAATGTGACCCAGGTGCGGGTGGAGTTTTTGGACG
ACCCTACGCGTAGCATCCGGCGGAACGTGAAAGGCCCCGTGCGGGAGGGG
GATGTACTGTGCCTGTTGGAATGGGAGCGTGATGCCCGCCGACTTCGATA
A
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Synonyms
Publications