NO21G00340, NO21G00340 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G00340 vs. NCBI_GenBank
Match: EWM20680.1 (exosome complex exonuclease rrp42 [Nannochloropsis gaditana]) HSP 1 Score: 436.0 bits (1120), Expect = 9.400e-119 Identity = 216/303 (71.29%), Postives = 261/303 (86.14%), Query Frame = 0
Query: 1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGISGEI 304
MLS ARSRTEL F+EAGV QDVRADGRRR+DYR+ISV VDV PS++GSARVILG ATEVLAVVKA+LSQPS+E + G LE+N+EVSPLALL++ET R+ EDLNA+LT AFE+FL+ + ALDMEALCITPG+++WT+YLDV++LEGQGN+LD +S AAYAALRTA LP +DAISGGLD+AN+PIEDFELSSTDI +A LP++NLPICI+LNRIGNF+VVDTAA+EEAEGGV+ R+TVAVDETGH+CG++KGAGGGFP E+ + QH VPIA KVLEGLKA +GL + G E S ++
Sbjct: 1 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKL 303
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_005855007.1 (exosome complex rna-binding protein rrp42, partial [Nannochloropsis gaditana CCMP526] >EKU21353.1 exosome complex rna-binding protein rrp42, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 251.5 bits (641), Expect = 3.300e-63 Identity = 119/173 (68.79%), Postives = 147/173 (84.97%), Query Frame = 0
Query: 131 PGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGISGEI 304
PG+++WT+YLDV++LEGQGN+LD +S AAYAALRTA LP +DAISGGLD+AN+PIEDFELSSTDI +A LP++NLPICI+LNRIGNF+VVDTAA+EEAEGGV+ R+TVAVDETGH+CG++KGAGGGFP E+ + QH VPIA KVLEGLKA +GL + G E S ++
Sbjct: 1 PGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKL 173
BLAST of NO21G00340 vs. NCBI_GenBank
Match: GAQ84934.1 (3'-5'-exoribonuclease family protein [Klebsormidium nitens]) HSP 1 Score: 174.9 bits (442), Expect = 3.900e-40 Identity = 106/289 (36.68%), Postives = 158/289 (54.67%), Query Frame = 0
Query: 7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLI-----RAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELS-STDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKE 290
S EL F+E G+AQD+R DGR R D+R S+ +DV A+GSARV L GAT++LA +KAEL P E P G+LE+ +E+SP A E R GE+L+A+L KA E A+D+ AL + G+ W +Y DVL+L GN+LD + AAL R+PK++ ++G D E+ EL + D E + +P+ ++L ++G + D DEEA+ + ++VAV+E G +CG+ K G + M I ++L + A + L E
Sbjct: 5 SAAELSFLEGGIAQDLRNDGRGREDFRSFSIQLDVISQASGSARVRL--GATDILASIKAELGSPPAEFPHLGRLELAVEISPTAGPEFE-GRGGEELSAELGKALERSFAGGANGTGAAVDLAALSVVEGKTCWVLYADVLVLNADGNILDASAIGIKAALSNTRIPKVEVLAGEGD------EEGELELNDDPDECARVSTAAVPLIVTLTKVGRHYIADATGDEEAQ--MSSALSVAVNEKGQLCGVTKRGSAGIDPSVISDMLSVARRIGKRLLAKVDAEISLAE 282
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_024360318.1 (exosome complex component RRP42-like [Physcomitrella patens] >PNR30295.1 hypothetical protein PHYPA_026611 [Physcomitrella patens]) HSP 1 Score: 174.1 bits (440), Expect = 6.700e-40 Identity = 103/290 (35.52%), Postives = 155/290 (53.45%), Query Frame = 0
Query: 5 ARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLI-----RAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKE 290
A S E+ +IE G+AQ++R+DGR R+D+R I++ V P ANGS+R + G T+V+ VKAEL P P G +++ +E SP A E R GE+L+ +LT+ E + A+D+ L I G+ W + +D L+L GNLLD +S A AALR LPK++ ++GG + + IE D E+ L + N P+ I+L ++G VD A+EE+ ++ V+VAV+ G VCG+ K G G + M IAL + L + E
