NO21G00340, NO21G00340 (gene) Nannochloropsis oceanica

Overview
NameNO21G00340
Unique NameNO21G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1978
Alignment locationchr21:107466..109443 +

Link to JBrowse

Properties
Property NameValue
DescriptionExosome complex exonuclease rrp42
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:107466..109443 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Homology
BLAST of NO21G00340 vs. NCBI_GenBank
Match: EWM20680.1 (exosome complex exonuclease rrp42 [Nannochloropsis gaditana])

HSP 1 Score: 436.0 bits (1120), Expect = 9.400e-119
Identity = 216/303 (71.29%), Postives = 261/303 (86.14%), Query Frame = 0
Query:    1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGISGEI 304
            MLS ARSRTEL F+EAGV QDVRADGRRR+DYR+ISV VDV PS++GSARVILG  ATEVLAVVKA+LSQPS+E  + G LE+N+EVSPLALL++ET R+ EDLNA+LT AFE+FL+ + ALDMEALCITPG+++WT+YLDV++LEGQGN+LD +S AAYAALRTA LP +DAISGGLD+AN+PIEDFELSSTDI +A  LP++NLPICI+LNRIGNF+VVDTAA+EEAEGGV+ R+TVAVDETGH+CG++KGAGGGFP  E+  + QH VPIA KVLEGLKA +GL +     G E  S ++
Sbjct:    1 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKL 303          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_005855007.1 (exosome complex rna-binding protein rrp42, partial [Nannochloropsis gaditana CCMP526] >EKU21353.1 exosome complex rna-binding protein rrp42, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.5 bits (641), Expect = 3.300e-63
Identity = 119/173 (68.79%), Postives = 147/173 (84.97%), Query Frame = 0
Query:  131 PGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGISGEI 304
            PG+++WT+YLDV++LEGQGN+LD +S AAYAALRTA LP +DAISGGLD+AN+PIEDFELSSTDI +A  LP++NLPICI+LNRIGNF+VVDTAA+EEAEGGV+ R+TVAVDETGH+CG++KGAGGGFP  E+  + QH VPIA KVLEGLKA +GL +     G E  S ++
Sbjct:    1 PGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKL 173          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: GAQ84934.1 (3'-5'-exoribonuclease family protein [Klebsormidium nitens])

HSP 1 Score: 174.9 bits (442), Expect = 3.900e-40
Identity = 106/289 (36.68%), Postives = 158/289 (54.67%), Query Frame = 0
Query:    7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLI-----RAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELS-STDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKE 290
            S  EL F+E G+AQD+R DGR R D+R  S+ +DV   A+GSARV L  GAT++LA +KAEL  P  E P  G+LE+ +E+SP A    E  R GE+L+A+L KA E            A+D+ AL +  G+  W +Y DVL+L   GN+LD  +    AAL   R+PK++ ++G  D      E+ EL  + D  E   +    +P+ ++L ++G   + D   DEEA+  +   ++VAV+E G +CG+ K    G     +  M      I  ++L  + A + L E
Sbjct:    5 SAAELSFLEGGIAQDLRNDGRGREDFRSFSIQLDVISQASGSARVRL--GATDILASIKAELGSPPAEFPHLGRLELAVEISPTAGPEFE-GRGGEELSAELGKALERSFAGGANGTGAAVDLAALSVVEGKTCWVLYADVLVLNADGNILDASAIGIKAALSNTRIPKVEVLAGEGD------EEGELELNDDPDECARVSTAAVPLIVTLTKVGRHYIADATGDEEAQ--MSSALSVAVNEKGQLCGVTKRGSAGIDPSVISDMLSVARRIGKRLLAKVDAEISLAE 282          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_024360318.1 (exosome complex component RRP42-like [Physcomitrella patens] >PNR30295.1 hypothetical protein PHYPA_026611 [Physcomitrella patens])

