NO21G00420.1, NO21G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00420.1
Unique NameNO21G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr21:153449..155041 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:153449..155041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO21G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00420NO21G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00420.1NO21G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00420.1.cds1NO21G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00420.1 ID=NO21G00420.1|Name=NO21G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGCATAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGT
CGCCTCTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTT
TGCCAACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTT
CCTGCTTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTC
GTTTGGAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAG
CAGCAGCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGA
GCACCCACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGG
CGGCGGCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCC
CTCCTTTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCT
GGAGGTGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCAC
CAGCAGCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAAC
CCTCCCTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCC
ATGGAATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCT
GTGCTATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGG
CAAGGCTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATG
GAGGGGATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGA
AGTCACGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAG
AGCTGGAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACA
GGGGCGTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCA
GTTTCGGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTA
TTGTGGAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAG
CGGTTGCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGG
AGGGATGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGG
TGCGGATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACG
GCGGATGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGAC
GACGGCCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGG
AAAGAGGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGA
GTACGGTTTCTTCCGCTGCCCATTTCGGTTACCGGAGAGGGGCAAGAAGA
AGGAGTACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAA
GGAGGGGAGAAAATGAATAATGGAAACATGAATGATACCTTGAAAAGCAT
GAGAAAGGTACGTGACATAAAGAAAGAACTATTAACGTACAGA
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protein sequence of NO21G00420.1

>NO21G00420.1-protein ID=NO21G00420.1-protein|Name=NO21G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MHRTAQPPSSSSPAPAVASAPTPAATAFSFGGTLPTSTNQFTPASSLAPL
PASAPGATAAPAPSPFSFGGGGGGGAGGGATAAAAAPSLTTTTATTPATG
APTPTPGPTLSFAFGGGGGGGSSSSSSSNASILPPFPTLTSPASTAAPSS
GGGSGGALTLPNVSSSTSSTSNSTGKSQPCALQPSLHPALAKDEAGRRFA
MEFQHVALARIHEELMLCYREDLERHEKDLQEMARLEAGVEEGREGWREM
EGMVGGLREGWESVWREVTRVEGKQAVIDGELRELEIMVGVGRGAGAGGT
GAWQQQQQQLLLQQQLQFRQQQQGGGGGGGVDVIVEERAALYGAAVRVDE
RLRRVMGATSELSERLGGMLERRLSDDGSFSQVVRIVNAHQHALEWLART
ADELAREGEEVEWRVRTTAKLSRLMPEGEGGDGERGGGGGGSTFGGKDAG
VRFLPLPISVTGEGQEEGVQQGQRQPEQQQQQQQQQQILGTGGGFFGGR*
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mRNA from alignment at chr21:153449..155041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00420.1 ID=NO21G00420.1|Name=NO21G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at chr21:153449..155041- (Nannochloropsis oceanica)
ATGCATAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGT
CGCCTCTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTT
TGCCAACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTT
CCTGCTTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTC
GTTTGGAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAG
CAGCAGCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGA
GCACCCACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGG
CGGCGGCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCC
CTCCTTTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCT
GGAGGTGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCAC
CAGCAGCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAAC
CCTCCCTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCC
ATGGAATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCT
GTGCTATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGG
CAAGGCTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATG
GAGGGGATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGA
AGTCACGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAG
AGCTGGAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACA
GGGGCGTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCA
GTTTCGGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTA
TTGTGGAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAG
CGGTTGCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGG
AGGGATGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGG
TGCGGATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACG
GCGGATGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGAC
GACGGCCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGG
AAAGAGGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGA
GTACGGTTTCTTCCGCTGCCCATTTCGGTTACCGGAGAGGGGCAAGAAGA
AGGAGTACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAA
GGAGGGGAGAAAATGAATAATGGAAACATGAATGATACCTTGAAAAGCAT
GAGAAAGGTACGTGACATAAAGAAAGAACTATTAACGTACAGA
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Coding sequence (CDS) from alignment at chr21:153449..155041-

>NO21G00420.1 ID=NO21G00420.1|Name=NO21G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr21:153449..155041- (Nannochloropsis oceanica)
ATGCATAGGACTGCACAACCACCATCATCATCCTCACCAGCGCCAGCAGT
CGCCTCTGCCCCTACACCAGCAGCCACCGCATTCTCCTTTGGTGGGACTT
TGCCAACTTCTACAAACCAGTTTACCCCCGCTTCTTCTCTCGCCCCTCTT
CCTGCTTCTGCGCCCGGCGCTACCGCTGCTCCGGCTCCTTCTCCCTTTTC
GTTTGGAGGAGGAGGAGGCGGAGGGGCAGGAGGTGGGGCAACAGCGGCAG
CAGCAGCGCCCTCCCTCACGACTACCACAGCGACAACACCAGCAACAGGA
GCACCCACGCCGACTCCTGGGCCCACGTTATCCTTTGCTTTCGGTGGTGG
CGGCGGCGGCGGCAGTAGCAGCAGCAGCAGCAGCAACGCTTCTATTCTCC
CTCCTTTTCCTACACTCACTAGTCCTGCTTCAACCGCGGCCCCCAGCTCT
GGAGGTGGTTCCGGAGGAGCTCTCACCCTTCCAAACGTCAGCAGCAGCAC
CAGCAGCACCAGCAACAGCACTGGCAAATCTCAACCTTGCGCCCTCCAAC
CCTCCCTGCACCCGGCCTTGGCCAAGGATGAGGCAGGACGTCGGTTTGCC
ATGGAATTTCAACACGTTGCGCTCGCACGCATCCATGAAGAGCTTATGCT
GTGCTATAGAGAAGATTTGGAGAGACATGAGAAGGATCTACAGGAGATGG
CAAGGCTGGAGGCGGGGGTGGAGGAAGGAAGGGAGGGTTGGAGGGAGATG
GAGGGGATGGTGGGCGGGTTGAGAGAGGGATGGGAGAGTGTGTGGAGGGA
AGTCACGAGAGTGGAAGGGAAGCAGGCGGTAATCGACGGAGAGCTTCGAG
AGCTGGAAATTATGGTGGGGGTTGGAAGGGGGGCGGGAGCAGGGGGGACA
GGGGCGTGGCAGCAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAATTGCA
GTTTCGGCAGCAGCAGCAGGGAGGAGGGGGAGGAGGAGGGGTTGATGTTA
TTGTGGAAGAACGCGCAGCCTTATATGGGGCGGCTGTTCGAGTGGATGAG
CGGTTGCGAAGGGTCATGGGTGCGACCAGCGAGCTGTCAGAGCGGCTGGG
AGGGATGCTGGAGAGAAGGTTAAGTGATGATGGGTCCTTCTCCCAGGTGG
TGCGGATTGTTAATGCACACCAACATGCCCTCGAGTGGTTGGCAAGGACG
GCGGATGAATTAGCAAGGGAGGGCGAGGAGGTGGAGTGGCGGGTGAGGAC
GACGGCCAAATTGTCGCGGTTGATGCCGGAGGGGGAGGGAGGGGATGGGG
AAAGAGGAGGGGGAGGGGGAGGGAGTACCTTTGGAGGGAAGGATGCGGGA
GTACGGTTTCTTCCGCTGCCCATTTCGGTTACCGGAGAGGGGCAAGAAGA
AGGAGTACAGCAAGGTCAGCGTCAGCCGGAGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAAATATTGGGAACGGGAGGAGGGTTCTTTGGAGGGAGATAA
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Synonyms
Publications