NO21G00650.1, NO21G00650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00650.1
Unique NameNO21G00650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1230
Alignment locationchr21:222476..223998 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:222476..223998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00650.1 vs.
Match: EWM22564.1 (hypothetical protein Naga_100529g4 [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 5.300e-48
Identity = 112/133 (84.21%), Postives = 119/133 (89.47%), Query Frame = 0 
Query:    9 LLLLSLFSLTCCEAFHGVHPLPNQARLASPRAKTQAQPLFRSPPQRAALVRREVIAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVEKTMTKQNNDLKSAQQQQKDAIDAAMKKQQDAIRKIQEQQTKR 142
            LLLL L +L   EAFHGVHPLPNQAR ASPRAK Q+QPL RSP +R AL+RREV+AIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVEKTMTKQN DLKSAQQQQK+AIDAAMKKQQ AI+KIQE Q KR
Sbjct:   41 LLLLFLSTLGWSEAFHGVHPLPNQARYASPRAKVQSQPLARSPSERTALIRREVVAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVEKTMTKQNADLKSAQQQQKEAIDAAMKKQQAAIKKIQEDQNKR 173
The following BLAST results are available for this feature:
BLAST of NO21G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22564.15.300e-4884.21hypothetical protein Naga_100529g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00650NO21G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00650.1NO21G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00650.1.cds1NO21G00650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00650.1.cds2NO21G00650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00650.1 ID=NO21G00650.1|Name=NO21G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
CGTTGTCGTCATGCACGTCCCTGTGTGGTGGGTACGTTAGTCTTGGACAT
GCAAGCAAGGAATGTTGGGTCGTGCGTCTTCGGCGAACAAACTTTGAAAG
GGGGGGGCGCTCTTCCTCCTTGCCTCCTTGCCCTTGCCTTGTCTTGAGCC
TGTCCAGAGCGTGTTTTATTGGCACCATTTGTGCCCTGCATTTGCATACA
GTGTCCATTTGACCAGTACCAGGCCAGGCCACAAGCGGAAAGCAAAGCTC
TCTTTTGTGTCCCGACCTCCGCTCTTATGCCTTGACACTGGCTGCCTCAC
GCTCACGCCTCCTTTTGCATTTTCTCCCGCTCCACAGCTTACACCAATAA
GACCGCATCAAGCAAGTCATGTTCAAGCACTTTTCGCTGCTGCTCCTCCT
CCTCTCCCTCTTCTCCTTGACCTGCTGCGAGGCCTTCCACGGCGTGCATC
CTCTGCCGAACCAGGCCAGGCTTGCCTCCCCGCGTGCCAAGACCCAAGCC
CAGCCTCTTTTTCGGAGCCCCCCGCAACGAGCCGCCTTGGTGCGTCGGGA
GGTCATCGCCATCATCCCCCAGGTCCTTTTCGTGGCGGCGTGTGCCGGCG
CTGTCTTTGGATACGTCGCAACGCACATCGATGAGATCGTGGCCAAGCAA
AAGGTGGCGGTTGAGAAGACGATGACTAAACAAAACAACGACTTGAAGAG
CGCGCAGCAGCAGCAGAAGGATGCCATCGACGCGGCAATGAAGAAGCAAC
AGGACGCGATCCGCAAAATTCAAGAGCAACAGACCAAACGCTGATCGCCA
TCATTATGGAGGGGATGAGGTGTTTACATAATGTATGGGTCTGATTGTGT
TCATAGGACGAGGGGGTATGGGGAGGAAGGGGGAGGATGGGGGGGAGGCC
GATGATGTTTTAGTGAGTGAACTCGAAAAGGCGGAGGCACGACATGCTCC
ATACGCCACTACTAAAAAAAAAGAGAAAAGCAAACAAATACTAAAGAGAG
GCCACGTCCGTTTGTTGCCTCCCTCTAACGCTTTCCTTTTCGAGGCTGAG
GCGGTCCAATAATACAAAGGGTCATGTATATCTCACAGGGCATCCCCAGG
ACGAAACTGCAATAAAATCCCGTCCGTTGCCTTCACCAAATGCCTGCAAA
GGAATATTTCGGAGCCTGAGGTGGTCCACGTTGAGCACGTAGGCAGGGGG
GGATATGGAAAAAATGCCCTGTGTACCGGT
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protein sequence of NO21G00650.1