HSP 1 Score: 174.1 bits (440), Expect = 6.700e-40
Identity = 103/290 (35.52%), Postives = 155/290 (53.45%), Query Frame = 0
Query:    5 ARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLI-----RAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKE 290
            A S  E+ +IE G+AQ++R+DGR R+D+R I++   V P ANGS+R  +  G T+V+  VKAEL  P    P  G +++ +E SP A    E  R GE+L+ +LT+  E   +        A+D+  L I  G+  W + +D L+L   GNLLD +S A  AALR   LPK++ ++GG +  +  IE       D  E+  L + N P+ I+L ++G    VD  A+EE+   ++  V+VAV+  G VCG+ K  G G     +  M      IAL  +  L   +   E
Sbjct:    3 AISAAEVSYIEGGIAQNLRSDGRGRLDFRNIAITTGVIPQANGSSRCKV--GGTDVMVSVKAELGNPPKGRPSHGGMQIKVECSPTANPEFE-GRGGEELSLELTRGLERSFLGGPNGSGAAIDLSTLRIVDGKTCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPKVEVVAGGAEDEDPEIE------VDDEESSQLDVSNAPVIITLTKVGKSYFVDATAEEESH--MRSAVSVAVNRKGVVCGVTKRGGEGLEPSTIIDMISVAQQIALTYIPALDLQIAAAE 281          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_012758378.1 (hypothetical protein SAMD00019534_009570 [Acytostelium subglobosum LB1] >GAM17782.1 hypothetical protein SAMD00019534_009570 [Acytostelium subglobosum LB1])

HSP 1 Score: 171.0 bits (432), Expect = 5.700e-39
Identity = 96/279 (34.41%), Postives = 152/279 (54.48%), Query Frame = 0
Query:    7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVL 286
            S +E  +I+ GV   VRADGR R+DYR   + V     A GSAR++L    T V+  +KA+++ P+ + P  G L VN++  P A    E  +  E +N +L K  E  L +  ALD+ +LCI PG++ W +Y+D ++L+  GNL D +S A  AAL   RLP+I  + G  +       +FE+S  D      + I N+PIC++L +IG   V+D+  +EE    +  R+T+ V+   ++C I KG   G  +  +  M        L++L+ + A+L
Sbjct:   96 SPSETYYIQQGVENGVRADGRTRLDYRHFELDVGEIAHACGSARILLDN--THVIVGIKADIASPTSDAPNHGMLNVNVDCCPSASPEFE-GKGAEYINVELAKQLERLLTQGNALDLASLCIVPGKYCWNLYIDAIVLDSGGNLFDALSIATRAALYNTRLPQIKIVQGEHEQV-----EFEVSE-DPESYSSVSIDNVPICVTLTKIGTQFVLDSTLEEEL--CMDARLTIGVNRRSNICSIQKGGVSGLDSSTINQMITVAKQAGLQILKSMDAIL 363          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: PTQ41841.1 (hypothetical protein MARPO_0032s0043 [Marchantia polymorpha])

HSP 1 Score: 170.6 bits (431), Expect = 7.400e-39
Identity = 105/294 (35.71%), Postives = 162/294 (55.10%), Query Frame = 0
Query:    1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFE-TFLIRAE----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKE 290
            ++ L  S  E  +I  G+A D+R DGR R  +R+ S+   + P ANGSAR+ L  G T+V+A VKAEL  P    P  GKLE+N+E SP A    E  R GE+L+ DL++A + +FL  A     A+D+ +L +  G+  W +Y D L+L   GNLLD +S A  AAL    LPK++ I+ G +  +D   DFEL+  + T    +     P+ ++L ++G   +VD  A+EE++  +   V+VAV++ G +CG+ K  G G     L  M      ++  ++  + A +   E
Sbjct:    2 VVGLGLSSAEKSYIAGGIAVDLRGDGRGRHHFRDFSIDTSIIPQANGSARLRL--GGTDVIASVKAELCAPPPGRPHHGKLEINVECSPTAAPEFE-GRGGEELSMDLSRALQRSFLGGASGAGAAIDLASLVVLEGKLCWMLYFDGLVLSSDGNLLDALSIAMKAALSNCGLPKVE-ITSGTNPEDD--ADFELNEEEFTP---VDTSRFPVIVTLTKVGKHYIVDATAEEESQ--MTAAVSVAVNKKGSICGLTKRGGTGLDPSVLLDMISVAKRVSQTLITSIDAEISAAE 284          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: OAY71227.1 (Exosome complex component RRP42 [Ananas comosus])

