NO21G00740, NO21G00740 (gene) Nannochloropsis oceanica

Overview
NameNO21G00740
Unique NameNO21G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr21:252599..254323 +

Link to JBrowse

Properties
Property NameValue
DescriptionDdrgk domain-containing protein 1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:252599..254323 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR019153DDRGK_dom-contain
Homology
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_005841305.1 (hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712] >EKX54325.1 hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712])

HSP 1 Score: 97.8 bits (242), Expect = 6.600e-17
Identity = 47/91 (51.65%), Postives = 67/91 (73.63%), Query Frame = 0 
Query:  221 LLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLR 312
            +L  F+ Y+K +K+  LDE+++ FKL  + VV R+E LE MGR+ G++DDRGK+I I  EEME V +W+  +GR+GV DLA ESNRL+ L+
Sbjct:    1 MLQEFIDYLKAKKISPLDEVASEFKLKTQEVVNRVEGLEAMGRITGLLDDRGKFIYISTEEMEAVAKWIKLQGRIGVSDLAAESNRLVDLQ 91
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BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_003401218.1 (DDRGK domain-containing protein 1 [Bombus terrestris])

HSP 1 Score: 95.5 bits (236), Expect = 3.300e-16
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGRE 316
            +LL  FVLYIK+ KVV+L++L+ARF L    VVER++ L+    L GV+DDRGK+I I  EE+E V ++V  RGRV + +LA  SNRLI L  G++
Sbjct:  189 NLLEEFVLYIKQNKVVILEDLAARFGLKTSSVVERIQDLQAHENLTGVIDDRGKFIYISQEELEAVAKFVRQRGRVSITELAENSNRLINLNPGKQ 284
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BLAST of NO21G00740 vs. NCBI_GenBank
Match: KOX80208.1 (DDRGK domain-containing protein 1 [Melipona quadrifasciata])

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-15
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGRE 316
            +LL  F+ YIK+ KVV+L++L+A F L    VVER++ L+  G L GV+DDRGK+I I  EE+E V ++V  RGRV + +LA  SNRLI L  G++
Sbjct:  208 NLLQEFIQYIKQNKVVVLEDLAAHFGLKASSVVERIQELQANGSLTGVIDDRGKFIYISQEELEAVAKFVRQRGRVSITELAENSNRLINLNPGKQ 303
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BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_016909702.1 (PREDICTED: DDRGK domain-containing protein 1 [Apis cerana] >PBC31393.1 DDRGK domain-containing protein [Apis cerana cerana])

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-15
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGREGVKE 320
            +LL  F+ YIK+ KVV+L++L+A F L    V+ER++ L+  G L GV+DDRGK+I I  EE+E V ++V  RGR+ + +LA  SNRLI L  G++ + E
Sbjct:  189 NLLEQFLQYIKQNKVVVLEDLAAYFNLKTASVIERIQELQATGNLTGVIDDRGKFIYISQEELEAVAKFVRQRGRISITELAENSNRLINLNPGKQSMVE 288
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_006620351.1 (PREDICTED: DDRGK domain-containing protein 1-like [Apis dorsata])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGREGVKE 320
            +LL  F+ YIK+ KVV+L++L+A F L    V+ER++ L+  G L GV+DDRGK+I I  EE+E V ++V  RGR+ + +LA  SNRLI L  G++ + E
Sbjct:  189 NLLEQFLQYIKQNKVVVLEDLAAYFSLKTASVIERIQELQATGSLTGVIDDRGKFIYISQEELEAVAKFVRQRGRISITELAENSNRLINLNPGKQSMVE 288
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_003696041.2 (PREDICTED: DNA ligase 1-like [Apis florea])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGREGVKE 320
            +LL  F+ YIK+ KVV+L++L+A F L    V+ER++ L+  G L GV+DDRGK+I I  EE+E V ++V  RGR+ + +LA  SNRLI L  G++ + E
Sbjct:  584 NLLEQFLQYIKQNKVVVLEDLAAYFNLKTASVIERIQELQATGSLTGVIDDRGKFIYISQEELEAVAKFVRQRGRISITELAENSNRLINLNPGKQSMVE 683
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_624506.1 (PREDICTED: DDRGK domain-containing protein 1 [Apis mellifera])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 47/100 (47.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGREGVKE 320
            +LL  F+ YIK+ KVV+L++L+A F L    V+ER++ L+  G L GV+DDRGK+I I  EE+E V ++V  RGR+ + +LA  SNRLI L  G++ + E
Sbjct:  189 NLLEQFLQYIKQNKVVVLEDLAAYFSLKTASVIERIQELQATGSLTGVIDDRGKFIYISQEELEAVAKFVRQRGRISITELAENSNRLINLNPGKQSMVE 288
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_003484798.1 (DDRGK domain-containing protein 1 [Bombus impatiens])