Sbjct: 3 AISAAEVSYIEGGIAQNLRSDGRGRLDFRNIAITTGVIPQANGSSRCKV--GGTDVMVSVKAELGNPPKGRPSHGGMQIKVECSPTANPEFE-GRGGEELSLELTRGLERSFLGGPNGSGAAIDLSTLRIVDGKTCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPKVEVVAGGAEDEDPEIE------VDDEESSQLDVSNAPVIITLTKVGKSYFVDATAEEESH--MRSAVSVAVNRKGVVCGVTKRGGEGLEPSTIIDMISVAQQIALTYIPALDLQIAAAE 281
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_012758378.1 (hypothetical protein SAMD00019534_009570 [Acytostelium subglobosum LB1] >GAM17782.1 hypothetical protein SAMD00019534_009570 [Acytostelium subglobosum LB1]) HSP 1 Score: 171.0 bits (432), Expect = 5.700e-39 Identity = 96/279 (34.41%), Postives = 152/279 (54.48%), Query Frame = 0
Query: 7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVL 286
S +E +I+ GV VRADGR R+DYR + V A GSAR++L T V+ +KA+++ P+ + P G L VN++ P A E + E +N +L K E L + ALD+ +LCI PG++ W +Y+D ++L+ GNL D +S A AAL RLP+I + G + +FE+S D + I N+PIC++L +IG V+D+ +EE + R+T+ V+ ++C I KG G + + M L++L+ + A+L
Sbjct: 96 SPSETYYIQQGVENGVRADGRTRLDYRHFELDVGEIAHACGSARILLDN--THVIVGIKADIASPTSDAPNHGMLNVNVDCCPSASPEFE-GKGAEYINVELAKQLERLLTQGNALDLASLCIVPGKYCWNLYIDAIVLDSGGNLFDALSIATRAALYNTRLPQIKIVQGEHEQV-----EFEVSE-DPESYSSVSIDNVPICVTLTKIGTQFVLDSTLEEEL--CMDARLTIGVNRRSNICSIQKGGVSGLDSSTINQMITVAKQAGLQILKSMDAIL 363
BLAST of NO21G00340 vs. NCBI_GenBank
Match: PTQ41841.1 (hypothetical protein MARPO_0032s0043 [Marchantia polymorpha]) HSP 1 Score: 170.6 bits (431), Expect = 7.400e-39 Identity = 105/294 (35.71%), Postives = 162/294 (55.10%), Query Frame = 0
Query: 1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFE-TFLIRAE----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKE 290
++ L S E +I G+A D+R DGR R +R+ S+ + P ANGSAR+ L G T+V+A VKAEL P P GKLE+N+E SP A E R GE+L+ DL++A + +FL A A+D+ +L + G+ W +Y D L+L GNLLD +S A AAL LPK++ I+ G + +D DFEL+ + T + P+ ++L ++G +VD A+EE++ + V+VAV++ G +CG+ K G G L M ++ ++ + A + E
Sbjct: 2 VVGLGLSSAEKSYIAGGIAVDLRGDGRGRHHFRDFSIDTSIIPQANGSARLRL--GGTDVIASVKAELCAPPPGRPHHGKLEINVECSPTAAPEFE-GRGGEELSMDLSRALQRSFLGGASGAGAAIDLASLVVLEGKLCWMLYFDGLVLSSDGNLLDALSIAMKAALSNCGLPKVE-ITSGTNPEDD--ADFELNEEEFTP---VDTSRFPVIVTLTKVGKHYIVDATAEEESQ--MTAAVSVAVNKKGSICGLTKRGGTGLDPSVLLDMISVAKRVSQTLITSIDAEISAAE 284
BLAST of NO21G00340 vs. NCBI_GenBank
Match: OAY71227.1 (Exosome complex component RRP42 [Ananas comosus]) HSP 1 Score: 168.7 bits (426), Expect = 2.800e-38 Identity = 99/291 (34.02%), Postives = 163/291 (56.01%), Query Frame = 0
Query: 7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAE-----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGN 293
S E FI G+AQD+R+DGRRR+ Y ISV V P ANGSARV L GAT+V+A +KAEL +PS P +GK+ ++++ SP A E R GE+L+++L+ A E L+ + A+D+ +L + G+ W +Y+D L++ GNLLDT++ A AL +PK++ + G P + E+ +D E + +P+ I+L ++G +VD A+EE++ + V+V+V+ G +CG+ K G G + M ++ +++ L + + E +
Sbjct: 67 SEGERRFIRGGIAQDLRSDGRRRLQYCPISVQTGVIPQANGSARVRL--GATDVIATIKAELGKPSLLQPDKGKVSIHVDCSPTAAPMFE-GRGGEELSSELSLALERCLLGGKSGAGAAIDLSSLIVLDGKVCWDLYIDGLVISSDGNLLDTLAAAIKVALSNTGIPKVNIVYDG-----SPDDQPEVDVSD-EEFLQFDTSGVPVVITLTKVGKHYIVDATAEEESQ--MSSAVSVSVNRNGQICGLIKRGGTGLDPSVILDMISVAKHVSKELISMLDSEIAAAEASD 346
