NO21G00740.1, NO21G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00740.1
Unique NameNO21G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr21:252599..254323 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:252599..254323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00740.1 vs.
Match: XP_003401218.1 (DDRGK domain-containing protein 1 [Bombus terrestris])

HSP 1 Score: 105.1 bits (261), Expect = 4.100e-19
Identity = 101/256 (39.45%), Postives = 147/256 (57.42%), Query Frame = 0 
Query:   68 RGGRGRGLRRRRGEGVGGDAARARHRALWEDGEGEEDD----EQEGEGDEGKCRGEGAEERRQRKKDKIKADKRALKEETRRAREERERRHLLGLPSPAPKEDEEDWEEEDEAEEDEEAKTKRRKREEKES----EFQKWKAMMQVEGEGSTAEEEMEEEDLLSSFVLYIKERKVVLLDELSARFKLPVKVVVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDLARESNRLIKLRGGRE 316
            R  +GR +RR  G+ V    AR R +A       E+DD    E   E DE     +     ++R K   K++KRA +E   R REER++R  L       +E+ +   E++ AEE  + + +R+ R+EKE     E+ K K    VE EG   +++ +EE+LL  FVLYIK+ KVV+L++L+ARF L    VVER++ L+    L GV+DDRGK+I I  EE+E V ++V  RGRV + +LA  SNRLI L  G++
Sbjct:   39 RVAQGRPIRRAAGQRV----ARRRMQATVSQQIEEDDDGSGNEANDEADEKPATPDFKMGAKKRAKLAAKSEKRAQREVVEREREERKKREQL------LQEERDRQSEKERAEELRQEEAERKARQEKEKKEYEEYLKMKQAFSVEEEGYDQDDKEDEENLLEEFVLYIKQNKVVILEDLAARFGLKTSSVVERIQDLQAHENLTGVIDDRGKFIYISQEELEAVAKFVRQRGRVSITELAENSNRLINLNPGKQ 284
The following BLAST results are available for this feature:
BLAST of NO21G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003401218.14.100e-1939.45DDRGK domain-containing protein 1 [Bombus terrestr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00740NO21G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00740.1NO21G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00740.1.cds1NO21G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00740.1 ID=NO21G00740.1|Name=NO21G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp
ATGCCGCTGCGGGATGGGGACATCTTCATCCTGGTCGTGTGCTTGGCAGG
CTTGGCTTTGATAGTGGGCGGGTTATTGATATGGTTGGGTCCAGGTGAAG
CGATGCCTGAGGAAAAGGAAGGGGAAGAGGAGGAACAAGAGCAGCTGCAA
ATGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AAGAGGAGGAAGAGGAAGAGGGTTGCGGCGACGACGCGGAGAAGGAGTTG
GAGGCGATGCAGCAAGAGCGAGGCATAGAGCTTTGTGGGAAGACGGGGAA
GGAGAGGAGGACGACGAACAAGAGGGGGAGGGGGACGAGGGGAAATGTAG
AGGGGAAGGAGCGGAAGAGCGGCGGCAACGGAAAAAGGATAAAATTAAAG
CGGACAAGAGGGCATTGAAGGAAGAGACGCGACGAGCGCGAGAAGAGAGA
GAACGAAGACATTTACTCGGGCTGCCCTCTCCTGCACCCAAGGAGGATGA
AGAGGACTGGGAGGAGGAGGACGAGGCGGAGGAGGACGAGGAGGCCAAGA
CCAAACGAAGAAAACGGGAGGAAAAAGAGTCCGAATTTCAAAAGTGGAAA
GCGATGATGCAGGTGGAAGGAGAAGGGAGTACGGCAGAGGAGGAGATGGA