HSP 1 Score: 92.8 bits (229), Expect = 2.100e-15
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGRE 316
            +LL  FVLYIK+ KVV+L++L+A F L    VVER++ L+    L GV+DDRGK+I I  EE+E V ++V  RGRV + +LA  SNRLI L  G++
Sbjct:  189 NLLEEFVLYIKQNKVVILEDLAAYFGLKTSSVVERIQDLQAHENLTGVIDDRGKFIYISQEELESVAKFVRQRGRVSITELAENSNRLINLNPGKQ 284
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: XP_013071511.1 (PREDICTED: DDRGK domain-containing protein 1-like [Biomphalaria glabrata])

HSP 1 Score: 92.0 bits (227), Expect = 3.600e-15
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:  221 LLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKL 311
            LL  F+ YIKE KVV+L++L+  FKL V+ V++R++ L+  GRL GV+DDRGK+I I  EE+E V R++   GRV + DLA  SNRLI L
Sbjct:  193 LLGQFINYIKETKVVMLEDLAGYFKLNVQDVIQRVQDLQTEGRLTGVIDDRGKFIYITMEELEAVARYIRQNGRVSITDLAASSNRLINL 282
[Close]
BLAST of NO21G00740 vs. NCBI_GenBank
Match: KOO29530.1 (ddrgk domain-containing protein 1-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 92.0 bits (227), Expect = 3.600e-15
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 0 
Query:  220 DLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGREGV 318
            ++L  F+ Y+KE KV +L+E++A FKL V+ V++R++ LE MG + GV+DDRGK+I I   EME V ++V  +GRV +  LA ESN+LI L+  R+ +
Sbjct:   69 EMLERFITYMKEHKVTVLEEIAAEFKLRVQDVIQRVQALERMGHVTGVIDDRGKFIYITTAEMEAVAKYVQRKGRVRISTLAMESNKLIDLQPKRKEI 166
The following BLAST results are available for this feature:
BLAST of NO21G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005841305.16.600e-1751.65hypothetical protein GUITHDRAFT_149979 [Guillardia... [more]
XP_003401218.13.300e-1652.08DDRGK domain-containing protein 1 [Bombus terrestr... [more]
KOX80208.11.200e-1550.00DDRGK domain-containing protein 1 [Melipona quadri... [more]
XP_016909702.11.200e-1547.00PREDICTED: DDRGK domain-containing protein 1 [Apis... [more]
XP_006620351.11.600e-1547.00PREDICTED: DDRGK domain-containing protein 1-like ... [more]
XP_003696041.21.600e-1547.00PREDICTED: DNA ligase 1-like [Apis florea][more]
XP_624506.11.600e-1547.00PREDICTED: DDRGK domain-containing protein 1 [Apis... [more]
XP_003484798.12.100e-1551.04DDRGK domain-containing protein 1 [Bombus impatien... [more]
XP_013071511.13.600e-1553.33PREDICTED: DDRGK domain-containing protein 1-like ... [more]
KOO29530.13.600e-1546.94ddrgk domain-containing protein 1-like protein [Ch... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004718NSK004718Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00740.1NO21G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658861gene_9460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00740.1NO21G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00740 ID=NO21G00740|Name=NO21G00740|organism=Nannochloropsis oceanica|type=gene|length=1725bp
