NO21G00360, NO21G00360 (gene) Nannochloropsis oceanica

Overview
NameNO21G00360
Unique NameNO21G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length228
Alignment locationchr21:112461..112688 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeroxisomal trans-2-enoyl-reductase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:112461..112688 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0019166trans-2-enoyl-CoA reductase (NADPH) activity
GO:0016491oxidoreductase activity
Homology
[Close]
BLAST of NO21G00360 vs. NCBI_GenBank
Match: XP_005855615.1 (peroxisomal trans-2-enoyl-CoA reductase [Nannochloropsis gaditana CCMP526] >EKU20746.1 peroxisomal trans-2-enoyl-CoA reductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 82.8 bits (203), Expect = 5.000e-13
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0 
Query:    1 MATAFLASVLHAILAHWCGTAKKVSSSSRTRL----FTLPAKLIGVDGGMGQSKVPLRPQDHEAALWPIYGELPAKAKL 76
            MA AFL+SVL  I AH CGTA++VSS     L      +  + +GVDGGMGQ  +PLRPQDH A+L P+YGELP KA+L
Sbjct:  217 MAGAFLSSVLPCIPAHRCGTAEEVSSLVVFLLSDAAVYITGQNMGVDGGMGQGTIPLRPQDHGASLLPVYGELPMKARL 295
[Close]
BLAST of NO21G00360 vs. NCBI_GenBank
Match: EWM20657.1 (peroxisomal trans-2-enoyl- reductase [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 5.000e-13
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0 
Query:    1 MATAFLASVLHAILAHWCGTAKKVSSSSRTRL----FTLPAKLIGVDGGMGQSKVPLRPQDHEAALWPIYGELPAKAKL 76
            MA AFL+SVL  I AH CGTA++VSS     L      +  + +GVDGGMGQ  +PLRPQDH A+L P+YGELP KA+L
Sbjct:  288 MAGAFLSSVLPCIPAHRCGTAEEVSSLVVFLLSDAAVYITGQNMGVDGGMGQGTIPLRPQDHGASLLPVYGELPMKARL 366
The following BLAST results are available for this feature:
BLAST of NO21G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
Zoom :
x 1
20406080100120140160180200220Expect = 5.00e-13 / Id = 56.96Expect = 5.00e-13 / Id = 56.96SequenceXP_005855615.1EWM20657.1
Match NameE-valueIdentityDescription
XP_005855615.15.000e-1356.96peroxisomal trans-2-enoyl-CoA reductase [Nannochlo... [more]
EWM20657.15.000e-1356.96peroxisomal trans-2-enoyl- reductase [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL029nonsL029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR099ngnoR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00360.1NO21G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674008gene_9499Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00360.1NO21G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00360 ID=NO21G00360|Name=NO21G00360|organism=Nannochloropsis oceanica|type=gene|length=228bp
ATGGCCACTGCCTTTCTCGCTTCCGTCCTCCATGCGATTCTAGCCCATTG
GTGTGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTA
CGTTACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAG
GTCCCTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTATATACGG
GGAGTTGCCAGCGAAGGCAAAGCTCTAG
back to top

protein sequence of NO21G00360.1

>NO21G00360.1-protein ID=NO21G00360.1-protein|Name=NO21G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MATAFLASVLHAILAHWCGTAKKVSSSSRTRLFTLPAKLIGVDGGMGQSK
VPLRPQDHEAALWPIYGELPAKAKL*
back to top
Synonyms
Publications