GGAAGAGGATTTGCTCTCATCCTTTGTTTTGTATATAAAGGAGAGAAAGG
TTGTGTTGCTTGACGAGTTGAGTGCACGGTTTAAGTTGCCTGTAAAAGTG
GTCGTAGAACGGTTGGAAGTGCTTGAAGGGATGGGGAGGCTGAGGGGGGT
GGTGGATGACCGGGGGAAGTACATAGAAATAGAGGATGAGGAAATGGAGG
GAGTCAGACGGTGGGTAGTGGGGAGGGGGAGAGTTGGGGTGGGTGACTTG
GCGCGGGAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGT
GAAGGAGGGAGGGGGAAAGTGGCGTAGAGGACGGGGAGCGTAAATTTTAT
TTATGGCTGCGGAGTAGGAAAGTATGAGAGTTATAGGGCAATAGTGACGA
GAACAACAACAAAAAGAACAATATCAAGAAGAAAAAGAATAACAACATTA
ACCCCTTCGCAAAAGCAGAATTCCTCTGCCAGTCTTGATCACCCGCACTC
AAGCTGCGAGGTATCTTTGAGTACAAGCATCAGTGTTATTGTCTCCACCC
TCTTCTTCCTTCCTTATGCTCCTCCCTCTCCGATCCATTCCATGTTCCCT
TCTCATTTTGGCCGCTTTCTCTGTCTATTTTCTTCCTTTTCTCTTCTTAA
ACATATACATATACGCTCTACGGTATTTTCTCAATGTGTTCCCGCTCCTG
TCCGTATCTCTCTTCTATCCACCTCCTGTATCATTATTTTCACTCCATCA
TTCTTACGACCTCATCTACACCTATCACACCCAGCCCTCATGAACAAAAC
ACCTGCAGCCACTCTTTCTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTT
CTCCTCCTTCTCCTCCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCCA
GCCCGACCTCCCTCCCTTCCTCCCTCCTCCTTTCCTTCGCTTTCCTCCCA
ACCAAGTCGCACTGCGTTATCGACATCCTTCCTCGACCTCCCGATCTCCC
GCCCTCTCTCCATCCCTCCCTTCCTTCCCCCCTCATGCAATCACACATGC
CGCCGACGCCACCGCCGCCGCCGAC
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protein sequence of NO21G00740.1

>NO21G00740.1-protein ID=NO21G00740.1-protein|Name=NO21G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MPLRDGDIFILVVCLAGLALIVGGLLIWLGPGEAMPEEKEGEEEEQEQLQ
MRGGGGGGGGGGGGGGRRGGRGRGLRRRRGEGVGGDAARARHRALWEDGE
GEEDDEQEGEGDEGKCRGEGAEERRQRKKDKIKADKRALKEETRRAREER
ERRHLLGLPSPAPKEDEEDWEEEDEAEEDEEAKTKRRKREEKESEFQKWK
AMMQVEGEGSTAEEEMEEEDLLSSFVLYIKERKVVLLDELSARFKLPVKV
VVERLEVLEGMGRLRGVVDDRGKYIEIEDEEMEGVRRWVVGRGRVGVGDL
ARESNRLIKLRGGREGVKEGGGKWRRGRGA*
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mRNA from alignment at chr21:252599..254323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00740.1 ID=NO21G00740.1|Name=NO21G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr21:252599..254323+ (Nannochloropsis oceanica)
ATGCCGCTGCGGGATGGGGACATCTTCATCCTGGTCGTGTGCTTGGCAGG
CTTGGCTTTGATAGTGGGCGGGTTATTGATATGGTTGGGTCCAGGTGAAG
CGATGCCTGAGGAAAAGGAAGGGGAAGAGGAGGAACAAGAGCAGCTGCAA
ATGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AAGAGGAGGAAGAGGAAGAGGGTTGCGGCGACGACGCGGAGAAGGAGTTG
GAGGCGATGCAGCAAGAGCGAGGCATAGAGCTTTGTGGGAAGACGGGGAA
GGAGAGGAGGACGACGAACAAGAGGGGGAGGGGGACGAGGGGAAATGTAG
AGGGGAAGGAGCGGAAGAGCGGCGGCAACGGAAAAAGGATAAAATTAAAG
CGGACAAGAGGGCATTGAAGGAAGAGACGCGACGAGCGCGAGAAGAGAGA
GAACGAAGACATTTACTCGGGCTGCCCTCTCCTGCACCCAAGGAGGATGA
AGAGGACTGGGAGGAGGAGGACGAGGCGGAGGAGGACGAGGAGGCCAAGA
CCAAACGAAGAAAACGGGAGGAAAAAGAGTCCGAATTTCAAAAGTGGAAA