HSP 1 Score: 168.7 bits (426), Expect = 2.800e-38
Identity = 99/291 (34.02%), Postives = 163/291 (56.01%), Query Frame = 0
Query:    7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAE-----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGN 293
            S  E  FI  G+AQD+R+DGRRR+ Y  ISV   V P ANGSARV L  GAT+V+A +KAEL +PS   P +GK+ ++++ SP A    E  R GE+L+++L+ A E  L+  +     A+D+ +L +  G+  W +Y+D L++   GNLLDT++ A   AL    +PK++ +  G      P +  E+  +D  E +      +P+ I+L ++G   +VD  A+EE++  +   V+V+V+  G +CG+ K  G G     +  M      ++ +++  L + +   E  +
Sbjct:   67 SEGERRFIRGGIAQDLRSDGRRRLQYCPISVQTGVIPQANGSARVRL--GATDVIATIKAELGKPSLLQPDKGKVSIHVDCSPTAAPMFE-GRGGEELSSELSLALERCLLGGKSGAGAAIDLSSLIVLDGKVCWDLYIDGLVISSDGNLLDTLAAAIKVALSNTGIPKVNIVYDG-----SPDDQPEVDVSD-EEFLQFDTSGVPVVITLTKVGKHYIVDATAEEESQ--MSSAVSVSVNRNGQICGLIKRGGTGLDPSVILDMISVAKHVSKELISMLDSEIAAAEASD 346          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_020083453.1 (exosome complex component RRP42-like [Ananas comosus])

HSP 1 Score: 168.7 bits (426), Expect = 2.800e-38
Identity = 99/291 (34.02%), Postives = 163/291 (56.01%), Query Frame = 0
Query:    7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAE-----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGN 293
            S  E  FI  G+AQD+R+DGRRR+ Y  ISV   V P ANGSARV L  GAT+V+A +KAEL +PS   P +GK+ ++++ SP A    E  R GE+L+++L+ A E  L+  +     A+D+ +L +  G+  W +Y+D L++   GNLLDT++ A   AL    +PK++ +  G      P +  E+  +D  E +      +P+ I+L ++G   +VD  A+EE++  +   V+V+V+  G +CG+ K  G G     +  M      ++ +++  L + +   E  +
Sbjct:    5 SEGERRFIRGGIAQDLRSDGRRRLQYCPISVQTGVIPQANGSARVRL--GATDVIATIKAELGKPSLLQPDKGKVSIHVDCSPTAAPMFE-GRGGEELSSELSLALERCLLGGKSGAGAAIDLSSLIVLDGKVCWDLYIDGLVISSDGNLLDTLAAAIKVALSNTGIPKVNIVYDG-----SPDDQPEVDVSD-EEFLQFDTSGVPVVITLTKVGKHYIVDATAEEESQ--MSSAVSVSVNRNGQICGLIKRGGTGLDPSVILDMISVAKHVSKELISMLDSEIAAAEASD 284          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: OAE23431.1 (hypothetical protein AXG93_961s1290 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 168.3 bits (425), Expect = 3.700e-38
Identity = 103/271 (38.01%), Postives = 154/271 (56.83%), Query Frame = 0
Query:    1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFE-TFLIRAE----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGM 267
            ++ L  S  E  +I  G+A D+R DGR R  +R+ S+   + P ANGSAR+ L  G T+V+A VKAEL  P    P  GKLE+N+E SP A    E  R GE+L+ DL++A + +FL  A     A+D+ +L +  G+  W +Y D L+L   GNLLD +S A  AAL    LPK++ I+ G +  +D   DFEL+  + T    +     P+ ++L ++G   +VD  A+EE++  +   V+VAV++ G +CG+ K  G G     L  M
Sbjct:    2 VVGLGLSSAEKSYIAGGIAVDLRGDGRGRHHFRDFSIDTSIIPQANGSARLRL--GGTDVIASVKAELCAPPPGRPHHGKLEINVECSPTAAPEFE-GRGGEELSMDLSRALQRSFLGGASGAGAAIDLASLVVLEGKLCWMLYFDGLVLSSDGNLLDALSIAMKAALSNCGLPKVE-ITSGTNPEDD--ADFELNEEEFTP---VDTSRFPVIVTLTKVGKHYIVDATAEEESQ--MTAAVSVAVNKKGSICGLTKRGGTGLDPSVLLDM 261          
BLAST of NO21G00340 vs. NCBI_GenBank
Match: GAX97457.1 (Hypothetical protein PINS_005366 [Pythium insidiosum])

