NO21G00650, NO21G00650 (gene) Nannochloropsis oceanica

Overview
NameNO21G00650
Unique NameNO21G00650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1523
Alignment locationchr21:222476..223998 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:222476..223998 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO21G00650 vs. NCBI_GenBank
Match: EWM22564.1 (hypothetical protein Naga_100529g4 [Nannochloropsis gaditana])

HSP 1 Score: 142.5 bits (358), Expect = 1.000e-30
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0 
Query:    9 LLLLSLFSLTCCEAFHGVHPLPNQARLASPRAKTQAQPLFRSPPQRAALVRREVIAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVE 100
            LLLL L +L   EAFHGVHPLPNQAR ASPRAK Q+QPL RSP +R AL+RREV+AIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVE
Sbjct:   41 LLLLFLSTLGWSEAFHGVHPLPNQARYASPRAKVQSQPLARSPSERTALIRREVVAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVE 131
The following BLAST results are available for this feature:
BLAST of NO21G00650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22564.11.000e-3083.52hypothetical protein Naga_100529g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004730NSK004730Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00650.1NO21G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606088gene_9469Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100529g4gene7877Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00650.1NO21G00650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00650 ID=NO21G00650|Name=NO21G00650|organism=Nannochloropsis oceanica|type=gene|length=1523bp
CGTTGTCGTCATGCACGTCCCTGTGTGGTGGGTACGTTAGTCTTGGACAT
GCAAGCAAGGAATGTTGGGTCGTGCGTCTTCGGCGAACAAACTTTGAAAG
GGGGGGGCGCTCTTCCTCCTTGCCTCCTTGCCCTTGCCTTGTCTTGAGCC
TGTCCAGAGCGTGTTTTATTGGCACCATTTGTGCCCTGCATTTGCATACA
GTGTCCATTTGACCAGTACCAGGCCAGGCCACAAGCGGAAAGCAAAGCTC
TCTTTTGTGTCCCGACCTCCGCTCTTATGCCTTGACACTGGCTGCCTCAC
GCTCACGCCTCCTTTTGCATTTTCTCCCGCTCCACAGCTTACACCAATAA
GACCGCATCAAGCAAGTCATGTTCAAGCACTTTTCGCTGCTGCTCCTCCT
CCTCTCCCTCTTCTCCTTGACCTGCTGCGAGGCCTTCCACGGCGTGCATC
CTCTGCCGAACCAGGCCAGGCTTGCCTCCCCGCGTGCCAAGACCCAAGCC
CAGCCTCTTTTTCGGAGCCCCCCGCAACGAGCCGCCTTGGTGCGTCGGGA
GGTCATCGCCATCATCCCCCAGGTCCTTTTCGTGGCGGCGTGTGCCGGCG
gtaagtacaggagcgagagatggagggattgacgaagcggatgtgtaatt
gaatgaggagtacgccgtgaggtgagcaggggaaaagtgatcgaagaaca
gcttctaagtccatttaaatgccgcagggctggtgcgtaggcggtgaatg
tagagggaaggaaggatgttgatatttacttgtatgattgaatgtctgtc
aagggaaggggagggattatattgcagttctagtttgtttcatttcacac
tcaccgcaacttcccttcactcctccccctccctctcacacagCTGTCTT
TGGATACGTCGCAACGCACATCGATGAGATCGTGGCCAAGCAAAAGGTGG
CGGTTGAGAAGACGATGACTAAACAAAACAACGACTTGAAGAGCGCGCAG
CAGCAGCAGAAGGATGCCATCGACGCGGCAATGAAGAAGCAACAGGACGC
GATCCGCAAAATTCAAGAGCAACAGACCAAACGCTGATCGCCATCATTAT
GGAGGGGATGAGGTGTTTACATAATGTATGGGTCTGATTGTGTTCATAGG
ACGAGGGGGTATGGGGAGGAAGGGGGAGGATGGGGGGGAGGCCGATGATG
TTTTAGTGAGTGAACTCGAAAAGGCGGAGGCACGACATGCTCCATACGCC
ACTACTAAAAAAAAAGAGAAAAGCAAACAAATACTAAAGAGAGGCCACGT
CCGTTTGTTGCCTCCCTCTAACGCTTTCCTTTTCGAGGCTGAGGCGGTCC
AATAATACAAAGGGTCATGTATATCTCACAGGGCATCCCCAGGACGAAAC
TGCAATAAAATCCCGTCCGTTGCCTTCACCAAATGCCTGCAAAGGAATAT
TTCGGAGCCTGAGGTGGTCCACGTTGAGCACGTAGGCAGGGGGGGATATG
GAAAAAATGCCCTGTGTACCGGT
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protein sequence of NO21G00650.1

>NO21G00650.1-protein ID=NO21G00650.1-protein|Name=NO21G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MFKHFSLLLLLLSLFSLTCCEAFHGVHPLPNQARLASPRAKTQAQPLFRS
PPQRAALVRREVIAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVEK
TMTKQNNDLKSAQQQQKDAIDAAMKKQQDAIRKIQEQQTKR*
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Synonyms
Publications