GCGATGATGCAGGTGGAAGGAGAAGGGAGTACGGCAGAGGAGGAGATGGA
GGAAGAGGATTTGCTCTCATCCTTTGTTTTGTATATAAAGGAGAGAAAGG
TTGTGTTGCTTGACGAGTTGAGTGCACGGTTTAAGTTGCCTGTAAAAGTG
GTCGTAGAACGGTTGGAAGTGCTTGAAGGGATGGGGAGGCTGAGGGGGGT
GGTGGATGACCGGGGGAAGTACATAGAAATAGAGGATGAGGAAATGGAGG
GAGTCAGACGGTGGGTAGTGGGGAGGGGGAGAGTTGGGGTGGGTGACTTG
GCGCGGGAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGT
GAAGGAGGGAGGGGGAAAGTGGCGTAGAGGACGGGGAGCGTAAATTTTAT
TTATGGCTGCGGAGTAGGAAAGTATGAGAGTTATAGGGCAATAGTGACGA
GAACAACAACAAAAAGAACAATATCAAGAAGAAAAAGAATAACAACATTA
ACCCCTTCGCAAAAGCAGAATTCCTCTGCCAGTCTTGATCACCCGCACTC
AAGCTGCGAGGTATCTTTGAGTACAAGCATCAGTGTTATTGTCTCCACCC
TCTTCTTCCTTCCTTATGCTCCTCCCTCTCCGATCCATTCCATGTTCCCT
TCTCATTTTGGCCGCTTTCTCTGTCTATTTTCTTCCTTTTCTCTTCTTAA
ACATATACATATACGCTCTACGGTATTTTCTCAATGTGTTCCCGCTCCTG
TCCGTATCTCTCTTCTATCCACCTCCTGTATCATTATTTTCACTCCATCA
TTCTTACGACCTCATCTACACCTATCACACCCAGCCCTCATGAACAAAAC
ACCTGCAGCCACTCTTTCTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTT
CTCCTCCTTCTCCTCCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCCA
GCCCGACCTCCCTCCCTTCCTCCCTCCTCCTTTCCTTCGCTTTCCTCCCA
ACCAAGTCGCACTGCGTTATCGACATCCTTCCTCGACCTCCCGATCTCCC
GCCCTCTCTCCATCCCTCCCTTCCTTCCCCCCTCATGCAATCACACATGC
CGCCGACGCCACCGCCGCCGCCGAC
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Coding sequence (CDS) from alignment at chr21:252599..254323+

>NO21G00740.1 ID=NO21G00740.1|Name=NO21G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr21:252599..254323+ (Nannochloropsis oceanica)
ATGCCGCTGCGGGATGGGGACATCTTCATCCTGGTCGTGTGCTTGGCAGG
CTTGGCTTTGATAGTGGGCGGGTTATTGATATGGTTGGGTCCAGGTGAAG
CGATGCCTGAGGAAAAGGAAGGGGAAGAGGAGGAACAAGAGCAGCTGCAA
ATGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AAGAGGAGGAAGAGGAAGAGGGTTGCGGCGACGACGCGGAGAAGGAGTTG
GAGGCGATGCAGCAAGAGCGAGGCATAGAGCTTTGTGGGAAGACGGGGAA
GGAGAGGAGGACGACGAACAAGAGGGGGAGGGGGACGAGGGGAAATGTAG
AGGGGAAGGAGCGGAAGAGCGGCGGCAACGGAAAAAGGATAAAATTAAAG
CGGACAAGAGGGCATTGAAGGAAGAGACGCGACGAGCGCGAGAAGAGAGA
GAACGAAGACATTTACTCGGGCTGCCCTCTCCTGCACCCAAGGAGGATGA
AGAGGACTGGGAGGAGGAGGACGAGGCGGAGGAGGACGAGGAGGCCAAGA
CCAAACGAAGAAAACGGGAGGAAAAAGAGTCCGAATTTCAAAAGTGGAAA
GCGATGATGCAGGTGGAAGGAGAAGGGAGTACGGCAGAGGAGGAGATGGA
GGAAGAGGATTTGCTCTCATCCTTTGTTTTGTATATAAAGGAGAGAAAGG
TTGTGTTGCTTGACGAGTTGAGTGCACGGTTTAAGTTGCCTGTAAAAGTG
GTCGTAGAACGGTTGGAAGTGCTTGAAGGGATGGGGAGGCTGAGGGGGGT
GGTGGATGACCGGGGGAAGTACATAGAAATAGAGGATGAGGAAATGGAGG
GAGTCAGACGGTGGGTAGTGGGGAGGGGGAGAGTTGGGGTGGGTGACTTG
GCGCGGGAGAGCAATCGGTTGATTAAGCTGAGAGGAGGAAGGGAGGGGGT
GAAGGAGGGAGGGGGAAAGTGGCGTAGAGGACGGGGAGCGTAA
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Synonyms
Publications