HSP 1 Score: 167.9 bits (424), Expect = 4.800e-38
Identity = 95/281 (33.81%), Postives = 153/281 (54.45%), Query Frame = 0
Query:    7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGL 288
            S++E  +I  G+A DVRADGRRR+ YR +SV   +   +NGSARV L    T++LA VK E++ P  E P  G ++V +  SP ++  + + R  E+LN +L++     L    ++D+E  CI PG   W +++DV + E  GNL D +S A YAAL     P +  +  G++  +  IE      +D      +   N PIC++L ++G++ + D   +EE    +  +V+VAVD  G+VCG+ K   G    +E+Q M       + ++   L+A L +
Sbjct:  464 SQSERLYIVDGIAADVRADGRRRLAYRNMSVETSLLSQSNGSARVSLENSGTDILASVKLEVTAPRPEAPXAGVVQVAVACSP-SVSAKLSGRAAEELNVELSQQMTRLLCSCPSVDLEQFCIVPGESVWGLHVDVTVFESTGNLPDLMSMAIYAALNDTVFPAVRLV--GVEGEDKTIE----VESDPAVGTRMDASNWPICVTLCKVGDYFITDPMQEEEL--CMTAQVSVAVDPLGNVCGVQKSGSGAMEMKEMQHMVDEACERSKELFRALQAALSV 735          
The following BLAST results are available for this feature:
BLAST of NO21G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20680.19.400e-11971.29exosome complex exonuclease rrp42 [Nannochloropsis... [more]
XP_005855007.13.300e-6368.79exosome complex rna-binding protein rrp42, partial... [more]
GAQ84934.13.900e-4036.683'-5'-exoribonuclease family protein [Klebsormidiu... [more]
XP_024360318.16.700e-4035.52exosome complex component RRP42-like [Physcomitrel... [more]
XP_012758378.15.700e-3934.41hypothetical protein SAMD00019534_009570 [Acytoste... [more]
PTQ41841.17.400e-3935.71hypothetical protein MARPO_0032s0043 [Marchantia p... [more]
OAY71227.12.800e-3834.02Exosome complex component RRP42 [Ananas comosus][more]
XP_020083453.12.800e-3834.02exosome complex component RRP42-like [Ananas comos... [more]
OAE23431.13.700e-3838.01hypothetical protein AXG93_961s1290 [Marchantia po... [more]
GAX97457.14.800e-3833.81Hypothetical protein PINS_005366 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL029nonsL029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR099ngnoR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007420NSK007420Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00340.1NO21G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606197gene_9500Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100704g1gene9725Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00340.1NO21G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00340 ID=NO21G00340|Name=NO21G00340|organism=Nannochloropsis oceanica|type=gene|length=1978bp
CCACAGCGCAAAACCTCCTGCAATATGCTTTCCTTGGCCCGATCTCGCAC
AGAGCTAGACTTCATCGAAGCAGGGGTAGCACAGGACGTTCGCGCCGACG
