NO21G00420, NO21G00420 (gene) Nannochloropsis oceanica

Overview
NameNO21G00420
Unique NameNO21G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr21:153449..155041 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:153449..155041 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO21G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00420.1NO21G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|268107gene_9493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00420.1NO21G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00420 ID=NO21G00420|Name=NO21G00420|organism=Nannochloropsis oceanica|type=gene|length=1593bp
ATGCATAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGT
CGCCTCTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTT
TGCCAACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTT
CCTGCTTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTC
GTTTGGAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAG
CAGCAGCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGA
GCACCCACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGG
CGGCGGCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCC
CTCCTTTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCT
GGAGGTGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCAC
CAGCAGCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAAC
CCTCCCTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCC
ATGGAATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCT
GTGCTATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGG
CAAGGCTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATG
GAGGGGATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGA
AGTCACGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAG
AGCTGGAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACA
GGGGCGTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCA
GTTTCGGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTA
TTGTGGAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAG
CGGTTGCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGG
AGGGATGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGG
TGCGGATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACG
GCGGATGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGAC
GACGGCCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGG
AAAGAGGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGA
GTACGGTTTCTTCCGCTGCCCATTTCGGTTACCGGAGAGGGGCAAGAAGA
AGGAGTACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAA
GGAGGGGAGAAAATGAATAATGGAAACATGAATGATACCTTGAAAAGCAT
GAGAAAGGTACGTGACATAAAGAAAGAACTATTAACGTACAGA
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protein sequence of NO21G00420.1

>NO21G00420.1-protein ID=NO21G00420.1-protein|Name=NO21G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MHRTAQPPSSSSPAPAVASAPTPAATAFSFGGTLPTSTNQFTPASSLAPL
PASAPGATAAPAPSPFSFGGGGGGGAGGGATAAAAAPSLTTTTATTPATG
APTPTPGPTLSFAFGGGGGGGSSSSSSSNASILPPFPTLTSPASTAAPSS
GGGSGGALTLPNVSSSTSSTSNSTGKSQPCALQPSLHPALAKDEAGRRFA
MEFQHVALARIHEELMLCYREDLERHEKDLQEMARLEAGVEEGREGWREM
EGMVGGLREGWESVWREVTRVEGKQAVIDGELRELEIMVGVGRGAGAGGT
GAWQQQQQQLLLQQQLQFRQQQQGGGGGGGVDVIVEERAALYGAAVRVDE
RLRRVMGATSELSERLGGMLERRLSDDGSFSQVVRIVNAHQHALEWLART
ADELAREGEEVEWRVRTTAKLSRLMPEGEGGDGERGGGGGGSTFGGKDAG
VRFLPLPISVTGEGQEEGVQQGQRQPEQQQQQQQQQQILGTGGGFFGGR*
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Synonyms
Publications