>NO21G00650.1-protein ID=NO21G00650.1-protein|Name=NO21G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MFKHFSLLLLLLSLFSLTCCEAFHGVHPLPNQARLASPRAKTQAQPLFRS
PPQRAALVRREVIAIIPQVLFVAACAGAVFGYVATHIDEIVAKQKVAVEK
TMTKQNNDLKSAQQQQKDAIDAAMKKQQDAIRKIQEQQTKR*
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mRNA from alignment at chr21:222476..223998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00650.1 ID=NO21G00650.1|Name=NO21G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp|location=Sequence derived from alignment at chr21:222476..223998- (Nannochloropsis oceanica)
CGTTGTCGTCATGCACGTCCCTGTGTGGTGGGTACGTTAGTCTTGGACAT
GCAAGCAAGGAATGTTGGGTCGTGCGTCTTCGGCGAACAAACTTTGAAAG
GGGGGGGCGCTCTTCCTCCTTGCCTCCTTGCCCTTGCCTTGTCTTGAGCC
TGTCCAGAGCGTGTTTTATTGGCACCATTTGTGCCCTGCATTTGCATACA
GTGTCCATTTGACCAGTACCAGGCCAGGCCACAAGCGGAAAGCAAAGCTC
TCTTTTGTGTCCCGACCTCCGCTCTTATGCCTTGACACTGGCTGCCTCAC
GCTCACGCCTCCTTTTGCATTTTCTCCCGCTCCACAGCTTACACCAATAA
GACCGCATCAAGCAAGTCATGTTCAAGCACTTTTCGCTGCTGCTCCTCCT
CCTCTCCCTCTTCTCCTTGACCTGCTGCGAGGCCTTCCACGGCGTGCATC
CTCTGCCGAACCAGGCCAGGCTTGCCTCCCCGCGTGCCAAGACCCAAGCC
CAGCCTCTTTTTCGGAGCCCCCCGCAACGAGCCGCCTTGGTGCGTCGGGA
GGTCATCGCCATCATCCCCCAGGTCCTTTTCGTGGCGGCGTGTGCCGGCG
GTAAGTACAGGAGCGAGAGATGGAGGGATTGACGAAGCGGATGTGTAATT
GAATGAGGAGTACGCCGTGAGGTGAGCAGGGGAAAAGTGATCGAAGAACA
GCTTCTAAGTCCATTTAAATGCCGCAGGGCTGGTGCGTAGGCGGTGAATG
TAGAGGGAAGGAAGGATGTTGATATTTACTTGTATGATTGAATGTCTGTC
AAGGGAAGGGGAGGGATTATATTGCAGTTCTAGTTTGTTTCATTTCACAC
TCACCGCAACTTCCCTTCACTCCTCCCCCTCCCTCTCACACAGCTGTCTT
TGGATACGTCGCAACGCACATCGATGAGATCGTGGCCAAGCAAAAGGTGG
CGGTTGAGAAGACGATGACTAAACAAAACAACGACTTGAAGAGCGCGCAG
CAGCAGCAGAAGGATGCCATCGACGCGGCAATGAAGAAGCAACAGGACGC
GATCCGCAAAATTCAAGAGCAACAGACCAAACGCTGATCGCCATCATTAT
GGAGGGGATGAGGTGTTTACATAATGTATGGGTCTGATTGTGTTCATAGG
ACGAGGGGGTATGGGGAGGAAGGGGGAGGATGGGGGGGAGGCCGATGATG
TTTTAGTGAGTGAACTCGAAAAGGCGGAGGCACGACATGCTCCATACGCC
ACTACTAAAAAAAAAGAGAAAAGCAAACAAATACTAAAGAGAGGCCACGT
CCGTTTGTTGCCTCCCTCTAACGCTTTCCTTTTCGAGGCTGAGGCGGTCC
AATAATACAAAGGGTCATGTATATCTCACAGGGCATCCCCAGGACGAAAC
TGCAATAAAATCCCGTCCGTTGCCTTCACCAAATGCCTGCAAAGGAATAT
TTCGGAGCCTGAGGTGGTCCACGTTGAGCACGTAGGCAGGGGGGGATATG
GAAAAAATGCCCTGTGTACCGGT
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Coding sequence (CDS) from alignment at chr21:222476..223998-

>NO21G00650.1 ID=NO21G00650.1|Name=NO21G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at chr21:222476..223998- (Nannochloropsis oceanica)
ATGTTCAAGCACTTTTCGCTGCTGCTCCTCCTCCTCTCCCTCTTCTCCTT
GACCTGCTGCGAGGCCTTCCACGGCGTGCATCCTCTGCCGAACCAGGCCA
GGCTTGCCTCCCCGCGTGCCAAGACCCAAGCCCAGCCTCTTTTTCGGAGC
CCCCCGCAACGAGCCGCCTTGGTGCGTCGGGAGGTCATCGCCATCATCCC
CCAGGTCCTTTTCGTGGCGGCGTGTGCCGGCGCTGTCTTTGGATACGTCG
CAACGCACATCGATGAGATCGTGGCCAAGCAAAAGGTGGCGGTTGAGAAG
ACGATGACTAAACAAAACAACGACTTGAAGAGCGCGCAGCAGCAGCAGAA
GGATGCCATCGACGCGGCAATGAAGAAGCAACAGGACGCGATCCGCAAAA
TTCAAGAGCAACAGACCAAACGCTGA
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Synonyms
Publications