BLAST of NO21G00340 vs. NCBI_GenBank
Match: XP_020083453.1 (exosome complex component RRP42-like [Ananas comosus]) HSP 1 Score: 168.7 bits (426), Expect = 2.800e-38 Identity = 99/291 (34.02%), Postives = 163/291 (56.01%), Query Frame = 0
Query: 7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAE-----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGN 293
S E FI G+AQD+R+DGRRR+ Y ISV V P ANGSARV L GAT+V+A +KAEL +PS P +GK+ ++++ SP A E R GE+L+++L+ A E L+ + A+D+ +L + G+ W +Y+D L++ GNLLDT++ A AL +PK++ + G P + E+ +D E + +P+ I+L ++G +VD A+EE++ + V+V+V+ G +CG+ K G G + M ++ +++ L + + E +
Sbjct: 5 SEGERRFIRGGIAQDLRSDGRRRLQYCPISVQTGVIPQANGSARVRL--GATDVIATIKAELGKPSLLQPDKGKVSIHVDCSPTAAPMFE-GRGGEELSSELSLALERCLLGGKSGAGAAIDLSSLIVLDGKVCWDLYIDGLVISSDGNLLDTLAAAIKVALSNTGIPKVNIVYDG-----SPDDQPEVDVSD-EEFLQFDTSGVPVVITLTKVGKHYIVDATAEEESQ--MSSAVSVSVNRNGQICGLIKRGGTGLDPSVILDMISVAKHVSKELISMLDSEIAAAEASD 284
BLAST of NO21G00340 vs. NCBI_GenBank
Match: OAE23431.1 (hypothetical protein AXG93_961s1290 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 168.3 bits (425), Expect = 3.700e-38 Identity = 103/271 (38.01%), Postives = 154/271 (56.83%), Query Frame = 0
Query: 1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFE-TFLIRAE----ALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGM 267
++ L S E +I G+A D+R DGR R +R+ S+ + P ANGSAR+ L G T+V+A VKAEL P P GKLE+N+E SP A E R GE+L+ DL++A + +FL A A+D+ +L + G+ W +Y D L+L GNLLD +S A AAL LPK++ I+ G + +D DFEL+ + T + P+ ++L ++G +VD A+EE++ + V+VAV++ G +CG+ K G G L M
Sbjct: 2 VVGLGLSSAEKSYIAGGIAVDLRGDGRGRHHFRDFSIDTSIIPQANGSARLRL--GGTDVIASVKAELCAPPPGRPHHGKLEINVECSPTAAPEFE-GRGGEELSMDLSRALQRSFLGGASGAGAAIDLASLVVLEGKLCWMLYFDGLVLSSDGNLLDALSIAMKAALSNCGLPKVE-ITSGTNPEDD--ADFELNEEEFTP---VDTSRFPVIVTLTKVGKHYIVDATAEEESQ--MTAAVSVAVNKKGSICGLTKRGGTGLDPSVLLDM 261
BLAST of NO21G00340 vs. NCBI_GenBank
Match: GAX97457.1 (Hypothetical protein PINS_005366 [Pythium insidiosum]) HSP 1 Score: 167.9 bits (424), Expect = 4.800e-38 Identity = 95/281 (33.81%), Postives = 153/281 (54.45%), Query Frame = 0
Query: 7 SRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGL 288
S++E +I G+A DVRADGRRR+ YR +SV + +NGSARV L T++LA VK E++ P E P G ++V + SP ++ + + R E+LN +L++ L ++D+E CI PG W +++DV + E GNL D +S A YAAL P + + G++ + IE +D + N PIC++L ++G++ + D +EE + +V+VAVD G+VCG+ K G +E+Q M + ++ L+A L +
Sbjct: 464 SQSERLYIVDGIAADVRADGRRRLAYRNMSVETSLLSQSNGSARVSLENSGTDILASVKLEVTAPRPEAPXAGVVQVAVACSP-SVSAKLSGRAAEELNVELSQQMTRLLCSCPSVDLEQFCIVPGESVWGLHVDVTVFESTGNLPDLMSMAIYAALNDTVFPAVRLV--GVEGEDKTIE----VESDPAVGTRMDASNWPICVTLCKVGDYFITDPMQEEEL--CMTAQVSVAVDPLGNVCGVQKSGSGAMEMKEMQHMVDEACERSKELFRALQAALSV 735 The following BLAST results are available for this feature:
BLAST of NO21G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G00340 ID=NO21G00340|Name=NO21G00340|organism=Nannochloropsis oceanica|type=gene|length=1978bpback to top protein sequence of NO21G00340.1 >NO21G00340.1-protein ID=NO21G00340.1-protein|Name=NO21G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bpback to top Synonyms
Publications
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