GCCGCCGTCGCATCGACTACCGGGAAATCAGCGTAGCTGTGGACGTGCAC
CCATCGGCCAATGGCTCTGCACGCGTCATCCTCGGGCAAGGGGCCACTGA
GGTCCTTGCCGTCGTCAAAGCTGAGCTCTCCCAGCCGTCGCACGAACACC
CCAAGCGAGGCAAGCTGGAAGTGAATATCGAAGTCTCCCCTTTGGCGTTG
CTGCACCGCGAGACGGCCCGGGACGGGGAGGACCTCAACGCCGACTTGAC
CAAGGCATTTGAGACATTCCTAATACGGGCAGAAGCCCTGGACATGGAAG
CGCTATGCATTACTCCAGGAAGGTTTAGCTGGACAGTATACCTCGATGTC
TTGATATTAGAAGGACAAGGTAATTTGCTTGACACCATCTCCTTCGCCGC
CTATGCTGCCCTACGAACGGCGCGCCTTCCCAAAATCGATGCCATATCAG
GCGGACTCGACGCAGCCAATGACCCCATCGAAGACTTCGAATTGTCATCC
ACGGACATCACGGAAGCCATTGGCCTGCCCATCAAGAATCTCCCCATCTG
CATCTCTCTCAATCGCATTGGCAACTTTTTGGTAGTCGACACGGCTGCGG
ACGAGGAAGCGGAGGGAGGGGTAAAAGGGCGAGTGACAGTGGCAGTGGAT
GAAACAGGGCATGTTTGTGGTATTCACAAAGGGGCAGGAGGGGGGTTTCC
TGCACGGGAGCTGCAGGGTATGACGCAGCATGTGGTGCCGATTGCTCTGA
AAGTACTGGAGGGGCTTAAAGCAGTGCTTGGTTTGAAGGAAGGGGGAAAT
GGGAATGGACAAGAGGGGATTAGCGGGGAGATACCACGATAGATCAAAAT
GAGGGAATGGAGAATAGATGATCAAAGAACTTGTAACATTATCAAACCAA
GGGTAAGAAGACAGGTGTGCGGGGGGGGGGGGGAGATGAACGGTTGTGGC
GTTGGATTATGTCTTTGCTCTTTTTTTGCGGTCGATGCTCGTCTTCTCGA
CCTGATACATCTCATATCGTTTTGGAACGAGAGTGCCCTCATTCAATGTC
TGCTCTCAACTTCTGTTCCAGAATGTATCTCTTCTTAGTTAGTGTCCTCA
TTCAATGTGTGCTCTCAACTTCAGTTCCAGAATGCGTCTCTTAGTTCGGG
TCTGCCCTGCTCCTGAGTAGTGCACGCATGCGGTCAAGTAGAGCAAAGTC
ACAGAAGATATGGAGGGTCGGCGTACGAGATTATCGGCTTTTTGTTGCAA
ATGCAGCCTTACGTGCGGAAGTGAGGCGCTGCTTCACCATGTGCTTGAGG
GCAAATGAATGCCATGGCCCTCACCCAACACTTGATTGCCCATTCATTGC
ATTGCCATGAGGGAGATTGTTCGTTATCGTGGCGTGAATGGGTCTCAGAC
CAGCAAACAAGCTGGCTCGGCACGTCCCGGTATAATTTTATGCGTACATT
ATGACCTATTCACAAGCACTTCATTTATTCGATGCGGGGGACGGCTTCGA
TGAGGAAAAATGTTGAGGGGGAGAAAGGGAGGGTAAGACAAAAGCAAGAA
GATAGCGTCGTTTAAGGTCGCAGATCTTCCCAAAAATGGCAAATGGCAAC
GTTCTTTCTTGTAGTTTCCTACAATCCTAAGTATCGCGTTCAACCACAAG
TGTTTACACAAGTCCGCCACGTCACAGGATTACATACGAGGAATGGGGGA
AAGCCTTCCAACAATAAAGTGTTGCATACTCTTCCCTTATTCCTCCGACT
TGTAGGTGACTTTCTCAGGGCTTTCACCCGCAAAGTCCTTCGATGGCCCA
TACAGGGCTAGAAGGAGGGGGGGGAAGAGAAAGAGGAGGTCACAGGGGAG
GCAACTTATTCAGCGTCTGCATCACTTG
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protein sequence of NO21G00340.1

>NO21G00340.1-protein ID=NO21G00340.1-protein|Name=NO21G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSAR
VILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARD
GEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGN
LLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIG
LPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGI
HKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGIS
GEIPR*
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Synonyms
Publications