ATGCCGCTGCGGGATGGGGACATCTTCATCCTGGTCGTGTGCTTGGCAGG
CTTGGCTTTGATAGTGGGCGGGTTATTGATATGGTTGGGTCCAGGTGAAG
CGATGCCTGAGGAAAAGGAAGGGGAAGAGGAGGAACAAGAGCAGCTGCAA
ATGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AAGAGGAGGAAGAGGAAGAGGGTTGCGGCGACGACGCGGAGAAGGAGTTG
GAGGCGATGCAGCAAGAGCGAGGCATAGAGCTTTGTGGGAAGACGGGGAA
GGAGAGGAGGACGACGAACAAGAGGGGGAGGGGGACGAGGGGAAATGTAG
AGGGGAAGGAGCGGAAGAGCGGCGGCAACGGAAAAAGGATAAAATTAAAG
CGGACAAGAGGGCATTGAAGGAAGAGACGCGACGAGCGCGAGAAGAGAGA
GAACGAAGACATTTACTCGGGCTGCCCTCTCCTGCACCCAAGGAGGATGA
AGAGGACTGGGAGGAGGAGGACGAGGCGGAGGAGGACGAGGAGGCCAAGA
CCAAACGAAGAAAACGGGAGGAAAAAGAGTCCGAATTTCAAAAGTGGAAA
GCGATGATGCAGGTGGAAGGAGAAGGGAGTACGGCAGAGGAGGAGATGGA
GGAAGAGGATTTGCTCTCATCCTTTGTTTTGTATATAAAGGAGAGAAAGG
TTGTGTTGCTTGACGAGTTGAGTGCACGGTTTAAGTTGCCTGTAAAAGTG
GTCGTAGAACGGTTGGAAGTGCTTGAAGGGATGGGGAGGCTGAGGGGGGT
GGTGGATGACCGGGGGAAGTACATAGAAATAGAGGATGAGGAAATGGAGG
GAGTCAGACGGTGGGTAGTGGGGAGGGGGAGAGTTGGGGTGGGTGACTTG
GCGCGGGAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGT
GAAGGAGGGAGGGGGAAAGTGGCGTAGAGGACGGGGAGCGTAAATTTTAT
TTATGGCTGCGGAGTAGGAAAGTATGAGAGTTATAGGGCAATAGTGACGA
GAACAACAACAAAAAGAACAATATCAAGAAGAAAAAGAATAACAACATTA
ACCCCTTCGCAAAAGCAGAATTCCTCTGCCAGTCTTGATCACCCGCACTC
AAGCTGCGAGGTATCTTTGAGTACAAGCATCAGTGTTATTGTCTCCACCC
TCTTCTTCCTTCCTTATGCTCCTCCCTCTCCGATCCATTCCATGTTCCCT
TCTCATTTTGGCCGCTTTCTCTGTCTATTTTCTTCCTTTTCTCTTCTTAA
ACATATACATATACGCTCTACGGTATTTTCTCAATGTGTTCCCGCTCCTG
TCCGTATCTCTCTTCTATCCACCTCCTGTATCATTATTTTCACTCCATCA
TTCTTACGACCTCATCTACACCTATCACACCCAGCCCTCATGAACAAAAC
ACCTGCAGCCACTCTTTCTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTT
CTCCTCCTTCTCCTCCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCCA
GCCCGACCTCCCTCCCTTCCTCCCTCCTCCTTTCCTTCGCTTTCCTCCCA
ACCAAGTCGCACTGCGTTATCGACATCCTTCCTCGACCTCCCGATCTCCC
GCCCTCTCTCCATCCCTCCCTTCCTTCCCCCCTCATGCAATCACACATGC
CGCCGACGCCACCGCCGCCGCCGAC
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protein sequence of NO21G00740.1

>NO21G00740.1-protein ID=NO21G00740.1-protein|Name=NO21G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MPLRDGDIFILVVCLAGLALIVGGLLIWLGPGEAMPEEKEGEEEEQEQLQ
MRGGGGGGGGGGGGGGRRGGRGRGLRRRRGEGVGGDAARARHRALWEDGE
GEEDDEQEGEGDEGKCRGEGAEERRQRKKDKIKADKRALKEETRRAREER
ERRHLLGLPSPAPKEDEEDWEEEDEAEEDEEAKTKRRKREEKESEFQKWK
AMMQVEGEGSTAEEEMEEEDLLSSFVLYIKERKVVLLDELSARFKLPVKV
VVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDL
ARESNRLIKLRGGREGVKEGGGKWRRGRGA*
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Synonyms
Publications