NO21G00360.1, NO21G00360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00360.1
Unique NameNO21G00360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length228
Alignment locationchr21:112461..112688 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:112461..112688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00360.1 vs.
Match: EWM20657.1 (peroxisomal trans-2-enoyl- reductase [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 5.000e-13
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0 
Query:    1 MATAFLASVLHAILAHWCGTAKKVSSSSRTRLFT----LPAKLIGVDGGMGQSKVPLRPQDHEAALWPIYGELPAKAKL 76
            MA AFL+SVL  I AH CGTA++VSS     L      +  + +GVDGGMGQ  +PLRPQDH A+L P+YGELP KA+L
Sbjct:  288 MAGAFLSSVLPCIPAHRCGTAEEVSSLVVFLLSDAAVYITGQNMGVDGGMGQGTIPLRPQDHGASLLPVYGELPMKARL 366
The following BLAST results are available for this feature:
BLAST of NO21G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20406080100120140160180200220Expect = 5.00e-13 / Id = 56.96SequenceEWM20657.1
Match NameE-valueIdentityDescription
EWM20657.15.000e-1356.96peroxisomal trans-2-enoyl- reductase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00360NO21G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00360.1NO21G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00360.1.cds1NO21G00360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00360.1 ID=NO21G00360.1|Name=NO21G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=228bp
ATGGCCACTGCCTTTCTCGCTTCCGTCCTCCATGCGATTCTAGCCCATTG
GTGTGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTA
CGTTACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAG
GTCCCTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTATATACGG
GGAGTTGCCAGCGAAGGCAAAGCTCTAG
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protein sequence of NO21G00360.1

>NO21G00360.1-protein ID=NO21G00360.1-protein|Name=NO21G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MATAFLASVLHAILAHWCGTAKKVSSSSRTRLFTLPAKLIGVDGGMGQSK
VPLRPQDHEAALWPIYGELPAKAKL*
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mRNA from alignment at chr21:112461..112688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00360.1 ID=NO21G00360.1|Name=NO21G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=228bp|location=Sequence derived from alignment at chr21:112461..112688+ (Nannochloropsis oceanica)
ATGGCCACTGCCTTTCTCGCTTCCGTCCTCCATGCGATTCTAGCCCATTG
GTGTGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTA
CGTTACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAG
GTCCCTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTATATACGG
GGAGTTGCCAGCGAAGGCAAAGCTCTAG
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Coding sequence (CDS) from alignment at chr21:112461..112688+

>NO21G00360.1 ID=NO21G00360.1|Name=NO21G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at chr21:112461..112688+ (Nannochloropsis oceanica)
ATGGCCACTGCCTTTCTCGCTTCCGTCCTCCATGCGATTCTAGCCCATTG
GTGTGGCACCGCCAAGAAAGTGAGCTCATCCTCTCGGACGCGGCTGTTTA
CGTTACCGGCCAAGCTCATAGGGGTGGATGGAGGAATGGGCCAGAGCAAG
GTCCCTCTGCGGCCACAAGACCACGAAGCGGCACTATGGCCTATATACGG
GGAGTTGCCAGCGAAGGCAAAGCTCTAG
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Synonyms
Publications